Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Reverse (-)

24538019 .. 24539186

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1115400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAGTGTTTTCCGTAGCAGATAATGCTATGTTCAACCTCTCCAGATCTTTTCCTCGTTTCTCTCAGCCACCCTCTCTCAGATATTCATCTCAGAAAGTCTCCCGCGTCTGCTTCATCTCCGCCTCCAAATCCGAGGGACGAAATGCGGCCGGGGAGAACAAGGGATATGACAAAGCGAAAGAAACCATGGGAGAAGGCCTAGAAAACACGAAGCGAAAAGCCGAGGAAATGAAAGAGACGACCAAGGATTACGCGCAGGAAGCAAAGGATAAGACGAAGAGCGCAGCTGAGACTATGGAGGAGAATACGAAGAGCGCAGCTGGGACTATGGAGGAGAAGGCGAAAGAGGGAACGAATAGAGCAGCGGAGACGGTGGAGAGCACCAAGGAGAAAGCTAAAGAGTACGGTTACGAGACAAAGGAGAAGACCAATGAGATGGCGGACACTGTGACAGAAAAAGTGGGGGAGGGGACTCAGAGGGCAGCCGAGACAGCGGAGAGCGCGAAGGAGAAGGCCAAAGAGAATATGTGGGGGATGGAGAAGAAAACAGAGGATGCGGTGGGAACTTTGGCGGAGAAGGTGGAGGAGGGGAGAAGTAAGGCGGCGGAGACGGCAAAGGACACAGTGGAAGGGGCTTGGGGGGCGGTGAAGGAGACGGGGCAGAAGATTAAGGAGACGGTGGTAGCTCCTGATGAGGAAGTGGGAGGTGGTGGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.08

Weight (kDa)

5.31

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	108, 257, 506
AcoI	YGGCCR	2 cut(s)	150, 715
AfaI	GTAC	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	4 cut(s)	290, 323, 398, 689
AluI	AGCT	4 cut(s)	290, 323, 398, 689
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	9 cut(s)	106, 233, 287, 365, 410, 485, 605, 650, 671
AoxI	GGCC	4 cut(s)	150, 199, 516, 715
ApeKI	GCWGC	4 cut(s)	287, 320, 365, 485
AspLEI	GCGC	4 cut(s)	259, 287, 320, 506
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	299, 332, 377, 497
BccI	CCATC	2 cut(s)	433, 532
BceAI	ACGGC	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	9 cut(s)	106, 233, 287, 365, 410, 485, 605, 650, 671
BfaI	CTAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	6 cut(s)	150, 288, 321, 366, 486, 606
BlsI	GCNGC	6 cut(s)	151, 289, 322, 367, 487, 607
Bme1390I	CCNGG	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	88
BsaJI	CCNNGG	6 cut(s)	135, 153, 189, 225, 246, 387
Bse8I	GATNNNNATC	1 cut(s)	88
BseDI	CCNNGG	6 cut(s)	135, 153, 189, 225, 246, 387
BseGI	GGATG	2 cut(s)	543, 562
BseJI	GATNNNNATC	1 cut(s)	88
BseMII	CTCAG	5 cut(s)	80, 94, 107, 282, 491
BseRI	GAGGAG	3 cut(s)	317, 350, 602
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	4 cut(s)	299, 332, 377, 497
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	3 cut(s)	108, 257, 506
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	152, 201, 518, 717
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	3 cut(s)	153, 340, 487
BsmAI	GTCTC	9 cut(s)	106, 233, 287, 365, 410, 485, 605, 650, 671
BsmBI	CGTCTC	5 cut(s)	233, 365, 605, 650, 671
BsmFI	GGGAC	3 cut(s)	153, 340, 487
BsnI	GGCC	4 cut(s)	152, 201, 518, 717
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	189
BspANI	GGCC	4 cut(s)	152, 201, 518, 717
BspCNI	CTCAG	5 cut(s)	79, 93, 106, 283, 490
BspFNI	CGCG	3 cut(s)	108, 257, 506
BspQI	GCTCTTC	2 cut(s)	275, 308
BssECI	CCNNGG	6 cut(s)	135, 153, 189, 225, 246, 387
BssMI	GATC	1 cut(s)	47
BssT1I	CCWWGG	3 cut(s)	189, 246, 387
Bst4CI	ACNGT	5 cut(s)	376, 410, 451, 628, 682
Bst6I	CTCTTC	2 cut(s)	275, 308
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstDEI	CTNAG	5 cut(s)	66, 80, 93, 291, 477
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	543, 562
BstFNI	CGCG	3 cut(s)	108, 257, 506
BstHHI	GCGC	4 cut(s)	259, 287, 320, 506
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	9 cut(s)	106, 233, 287, 365, 410, 485, 605, 650, 671
BstMBI	GATC	1 cut(s)	47
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 263, 494, 503, 614, 644
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	3 cut(s)	108, 257, 506
BstV1I	GCAGC	4 cut(s)	299, 332, 377, 497
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	47
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	152, 201, 518, 717
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	543, 562
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 447, 633
CfoI	GCGC	4 cut(s)	259, 287, 320, 506
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	5 cut(s)	66, 80, 93, 291, 477
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	150, 715
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	275, 308
EarI	CTCTTC	2 cut(s)	275, 308
EciI	GGCGGA	4 cut(s)	112, 458, 590, 623
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	3 cut(s)	189, 246, 387
Eco147I	AGGCCT	1 cut(s)	201
Eco52I	CGGCCG	1 cut(s)	150
EcoT14I	CCWWGG	3 cut(s)	189, 246, 387
ErhI	CCWWGG	3 cut(s)	189, 246, 387
Esp3I	CGTCTC	5 cut(s)	233, 365, 605, 650, 671
FaeI	CATG	1 cut(s)	193
FaiI	YATR	6 cut(s)	32, 171, 191, 299, 332, 530
FaqI	GGGAC	3 cut(s)	153, 340, 487
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	6 cut(s)	150, 288, 321, 366, 486, 606
FokI	GGATG	2 cut(s)	550, 569
Fsp4HI	GCNGC	6 cut(s)	150, 288, 321, 366, 486, 606
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	4 cut(s)	258, 286, 319, 505
GluI	GCNGC	6 cut(s)	150, 288, 321, 366, 486, 606
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	4 cut(s)	152, 201, 518, 717
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	4 cut(s)	259, 287, 320, 506
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	4 cut(s)	257, 285, 318, 504
HinP1I	GCGC	4 cut(s)	257, 285, 318, 504
HinfI	GANTC	1 cut(s)	475
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	661
Hpy188I	TCNGA	4 cut(s)	83, 96, 136, 480
Hpy188III	TCNNGA	2 cut(s)	45, 692
HpyAV	CCTTC	7 cut(s)	191, 334, 502, 508, 574, 626, 646
HpyCH4III	ACNGT	5 cut(s)	376, 410, 451, 628, 682
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 263, 494, 503, 614, 644
HpyF3I	CTNAG	5 cut(s)	66, 80, 93, 291, 477
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	4 cut(s)	257, 285, 318, 504
Kzo9I	GATC	1 cut(s)	47
LguI	GCTCTTC	2 cut(s)	275, 308
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	5 cut(s)	58, 166, 245, 309, 705
Lsp1109I	GCAGC	4 cut(s)	299, 332, 377, 497
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	410, 451
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	5 cut(s)	292, 325, 439, 556, 679
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	717
MluNI	TGGCCA	1 cut(s)	717
MlyI	GAGTC	1 cut(s)	469
Mox20I	TGGCCA	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	1 cut(s)	672
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	4 cut(s)	290, 323, 368, 497
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	3 cut(s)	108, 257, 506
MwoI	GCNNNNNNNGC	6 cut(s)	26, 263, 494, 503, 614, 644
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	193
NmeAIII	GCCGAG	2 cut(s)	250, 514
NmuCI	GTSAC	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	2 cut(s)	275, 308
PkrI	GCNGC	6 cut(s)	151, 289, 322, 367, 487, 607
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	47
PvuII	CAGCTG	2 cut(s)	290, 323
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SapI	GCTCTTC	2 cut(s)	275, 308
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	6 cut(s)	150, 288, 321, 366, 486, 606
Sau3AI	GATC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	7 cut(s)	42, 292, 325, 400, 585, 691, 712
SfaNI	GCATC	1 cut(s)	547
SseBI	AGGCCT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	3 cut(s)	189, 246, 387
TaaI	ACNGT	5 cut(s)	376, 410, 451, 628, 682
TauI	GCSGC	2 cut(s)	152, 608
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	12, 454, 633
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	4 cut(s)	287, 320, 365, 485
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	78, 106, 248
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	3 cut(s)	12, 454, 633
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.