Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Forward (+)

6682747 .. 6683799

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGAGCCTTTCATTAGCGAAGAATCTCATCTTCAATCTCTCAAAGTCGTTTCCTCAATCCCAAGTTTCACTCTCTCTCAGACCCTCTCTCAAAATCTCTAGGGTCTGCTTCATCTCCGCCTCCAAATTCTCCAAGGGTCGAAATGCGGCGGAGATAAATAGGGATTCAAATTCTCACCGGGCGTATGCTGATAAGGACTGGAGGGACAAGGAAAGAGGCTACGGCTCTGCTGATGTGAGCAAGCACGCGAAAGAAACCATGGAAGAAGGACTAGAAAAAACCAAGCGGGAAGCAGAGGAGATGAAAGAGAGAGCGAAGGATTACGCCTACGAAGCTAAGGAGAAGACAAAGAGTGCGGCGGAAACCATGGAGGAGAAGGCCAAAGAGGGAACGTATAAGGCTTCAGAGACAGCGGAGAGTGCCAAGGAGAAGGCAAAGGACTACGCTTATGATGCTAAGAAAAAGACGAAAGACATGGCTGGAACTGTGGCGGAGAAGGCTAAGGAGGGGACTCACAAGGTGGCGAAGACTGCGGGGAGTGCTAAGGAGAAGGCCCAGGACACGGTTTATGAGGCGACTGAGGAGGCGGAGGATGTTGCGGAGACGGTGGCGGATAAGGTGAAGGGAGGGACACATAAGGCTGCGGAGACCGTGAAGGATACAGTGAAGGGCGCTTGGGAGGCGACTAAGGAGACGGGGCAGGCAATCAAGGAGGCAGTTGTGGGGCCCGATGAGGAGGTGGCAGTGGTTGTGGAGGACACATCAGATGATGATGTGGTGGTTGATCTTGTCGAAGAGAGTACTTCGTCCGATGAAGATGTGGCGGTGACCGGAGGGAAGGTGATGGATGAGGATGTCATTGAGCGGAGGCGTGCTGCTGGGTATAGGTCCGATGAGGACCTGTCGGCGGAGGTGGAGCTTAGGCGGCGGACCGCCTATAAGAAGGGCGGTGACAAGAAAGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

35.41

Weight (kDa)

5.37

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	868
AccII	CGCG	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	128, 172
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	805
AfiI	CCNNNNNNNGG	2 cut(s)	565, 910
AgsI	TTSAA	2 cut(s)	37, 171
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	2 cut(s)	338, 922
AluI	AGCT	2 cut(s)	338, 922
Alw26I	GTCTC	4 cut(s)	404, 599, 644, 689
AoxI	GGCC	3 cut(s)	381, 555, 728
ApaI	GGGCCC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	644, 878
ApoI	RAATTY	2 cut(s)	128, 172
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	6 cut(s)	556, 728, 729, 891, 901, 933
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	5 cut(s)	170, 634, 841, 856, 965
AvaII	GGWCC	3 cut(s)	891, 901, 933
BaeGI	GKGCMC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	353, 536
BbvI	GCAGC	2 cut(s)	631, 865
BccI	CCATC	1 cut(s)	841
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	560
BciVI	GTATCC	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	4 cut(s)	404, 599, 644, 689
BfaI	CTAG	2 cut(s)	102, 275
BfoI	RGCGCY	1 cut(s)	678
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
BlsI	GCNGC	5 cut(s)	151, 361, 646, 880, 930
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	2 cut(s)	182, 560
Bme18I	GGWCC	3 cut(s)	891, 901, 933
BmgT120I	GGNCC	6 cut(s)	556, 728, 729, 891, 901, 933
BmiI	GGNNCC	2 cut(s)	729, 730
BmrFI	CCNGG	2 cut(s)	182, 560
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	2 cut(s)	353, 536
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	4 cut(s)	339, 504, 546, 923
BpuMI	CCSGG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	135, 261, 369, 426, 558
BsaWI	WCCGGW	1 cut(s)	833
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 910
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	5 cut(s)	135, 261, 369, 426, 558
BseGI	GGATG	3 cut(s)	601, 856, 862
BseLI	CCNNNNNNNGG	2 cut(s)	565, 910
BseMII	CTCAG	2 cut(s)	94, 573
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	4 cut(s)	314, 389, 599, 752
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	2 cut(s)	631, 865
BseYI	CCCAGC	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	383, 557, 730
BsiSI	CCGG	2 cut(s)	181, 834
BslFI	GGGAC	3 cut(s)	221, 526, 646
BslI	CCNNNNNNNGG	2 cut(s)	565, 910
BsmAI	GTCTC	4 cut(s)	404, 599, 644, 689
BsmBI	CGTCTC	2 cut(s)	599, 689
BsmFI	GGGAC	3 cut(s)	221, 526, 646
BsnI	GGCC	3 cut(s)	383, 557, 730
Bso31I	GGTCTC	1 cut(s)	644
Bsp120I	GGGCCC	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	787
Bsp19I	CCATGG	2 cut(s)	261, 369
BspANI	GGCC	3 cut(s)	383, 557, 730
BspCNI	CTCAG	2 cut(s)	93, 574
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	729, 730
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	135, 261, 369, 426, 558
BssMI	GATC	1 cut(s)	787
BssT1I	CCWWGG	4 cut(s)	135, 261, 369, 426
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	5 cut(s)	490, 568, 610, 655, 667
Bst6I	CTCTTC	1 cut(s)	792
BstC8I	GCNNGC	5 cut(s)	7, 245, 249, 705, 876
BstDEI	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
BstDSI	CCRYGG	2 cut(s)	261, 369
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	3 cut(s)	601, 856, 862
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	4 cut(s)	404, 599, 644, 689
BstMBI	GATC	1 cut(s)	787
BstMWI	GCNNNNNNNGC	8 cut(s)	335, 422, 455, 500, 533, 542, 683, 928
BstNI	CCWGG	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	829
BstSCI	CCNGG	2 cut(s)	180, 558
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	631, 865
BstV2I	GAAGAC	2 cut(s)	353, 536
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	383, 557, 730
BtgI	CCRYGG	2 cut(s)	261, 369
BtsCI	GGATG	3 cut(s)	601, 856, 862
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	672, 753
Cac8I	GCNNGC	5 cut(s)	7, 245, 249, 705, 876
CfoI	GCGC	1 cut(s)	677
Cfr13I	GGNCC	6 cut(s)	556, 728, 729, 891, 901, 933
CpoI	CGGWCCG	1 cut(s)	933
Csp6I	GTAC	1 cut(s)	804
CspI	CGGWCCG	1 cut(s)	933
CviAII	CATG	3 cut(s)	262, 370, 478
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
DraIII	CACNNNGTG	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
EciI	GGCGGA	8 cut(s)	109, 167, 377, 509, 605, 629, 926, 946
Eco130I	CCWWGG	4 cut(s)	135, 261, 369, 426
Eco24I	GRGCYC	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	891, 901, 933
Eco57I	CTGAAG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	829
EcoO109I	RGGNCCY	2 cut(s)	728, 901
EcoO65I	GGTNACC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	4 cut(s)	135, 261, 369, 426
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	4 cut(s)	135, 261, 369, 426
Esp3I	CGTCTC	2 cut(s)	599, 689
FaeI	CATG	3 cut(s)	265, 373, 481
FaqI	GGGAC	3 cut(s)	221, 526, 646
FatI	CATG	3 cut(s)	261, 369, 477
FauI	CCCGC	2 cut(s)	282, 529
Fnu4HI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
FokI	GGATG	3 cut(s)	608, 863, 869
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
FspBI	CTAG	2 cut(s)	102, 275
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
GsaI	CCCAGC	1 cut(s)	885
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	3 cut(s)	383, 557, 730
HapII	CCGG	2 cut(s)	181, 834
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	265, 373, 481
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HinfI	GANTC	3 cut(s)	25, 167, 514
HpaII	CCGG	2 cut(s)	181, 834
HphI	GGTGA	5 cut(s)	170, 634, 841, 856, 965
Hpy188I	TCNGA	5 cut(s)	83, 409, 769, 814, 895
HpyCH4III	ACNGT	5 cut(s)	490, 568, 610, 655, 667
HpyCH4IV	ACGT	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	8 cut(s)	335, 422, 455, 500, 533, 542, 683, 928
HpyF3I	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	265, 373, 481
HspAI	GCGC	1 cut(s)	675
Kzo9I	GATC	1 cut(s)	787
LmnI	GCTCC	1 cut(s)	919
LpnPI	CCDG	9 cut(s)	187, 194, 468, 545, 572, 689, 847, 867, 917
Lsp1109I	GCAGC	2 cut(s)	631, 865
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	102, 275
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	829, 953
MalI	GATC	1 cut(s)	789
MbiI	CCGCTC	1 cut(s)	868
MboI	GATC	1 cut(s)	787
MboII	GAAGA	7 cut(s)	25, 34, 278, 358, 541, 809, 830
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	2 cut(s)	128, 172
MlyI	GAGTC	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	2 cut(s)	181, 834
MspR9I	CCNGG	2 cut(s)	182, 560
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	8 cut(s)	335, 422, 455, 500, 533, 542, 683, 928
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	2 cut(s)	261, 369
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	3 cut(s)	265, 373, 481
NlaIV	GGNNCC	2 cut(s)	729, 730
NmuCI	GTSAC	2 cut(s)	829, 953
PfeI	GAWTC	2 cut(s)	25, 167
PkrI	GCNGC	5 cut(s)	151, 361, 646, 880, 930
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	901
Psp5II	RGGWCCY	1 cut(s)	901
Psp6I	CCWGG	1 cut(s)	558
PspEI	GGTNACC	1 cut(s)	829
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	729, 730
PspOMI	GGGCCC	1 cut(s)	728
PspPI	GGNCC	6 cut(s)	556, 728, 729, 891, 901, 933
PspPPI	RGGWCCY	1 cut(s)	901
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
Rsr2I	CGGWCCG	1 cut(s)	933
RsrII	CGGWCCG	1 cut(s)	933
SatI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	6 cut(s)	556, 728, 729, 891, 901, 933
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	182, 560
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	445
SinI	GGWCC	3 cut(s)	891, 901, 933
Sse9I	AATT	2 cut(s)	128, 172
SspMI	CTAG	2 cut(s)	102, 275
StyD4I	CCNGG	2 cut(s)	180, 558
StyI	CCWWGG	4 cut(s)	135, 261, 369, 426
TaaI	ACNGT	5 cut(s)	490, 568, 610, 655, 667
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	142, 795
TasI	AATT	2 cut(s)	128, 172
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	3 cut(s)	152, 362, 931
TfiI	GAWTC	2 cut(s)	25, 167
TscAI	CASTG	2 cut(s)	672, 753
TseFI	GTSAC	2 cut(s)	829, 953
TseI	GCWGC	2 cut(s)	644, 878
Tsp45I	GTSAC	2 cut(s)	829, 953
TspDTI	ATGAA	3 cut(s)	103, 320, 831
TspRI	CASTG	2 cut(s)	672, 753
VpaK11BI	GGWCC	3 cut(s)	891, 901, 933
XapI	RAATTY	2 cut(s)	128, 172
XspI	CTAG	2 cut(s)	102, 275
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.