Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020593.1

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Forward (+)

6851 .. 7900

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020593.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggcgagcctttcattagcgaagaatctcatcttcaatctctcaaagtcgtttcctcaatcccaagtttcactctctctcagacccactctcaaaatctctagggtctgcttcacctccgcctccaaattctccgagggtcgaaatgcggcggaggagaatagggattcaaattctcaccggccgtatgccgataaggactggagggacaaggaaagagggtacggctctgctgaagtgagcaagcacgcgaaagaaaccatggaagaaggactagaaaaaaccaagcgggaagcagaggagatgaaagagagagcgaaggattacgcctacgaagctaaggagaagacaaagagtgcggcggaaaccatggaggagaaggccaaagagggaacgtataaggcttcagagacagcggagagtgccaaggagaaggaaaaggactacgcttatgatgctaaggagaagacgaaagacatggctggaactgtcgtggagaaggctaaggaggggactcacaaggtggcgaagactgcggggagtgctaaggagaaggccaaggacacggtttatgaggtgactgagaaggcagagggtgtggcggagacggtggcggataaggtgaagggaggaacacataaggctgcggagaccgtgaaggatacagtgaagggcgcttgggaggcgactaaggagacggggcaggcaatcaaggaggcagttgtggggcccgatgcggaggtggcagtggtcgtggaggacacgtcagatgatgatatggcggttgatcttgtcgaagagagtacttcgtccgatgaagatgtggcggtgaccggagggaaggtaatggatgctgatgtcattgagcggaggcgtgctgctgggtataggtccgatgaggacctgtcggcggaggcagagcttaggcggcggaccgcccataagaaggccggtgacaagaaagatacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.37

Weight (kDa)

5.43

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	868
AccII	CGCG	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	128, 172
AcuI	CTGAAG	2 cut(s)	255, 390
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	2 cut(s)	224, 805
AfiI	CCNNNNNNNGG	2 cut(s)	910, 946
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	2 cut(s)	37, 171
AjiI	CACGTC	1 cut(s)	765
AluBI	AGCT	2 cut(s)	338, 922
AluI	AGCT	2 cut(s)	338, 922
Alw26I	GTCTC	4 cut(s)	404, 599, 644, 689
AoxI	GGCC	5 cut(s)	182, 381, 555, 728, 948
ApaI	GGGCCC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	644, 878
ApoI	RAATTY	2 cut(s)	128, 172
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	5 cut(s)	728, 729, 891, 901, 933
AsuHPI	GGTGA	6 cut(s)	106, 170, 589, 634, 841, 965
AvaII	GGWCC	3 cut(s)	891, 901, 933
BaeGI	GKGCMC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	732
BbsI	GAAGAC	3 cut(s)	353, 473, 536
BbvI	GCAGC	2 cut(s)	631, 865
BceAI	ACGGC	2 cut(s)	169, 241
BciVI	GTATCC	1 cut(s)	655
BcoDI	GTCTC	4 cut(s)	404, 599, 644, 689
BfaI	CTAG	2 cut(s)	102, 275
BfoI	RGCGCY	1 cut(s)	678
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
BlsI	GCNGC	5 cut(s)	151, 361, 646, 880, 930
BmcAI	AGTACT	1 cut(s)	805
Bme18I	GGWCC	3 cut(s)	891, 901, 933
BmgBI	CACGTC	1 cut(s)	765
BmgT120I	GGNCC	5 cut(s)	728, 729, 891, 901, 933
BmiI	GGNNCC	2 cut(s)	729, 730
BmsI	GCATC	3 cut(s)	445, 724, 841
BpiI	GAAGAC	3 cut(s)	353, 473, 536
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	5 cut(s)	339, 459, 504, 546, 923
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	135, 261, 369, 426, 558
BsaWI	WCCGGW	1 cut(s)	833
BsaXI	ACNNNNNCTCC	4 cut(s)	749, 779, 828, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	910, 946
Bse118I	RCCGGY	2 cut(s)	180, 950
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	5 cut(s)	135, 261, 369, 426, 558
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	2 cut(s)	910, 946
BseMII	CTCAG	2 cut(s)	94, 573
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	3 cut(s)	170, 314, 389
BseSI	GKGCMC	1 cut(s)	732
BseX3I	CGGCCG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	631, 865
BseYI	CCCAGC	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	5 cut(s)	184, 383, 557, 730, 950
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	181, 834, 951
BslFI	GGGAC	2 cut(s)	221, 526
BslI	CCNNNNNNNGG	2 cut(s)	910, 946
BsmAI	GTCTC	4 cut(s)	404, 599, 644, 689
BsmBI	CGTCTC	2 cut(s)	599, 689
BsmFI	GGGAC	2 cut(s)	221, 526
BsnI	GGCC	5 cut(s)	184, 383, 557, 730, 950
Bso31I	GGTCTC	1 cut(s)	644
Bsp120I	GGGCCC	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	787
Bsp19I	CCATGG	2 cut(s)	261, 369
BspANI	GGCC	5 cut(s)	184, 383, 557, 730, 950
BspCNI	CTCAG	2 cut(s)	93, 574
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	729, 730
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	868
BsrFI	RCCGGY	2 cut(s)	180, 950
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	2 cut(s)	180, 950
BssECI	CCNNGG	5 cut(s)	135, 261, 369, 426, 558
BssMI	GATC	1 cut(s)	787
BssT1I	CCWWGG	4 cut(s)	261, 369, 426, 558
Bst4CI	ACNGT	5 cut(s)	490, 568, 610, 655, 667
Bst6I	CTCTTC	1 cut(s)	792
BstC8I	GCNNGC	5 cut(s)	7, 245, 249, 705, 876
BstDEI	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
BstDSI	CCRYGG	2 cut(s)	261, 369
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	1 cut(s)	856
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	4 cut(s)	404, 599, 644, 689
BstMBI	GATC	1 cut(s)	787
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	8 cut(s)	335, 422, 455, 533, 542, 683, 743, 928
BstPI	GGTNACC	1 cut(s)	829
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	631, 865
BstV2I	GAAGAC	3 cut(s)	353, 473, 536
BstZI	CGGCCG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	5 cut(s)	184, 383, 557, 730, 950
BtgI	CCRYGG	2 cut(s)	261, 369
BtrI	CACGTC	1 cut(s)	765
BtsCI	GGATG	1 cut(s)	856
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	672, 753
Cac8I	GCNNGC	5 cut(s)	7, 245, 249, 705, 876
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	2 cut(s)	180, 950
Cfr13I	GGNCC	5 cut(s)	728, 729, 891, 901, 933
CpoI	CGGWCCG	1 cut(s)	933
Csp6I	GTAC	2 cut(s)	223, 804
CspI	CGGWCCG	1 cut(s)	933
CviAII	CATG	3 cut(s)	262, 370, 478
CviQI	GTAC	2 cut(s)	223, 804
DdeI	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
DraIII	CACNNNGTG	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	182
EagI	CGGCCG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
EciI	GGCGGA	7 cut(s)	109, 167, 377, 617, 629, 926, 946
EclXI	CGGCCG	1 cut(s)	182
Eco130I	CCWWGG	4 cut(s)	261, 369, 426, 558
Eco24I	GRGCYC	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	891, 901, 933
Eco52I	CGGCCG	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	255, 390
Eco91I	GGTNACC	1 cut(s)	829
EcoO109I	RGGNCCY	2 cut(s)	728, 901
EcoO65I	GGTNACC	1 cut(s)	829
EcoT14I	CCWWGG	4 cut(s)	261, 369, 426, 558
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	4 cut(s)	261, 369, 426, 558
Esp3I	CGTCTC	2 cut(s)	599, 689
FaeI	CATG	3 cut(s)	265, 373, 481
FaqI	GGGAC	2 cut(s)	221, 526
FatI	CATG	3 cut(s)	261, 369, 477
FauI	CCCGC	2 cut(s)	282, 529
Fnu4HI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
FokI	GGATG	1 cut(s)	863
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
FspBI	CTAG	2 cut(s)	102, 275
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
GsaI	CCCAGC	1 cut(s)	885
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	5 cut(s)	184, 383, 557, 730, 950
HapII	CCGG	3 cut(s)	181, 834, 951
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	265, 373, 481
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HinfI	GANTC	3 cut(s)	25, 167, 514
HpaII	CCGG	3 cut(s)	181, 834, 951
HphI	GGTGA	6 cut(s)	106, 170, 589, 634, 841, 965
Hpy188I	TCNGA	6 cut(s)	83, 136, 409, 769, 814, 895
HpyCH4III	ACNGT	5 cut(s)	490, 568, 610, 655, 667
HpyCH4IV	ACGT	2 cut(s)	395, 764
HpyF10VI	GCNNNNNNNGC	8 cut(s)	335, 422, 455, 533, 542, 683, 743, 928
HpyF3I	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
HpySE526I	ACGT	2 cut(s)	395, 764
Hsp92II	CATG	3 cut(s)	265, 373, 481
HspAI	GCGC	1 cut(s)	675
Kzo9I	GATC	1 cut(s)	787
LpnPI	CCDG	8 cut(s)	187, 194, 468, 689, 847, 867, 917, 964
Lsp1109I	GCAGC	2 cut(s)	631, 865
LweI	GCATC	3 cut(s)	445, 724, 841
MaeI	CTAG	2 cut(s)	102, 275
MaeII	ACGT	2 cut(s)	395, 764
MaeIII	GTNAC	3 cut(s)	577, 829, 953
MalI	GATC	1 cut(s)	789
MbiI	CCGCTC	1 cut(s)	868
MboI	GATC	1 cut(s)	787
MboII	GAAGA	8 cut(s)	25, 34, 278, 358, 478, 541, 809, 830
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	2 cut(s)	128, 172
MlyI	GAGTC	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	3 cut(s)	181, 834, 951
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	8 cut(s)	335, 422, 455, 533, 542, 683, 743, 928
NcoI	CCATGG	2 cut(s)	261, 369
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	3 cut(s)	265, 373, 481
NlaIV	GGNNCC	2 cut(s)	729, 730
NmuCI	GTSAC	3 cut(s)	577, 829, 953
PfeI	GAWTC	2 cut(s)	25, 167
PkrI	GCNGC	5 cut(s)	151, 361, 646, 880, 930
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	901
Psp5II	RGGWCCY	1 cut(s)	901
PspEI	GGTNACC	1 cut(s)	829
PspFI	CCCAGC	1 cut(s)	881
PspN4I	GGNNCC	2 cut(s)	729, 730
PspOMI	GGGCCC	1 cut(s)	728
PspPI	GGNCC	5 cut(s)	728, 729, 891, 901, 933
PspPPI	RGGWCCY	1 cut(s)	901
RsaI	GTAC	2 cut(s)	224, 805
RsaNI	GTAC	2 cut(s)	223, 804
Rsr2I	CGGWCCG	1 cut(s)	933
RsrII	CGGWCCG	1 cut(s)	933
SatI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	5 cut(s)	728, 729, 891, 901, 933
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	3 cut(s)	445, 724, 841
SinI	GGWCC	3 cut(s)	891, 901, 933
Sse9I	AATT	2 cut(s)	128, 172
SspMI	CTAG	2 cut(s)	102, 275
StyI	CCWWGG	4 cut(s)	261, 369, 426, 558
TaaI	ACNGT	5 cut(s)	490, 568, 610, 655, 667
TaiI	ACGT	2 cut(s)	398, 767
TaqI	TCGA	2 cut(s)	142, 795
TasI	AATT	2 cut(s)	128, 172
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	3 cut(s)	152, 362, 931
TfiI	GAWTC	2 cut(s)	25, 167
TscAI	CASTG	2 cut(s)	672, 753
TseFI	GTSAC	3 cut(s)	577, 829, 953
TseI	GCWGC	2 cut(s)	644, 878
Tsp45I	GTSAC	3 cut(s)	577, 829, 953
TspDTI	ATGAA	2 cut(s)	320, 831
TspRI	CASTG	2 cut(s)	672, 753
VpaK11BI	GGWCC	3 cut(s)	891, 901, 933
XapI	RAATTY	2 cut(s)	128, 172
XspI	CTAG	2 cut(s)	102, 275
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.