Rroxscaffold_1G00067190

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001595
Physical Location & Seq
Reverse (-)
88558654 .. 88559519
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067190.1

Sequence Viewer

Length: 609 bp
ATGGCAGCCAGCAATGTCATCTTCAACCTCTCAAGGTCCTCGTTTCCTCAATCCCCGGCTTCACAGTCCCTCAGTCCCTCTCTCAAAACCTCCAGGGTCTGCTTCACCTCCTTCTCCAACTTCTCCAAGGTTGGAAATGCGGCGGAGAAGAGTAGGAACTCAAGTTCTCGCTGGGCGTATGACGACAAGGACTGGAGTACTAAAGCAAAGCAAACCCTGGAAGACGATGTCGAGAGTGGAAAGCAACGCTTCGAGGAACTGAAGGGAGCAGCAACCGATTACGCCAAAGACACTGTGGAGAACGTCAAAGGTGCGGCGGCGACTATAGGAGAGAAAGTCAAGGAGGGGTCGGACAAGGTGGCGGAGTCCGCGGATAGTACCAAGGAGAAGGTAAAGGAGTATGCAGATGGTGCAACAGAGAAGACAAAAGACGCGGCGGAGACTATAGCGGCGAAGGCCAAGGGGGACAGTAACAAGGTGGTGGACACCACAGTGAGTGCCAAGGACACTGCTTACGATGCTGCAGAGAGTGGGGCGGAGACGGTGAAAGATAAGGTGAACGAGGGGACGAGCAAGACGGCGGAGGCGGTGAAGAATTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

202

Amino Acids

21.5

Weight (kDa)

5.78

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Apolipoprotein PF01442 69 - 195 5.5e-06 Apolipoprotein A1/A4/E domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 371, 434
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 2 cut(s) 199, 379
AgsI TTSAA 2 cut(s) 25, 601
AjnI CCWGG 2 cut(s) 92, 216
AleI CACNNNNGTG 1 cut(s) 491
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
Alw26I GTCTC 2 cut(s) 434, 533
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 5, 269, 521
ApoI RAATTY 1 cut(s) 595
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 97, 556, 568, 601
AvaII GGWCC 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 228, 428
BbvI GCAGC 3 cut(s) 17, 281, 508
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 594
BciT130I CCWGG 2 cut(s) 94, 218
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 434, 533
BfmI CTRYAG 3 cut(s) 324, 444, 522
BisI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
BlsI GCNGC 8 cut(s) 7, 142, 271, 316, 319, 436, 451, 523
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 56, 94, 218
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 56, 94, 218
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 228, 428
BpmI CTGGAG 2 cut(s) 76, 214
BpuEI CTTGAG 2 cut(s) 16, 145
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 8 cut(s) 54, 93, 126, 216, 369, 381, 459, 501
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 94, 218
BseDI CCNNGG 8 cut(s) 54, 93, 126, 216, 369, 381, 459, 501
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 17, 281, 508
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 2 cut(s) 371, 434
BshFI GGCC 1 cut(s) 458
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 4 cut(s) 52, 60, 479, 580
BsmAI GTCTC 2 cut(s) 434, 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 4 cut(s) 52, 60, 479, 580
BsnI GGCC 1 cut(s) 458
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 2 cut(s) 371, 434
BspMAI CTGCAG 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 8 cut(s) 54, 93, 126, 216, 369, 381, 459, 501
BssT1I CCWWGG 4 cut(s) 126, 381, 459, 501
Bst2UI CCWGG 2 cut(s) 94, 218
Bst4CI ACNGT 5 cut(s) 66, 295, 470, 493, 544
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 369
BstFNI CGCG 2 cut(s) 371, 434
BstMAI GTCTC 2 cut(s) 434, 533
BstMWI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 518
BstNI CCWGG 2 cut(s) 94, 218
BstSCI CCNGG 3 cut(s) 54, 92, 216
BstSFI CTRYAG 3 cut(s) 324, 444, 522
BstUI CGCG 2 cut(s) 371, 434
BstV1I GCAGC 3 cut(s) 17, 281, 508
BstV2I GAAGAC 2 cut(s) 228, 428
BsuRI GGCC 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 369
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 3 cut(s) 291, 498, 507
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 36
Cfr42I CCGCGG 1 cut(s) 372
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 198, 378
CviJI RGCY 3 cut(s) 8, 59, 458
CviKI_1 RGCY 3 cut(s) 8, 59, 458
CviQI GTAC 2 cut(s) 198, 378
DdeI CTNAG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 5 cut(s) 158, 377, 452, 551, 596
Eco130I CCWWGG 4 cut(s) 126, 381, 459, 501
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 92, 216
EcoT14I CCWWGG 4 cut(s) 126, 381, 459, 501
ErhI CCWWGG 4 cut(s) 126, 381, 459, 501
Esp3I CGTCTC 1 cut(s) 533
FaiI YATR 4 cut(s) 180, 326, 402, 446
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 4 cut(s) 52, 60, 479, 580
Fnu4HI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
Fsp4HI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
GluI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 76, 214
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 440
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 56
HphI GGTGA 4 cut(s) 97, 556, 568, 601
Hpy166II GTNNAC 2 cut(s) 484, 559
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 2 cut(s) 484, 559
HpyAV CCTTC 4 cut(s) 121, 256, 382, 448
HpyCH4III ACNGT 5 cut(s) 66, 295, 470, 493, 544
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 404, 413, 524
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 518
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 303
KspI CCGCGG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 8 cut(s) 22, 69, 79, 106, 157, 178, 203, 230
Lsp1109I GCAGC 3 cut(s) 17, 281, 508
LweI GCATC 1 cut(s) 508
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 470
MboII GAAGA 5 cut(s) 13, 160, 233, 433, 604
MluCI AATT 1 cut(s) 595
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 3 cut(s) 112, 141, 330
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 56, 94, 218
MvaI CCWGG 2 cut(s) 94, 218
MvnI CGCG 2 cut(s) 371, 434
MwoI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 518
NciI CCSGG 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 491
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 8 cut(s) 7, 142, 271, 316, 319, 436, 451, 523
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 92, 216
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 2 cut(s) 92, 216
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 199, 379
RsaNI GTAC 2 cut(s) 198, 378
RseI CAYNNNNRTG 1 cut(s) 491
SacII CCGCGG 1 cut(s) 372
SatI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 56, 94, 218
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 3 cut(s) 324, 444, 522
Sfr303I CCGCGG 1 cut(s) 372
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 31, 160
SmoI CTYRAG 2 cut(s) 31, 160
Sse9I AATT 1 cut(s) 595
StyD4I CCNGG 3 cut(s) 54, 92, 216
StyI CCWWGG 4 cut(s) 126, 381, 459, 501
TaaI ACNGT 5 cut(s) 66, 295, 470, 493, 544
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 231, 252
TasI AATT 1 cut(s) 595
TatI WGTACW 1 cut(s) 197
TauI GCSGC 5 cut(s) 143, 317, 320, 437, 452
TscAI CASTG 3 cut(s) 298, 498, 514
TseI GCWGC 3 cut(s) 5, 269, 521
TspRI CASTG 3 cut(s) 298, 498, 514
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.