Rroxscaffold_1G00067210

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001595
Physical Location & Seq
Reverse (-)
88568432 .. 88569037
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067210.1

Sequence Viewer

Length: 516 bp
ATGGCAGCCAGCAATGTCATCTTCAACATCTCGAGGTCGCCGTTAACTCAATCCCCGGCTTCACACTCTCTCAGTCCCTCTCTCAAAACCTCCAGGGTTTGCTTCACCTCCGCCTCCAAATTCTCCAAGGGTCGAAATGCAGCGGAAAAGAATAAGGACTACTCAAGTTCCCGCCGGGGGTATGACGGAAAGGACTGGAGTACCAAAGCAAAGCCAACCAGGGAAGAAGATGTCGAAGATGACAAGCCACTCTTAGAGAAAATTAAGGGGGCAGCGACGGAGTACGCGGAAGAAACGATGGAGAACGTAAAAGGCGCATCGGAGACTATATCAGAGACGACCAAGGAGTATGCAGATGATGCAAAGGAGAAGACAAACGAGGCAGCGGAGACTATAACGGCCAAGGCGGAGGAGGGGACTAACAAGGTGGCGGAGCTGGAGACGACGGAGAGTGACAGTGAGAATGTCAAGGAGAGTGAAAGTGAGAAGGTCAAGGAGACGGCAGAGAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

4.89

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 7 cut(s) 111, 143, 172, 287, 386, 407, 431
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 202, 284
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 92, 218
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
Alw26I GTCTC 5 cut(s) 317, 329, 383, 434, 491
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 5, 140, 272, 383
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 317
AsuC2I CCSGG 2 cut(s) 56, 176
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 31
BaeI ACNNNNGTAYC 2 cut(s) 184, 217
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 4 cut(s) 17, 152, 284, 395
BccI CCATC 1 cut(s) 292
BceAI ACGGC 2 cut(s) 25, 414
BciT130I CCWGG 2 cut(s) 94, 220
BcnI CCSGG 2 cut(s) 56, 176
BcoDI GTCTC 5 cut(s) 317, 329, 383, 434, 491
BisI GCNGC 4 cut(s) 6, 141, 273, 384
BlsI GCNGC 4 cut(s) 7, 142, 274, 385
Bme1390I CCNGG 4 cut(s) 56, 94, 176, 220
BmeT110I CYCGRG 1 cut(s) 31
BmrFI CCNGG 4 cut(s) 56, 94, 176, 220
BmsI GCATC 2 cut(s) 326, 349
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 3 cut(s) 76, 217, 458
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 56, 176
BsaJI CCNNGG 7 cut(s) 54, 93, 126, 175, 219, 342, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 94, 220
BseDI CCNNGG 7 cut(s) 54, 93, 126, 175, 219, 342, 402
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 4 cut(s) 17, 152, 284, 395
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 2 cut(s) 56, 175
BslFI GGGAC 2 cut(s) 60, 430
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 5 cut(s) 317, 329, 383, 434, 491
BsmBI CGTCTC 3 cut(s) 329, 434, 491
BsmFI GGGAC 2 cut(s) 60, 430
BsnI GGCC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 31
BspACI CCGC 7 cut(s) 111, 143, 172, 287, 386, 407, 431
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 7 cut(s) 54, 93, 126, 175, 219, 342, 402
BssT1I CCWWGG 3 cut(s) 126, 342, 402
Bst2UI CCWGG 2 cut(s) 94, 220
Bst4CI ACNGT 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 71, 253
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 5 cut(s) 317, 329, 383, 434, 491
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 2 cut(s) 94, 220
BstSCI CCNGG 4 cut(s) 54, 92, 174, 218
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 17, 152, 284, 395
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 201, 283
CviJI RGCY 6 cut(s) 8, 59, 214, 247, 401, 436
CviKI_1 RGCY 6 cut(s) 8, 59, 214, 247, 401, 436
CviQI GTAC 2 cut(s) 201, 283
DdeI CTNAG 2 cut(s) 71, 253
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 3 cut(s) 100, 422, 446
Eco130I CCWWGG 3 cut(s) 126, 342, 402
Eco88I CYCGRG 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 92, 218
EcoT14I CCWWGG 3 cut(s) 126, 342, 402
ErhI CCWWGG 3 cut(s) 126, 342, 402
Esp3I CGTCTC 3 cut(s) 329, 434, 491
FaiI YATR 6 cut(s) 183, 329, 351, 395, 512, 514
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 60, 430
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 4 cut(s) 6, 141, 273, 384
Fsp4HI GCNGC 4 cut(s) 6, 141, 273, 384
GlaI GCGC 1 cut(s) 316
GluI GCNGC 4 cut(s) 6, 141, 273, 384
GsuI CTGGAG 3 cut(s) 76, 217, 458
HaeIII GGCC 1 cut(s) 401
HapII CCGG 2 cut(s) 56, 175
HhaI GCGC 1 cut(s) 317
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HpaI GTTAAC 1 cut(s) 45
HpaII CCGG 2 cut(s) 56, 175
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 322, 334
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 280, 448
HpyAV CCTTC 1 cut(s) 481
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 140, 353, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 2 cut(s) 71, 253
HpySE526I ACGT 1 cut(s) 306
HspAI GCGC 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 9 cut(s) 22, 69, 79, 106, 181, 188, 205, 232, 422
Lsp1109I GCAGC 4 cut(s) 17, 152, 284, 395
LweI GCATC 2 cut(s) 326, 349
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 452
MboII GAAGA 6 cut(s) 13, 236, 239, 248, 302, 382
MluCI AATT 2 cut(s) 119, 261
MnlI CCTC 8 cut(s) 27, 88, 100, 118, 124, 373, 403, 406
MseI TTAA 2 cut(s) 44, 264
MspA1I CMGCKG 2 cut(s) 143, 386
MspI CCGG 2 cut(s) 56, 175
MspR9I CCNGG 4 cut(s) 56, 94, 176, 220
MvaI CCWGG 2 cut(s) 94, 220
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 359
NciI CCSGG 2 cut(s) 56, 176
NmuCI GTSAC 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PkrI GCNGC 4 cut(s) 7, 142, 274, 385
Psp6I CCWGG 2 cut(s) 92, 218
PspGI CCWGG 2 cut(s) 92, 218
RsaI GTAC 2 cut(s) 202, 284
RsaNI GTAC 2 cut(s) 201, 283
SaqAI TTAA 2 cut(s) 44, 264
SatI GCNGC 4 cut(s) 6, 141, 273, 384
ScrFI CCNGG 4 cut(s) 56, 94, 176, 220
SetI ASST 7 cut(s) 38, 92, 110, 309, 429, 438, 492
SfaNI GCATC 2 cut(s) 326, 349
Sfr274I CTCGAG 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 2 cut(s) 31, 163
SmoI CTYRAG 2 cut(s) 31, 163
Sse9I AATT 2 cut(s) 119, 261
SsiI CCGC 7 cut(s) 111, 143, 172, 287, 386, 407, 431
StyD4I CCNGG 4 cut(s) 54, 92, 174, 218
StyI CCWWGG 3 cut(s) 126, 342, 402
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 32, 133, 234
TasI AATT 2 cut(s) 119, 261
Tru1I TTAA 2 cut(s) 44, 264
Tru9I TTAA 2 cut(s) 44, 264
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 4 cut(s) 5, 140, 272, 383
Tsp45I GTSAC 1 cut(s) 452
TspGWI ACGGA 3 cut(s) 201, 293, 461
TspRI CASTG 1 cut(s) 463
XapI RAATTY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.