Rh5AG067800

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001595
Physical Location & Seq
Forward (+)
5692515 .. 5694407
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG067800.1

Sequence Viewer

Length: 972 bp
ATGGCGAGCCTTTCATTAGCAAAGAATCTCATCTTCAATCTCTCAAAGTCGTTTCCTCAATCCCAAGTTTCACTCTCTCTCAGACCCACTCTCAAAATCTCTAGGGTCTGCTTCACCTCCGCCTCCAAATTCTCCGAGGGTCGAAATGCGGCGGAGGAGAATAGGGATTCAAATTCTCACCGGCCGTATGCTGATAAGGACTGGAGGGACAAGAAAAGAGGGTACGGCTCTGCTGAAGTGAGCAAGCACGCGAAAGAAACCATGGAAGAAGGACTAGAAAAAACCAAGCGGGAAGCAGAGGAGATGAAAGAGAGAGCGAAGGATTACGCCTATGAAGCTAAGGAGAAGACAAAGAGTGCGGCGGAAACCATGGAGGAGAAGGCCAAAGAGGGAACGTATAAGGCTTCAGAGACAGCGGAGAGTGCCAAGGAGAAGGCAAAGGACTACGCTTATGATGCTAAGGAGAAGACGAAAGACATGGCTGGAACTGTCGCGGAGAAGGCTAAGGAGGGGACTCACAAGGTGGCGAAGACTGCGGGGAGTGCTAAGGAGAAGGCCAAGGACACGGTTTATGAGGTGACTGAGAAGGCAGAGGGTGTGGCGGAGACGGTGGCGGATAAGGTGAAAGGAGGAACACATAAGGCTGCGGAGACCGTGAAGGATACAGTGAAGGGCGCTTGGGAGGCGACTAAGGAGACGGGGCAGGCAATCAAGGAGGCAGTTGTGGGGCCCGATGCGGAGGTGGCAGTGGTCGTGGAGGACACGTCAGATGATGATATGGCGGTTGATCCTGTTGAAGAGAGTACTTCGTCCGATGAAGATGTGGCAGTGACCGGAGGGAAGGTGATGGATGCTGATGTCATTGAGCGGAGGCGTGCTGCTGGGTATAGGTCCGATGAGGACCTGTCGGCGGAGGCAGAGCTTAGGCGGAGGACCGCCCATAAGAAGGCCGGTGACAAGAAAGATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

35.27

Weight (kDa)

5.7

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 868
AccII CGCG 2 cut(s) 251, 494
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 2 cut(s) 128, 172
AcuI CTGAAG 2 cut(s) 255, 390
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 2 cut(s) 224, 805
AfiI CCNNNNNNNGG 2 cut(s) 910, 946
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 3 cut(s) 37, 171, 797
AjiI CACGTC 1 cut(s) 765
AluBI AGCT 2 cut(s) 338, 922
AluI AGCT 2 cut(s) 338, 922
Alw26I GTCTC 4 cut(s) 404, 599, 644, 689
AlwI GGATC 1 cut(s) 782
AoxI GGCC 5 cut(s) 182, 381, 555, 728, 948
ApaI GGGCCC 1 cut(s) 732
ApeKI GCWGC 2 cut(s) 644, 878
ApoI RAATTY 2 cut(s) 128, 172
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 5 cut(s) 728, 729, 891, 901, 933
AsuHPI GGTGA 6 cut(s) 106, 170, 589, 634, 856, 965
AvaII GGWCC 3 cut(s) 891, 901, 933
BaeGI GKGCMC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 732
BbsI GAAGAC 3 cut(s) 353, 473, 536
BbvI GCAGC 2 cut(s) 631, 865
BccI CCATC 1 cut(s) 841
BceAI ACGGC 2 cut(s) 169, 241
BciVI GTATCC 1 cut(s) 655
BcoDI GTCTC 4 cut(s) 404, 599, 644, 689
BfaI CTAG 2 cut(s) 102, 275
BfoI RGCGCY 1 cut(s) 678
BfuI GTATCC 1 cut(s) 655
BisI GCNGC 4 cut(s) 150, 360, 645, 879
BlsI GCNGC 4 cut(s) 151, 361, 646, 880
BmcAI AGTACT 1 cut(s) 805
Bme18I GGWCC 3 cut(s) 891, 901, 933
BmgBI CACGTC 1 cut(s) 765
BmgT120I GGNCC 5 cut(s) 728, 729, 891, 901, 933
BmiI GGNNCC 2 cut(s) 729, 730
BmsI GCATC 3 cut(s) 445, 724, 841
BpiI GAAGAC 3 cut(s) 353, 473, 536
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 5 cut(s) 339, 459, 504, 546, 923
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 5 cut(s) 135, 261, 369, 426, 558
BsaWI WCCGGW 1 cut(s) 833
BsaXI ACNNNNNCTCC 4 cut(s) 749, 779, 828, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 910, 946
Bse118I RCCGGY 2 cut(s) 180, 950
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 5 cut(s) 135, 261, 369, 426, 558
BseGI GGATG 1 cut(s) 856
BseLI CCNNNNNNNGG 2 cut(s) 910, 946
BseMII CTCAG 2 cut(s) 94, 573
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 3 cut(s) 170, 314, 389
BseSI GKGCMC 1 cut(s) 732
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 631, 865
BseYI CCCAGC 1 cut(s) 881
Bsh1236I CGCG 2 cut(s) 251, 494
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 5 cut(s) 184, 383, 557, 730, 950
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 3 cut(s) 181, 834, 951
BslFI GGGAC 2 cut(s) 221, 526
BslI CCNNNNNNNGG 2 cut(s) 910, 946
BsmAI GTCTC 4 cut(s) 404, 599, 644, 689
BsmBI CGTCTC 2 cut(s) 599, 689
BsmFI GGGAC 2 cut(s) 221, 526
BsnI GGCC 5 cut(s) 184, 383, 557, 730, 950
Bso31I GGTCTC 1 cut(s) 644
Bsp120I GGGCCC 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 732
Bsp143I GATC 1 cut(s) 787
Bsp19I CCATGG 2 cut(s) 261, 369
BspANI GGCC 5 cut(s) 184, 383, 557, 730, 950
BspCNI CTCAG 2 cut(s) 93, 574
BspFNI CGCG 2 cut(s) 251, 494
BspLI GGNNCC 2 cut(s) 729, 730
BspPI GGATC 1 cut(s) 782
BspTNI GGTCTC 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 868
BsrFI RCCGGY 2 cut(s) 180, 950
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 2 cut(s) 180, 950
BssECI CCNNGG 5 cut(s) 135, 261, 369, 426, 558
BssMI GATC 1 cut(s) 787
BssT1I CCWWGG 4 cut(s) 261, 369, 426, 558
Bst4CI ACNGT 5 cut(s) 490, 568, 610, 655, 667
Bst6I CTCTTC 1 cut(s) 792
BstC8I GCNNGC 5 cut(s) 7, 245, 249, 705, 876
BstDEI CTNAG 8 cut(s) 80, 339, 459, 504, 546, 582, 690, 923
BstDSI CCRYGG 2 cut(s) 261, 369
BstF5I GGATG 1 cut(s) 856
BstFNI CGCG 2 cut(s) 251, 494
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 1 cut(s) 790
BstMAI GTCTC 4 cut(s) 404, 599, 644, 689
BstMBI GATC 1 cut(s) 787
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 8 cut(s) 335, 422, 455, 500, 533, 542, 683, 743
BstSLI GKGCMC 1 cut(s) 732
BstUI CGCG 2 cut(s) 251, 494
BstV1I GCAGC 2 cut(s) 631, 865
BstV2I GAAGAC 3 cut(s) 353, 473, 536
BstZI CGGCCG 1 cut(s) 182
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 5 cut(s) 184, 383, 557, 730, 950
BtgI CCRYGG 2 cut(s) 261, 369
BtrI CACGTC 1 cut(s) 765
BtsCI GGATG 1 cut(s) 856
BtsI GCAGTG 2 cut(s) 753, 834
BtsIMutI CAGTG 3 cut(s) 672, 753, 834
Cac8I GCNNGC 5 cut(s) 7, 245, 249, 705, 876
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 2 cut(s) 180, 950
Cfr13I GGNCC 5 cut(s) 728, 729, 891, 901, 933
Csp6I GTAC 2 cut(s) 223, 804
CviAII CATG 3 cut(s) 262, 370, 478
CviQI GTAC 2 cut(s) 223, 804
DdeI CTNAG 8 cut(s) 80, 339, 459, 504, 546, 582, 690, 923
DpnI GATC 1 cut(s) 789
DpnII GATC 1 cut(s) 787
DraIII CACNNNGTG 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 7 cut(s) 109, 167, 377, 617, 629, 926, 943
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 4 cut(s) 261, 369, 426, 558
Eco24I GRGCYC 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 3 cut(s) 891, 901, 933
Eco52I CGGCCG 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 255, 390
EcoO109I RGGNCCY 2 cut(s) 728, 901
EcoT14I CCWWGG 4 cut(s) 261, 369, 426, 558
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 4 cut(s) 261, 369, 426, 558
Esp3I CGTCTC 2 cut(s) 599, 689
FaeI CATG 3 cut(s) 265, 373, 481
FaqI GGGAC 2 cut(s) 221, 526
FatI CATG 3 cut(s) 261, 369, 477
FauI CCCGC 2 cut(s) 282, 529
Fnu4HI GCNGC 4 cut(s) 150, 360, 645, 879
FokI GGATG 1 cut(s) 863
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 4 cut(s) 150, 360, 645, 879
FspBI CTAG 2 cut(s) 102, 275
GlaI GCGC 1 cut(s) 676
GluI GCNGC 4 cut(s) 150, 360, 645, 879
GsaI CCCAGC 1 cut(s) 885
GsuI CTGGAG 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 5 cut(s) 184, 383, 557, 730, 950
HapII CCGG 3 cut(s) 181, 834, 951
HhaI GCGC 1 cut(s) 677
Hin1II CATG 3 cut(s) 265, 373, 481
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HinfI GANTC 3 cut(s) 25, 167, 514
HpaII CCGG 3 cut(s) 181, 834, 951
HphI GGTGA 6 cut(s) 106, 170, 589, 634, 856, 965
Hpy188I TCNGA 6 cut(s) 83, 136, 409, 769, 814, 895
HpyCH4III ACNGT 5 cut(s) 490, 568, 610, 655, 667
HpyCH4IV ACGT 2 cut(s) 395, 764
HpyF10VI GCNNNNNNNGC 8 cut(s) 335, 422, 455, 500, 533, 542, 683, 743
HpyF3I CTNAG 8 cut(s) 80, 339, 459, 504, 546, 582, 690, 923
HpySE526I ACGT 2 cut(s) 395, 764
Hsp92II CATG 3 cut(s) 265, 373, 481
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 1 cut(s) 787
LpnPI CCDG 9 cut(s) 187, 194, 468, 689, 804, 847, 867, 917, 964
Lsp1109I GCAGC 2 cut(s) 631, 865
LweI GCATC 3 cut(s) 445, 724, 841
MaeI CTAG 2 cut(s) 102, 275
MaeII ACGT 2 cut(s) 395, 764
MaeIII GTNAC 3 cut(s) 577, 829, 953
MalI GATC 1 cut(s) 789
MbiI CCGCTC 1 cut(s) 868
MboI GATC 1 cut(s) 787
MboII GAAGA 7 cut(s) 25, 278, 358, 478, 541, 809, 830
MhlI GDGCHC 1 cut(s) 732
MluCI AATT 2 cut(s) 128, 172
MlyI GAGTC 1 cut(s) 508
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 3 cut(s) 181, 834, 951
MvnI CGCG 2 cut(s) 251, 494
MwoI GCNNNNNNNGC 8 cut(s) 335, 422, 455, 500, 533, 542, 683, 743
NcoI CCATGG 2 cut(s) 261, 369
NdeII GATC 1 cut(s) 787
NlaIII CATG 3 cut(s) 265, 373, 481
NlaIV GGNNCC 2 cut(s) 729, 730
NmuCI GTSAC 3 cut(s) 577, 829, 953
PfeI GAWTC 2 cut(s) 25, 167
PkrI GCNGC 4 cut(s) 151, 361, 646, 880
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PpuMI RGGWCCY 1 cut(s) 901
Psp5II RGGWCCY 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 881
PspN4I GGNNCC 2 cut(s) 729, 730
PspOMI GGGCCC 1 cut(s) 728
PspPI GGNCC 5 cut(s) 728, 729, 891, 901, 933
PspPPI RGGWCCY 1 cut(s) 901
RsaI GTAC 2 cut(s) 224, 805
RsaNI GTAC 2 cut(s) 223, 804
SatI GCNGC 4 cut(s) 150, 360, 645, 879
Sau3AI GATC 1 cut(s) 787
Sau96I GGNCC 5 cut(s) 728, 729, 891, 901, 933
ScaI AGTACT 1 cut(s) 805
SchI GAGTC 1 cut(s) 508
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 3 cut(s) 445, 724, 841
SinI GGWCC 3 cut(s) 891, 901, 933
Sse9I AATT 2 cut(s) 128, 172
SspMI CTAG 2 cut(s) 102, 275
StyI CCWWGG 4 cut(s) 261, 369, 426, 558
TaaI ACNGT 5 cut(s) 490, 568, 610, 655, 667
TaiI ACGT 2 cut(s) 398, 767
TaqI TCGA 1 cut(s) 142
TasI AATT 2 cut(s) 128, 172
TatI WGTACW 1 cut(s) 803
TauI GCSGC 2 cut(s) 152, 362
TfiI GAWTC 2 cut(s) 25, 167
TscAI CASTG 3 cut(s) 672, 753, 834
TseFI GTSAC 3 cut(s) 577, 829, 953
TseI GCWGC 2 cut(s) 644, 878
Tsp45I GTSAC 3 cut(s) 577, 829, 953
TspDTI ATGAA 3 cut(s) 320, 348, 831
TspRI CASTG 3 cut(s) 672, 753, 834
VpaK11BI GGWCC 3 cut(s) 891, 901, 933
XapI RAATTY 2 cut(s) 128, 172
XspI CTAG 2 cut(s) 102, 275
ZrmI AGTACT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.