MD00G1115500.v1.1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001595
Physical Location & Seq
Reverse (-)
24541359 .. 24542434
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1115500.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGCAGTATTTCACGTCGCAAAAAATGTTATGTTCAACCTCTCCAGATCTTTTCCTCGATCCTCTCAGTCACTCTCCCTCAGATATTCATCTCAGAAGGTATCCCGCGTTTGCTTCACCACCGCCTCCAAATTCTCCATGGGACGAAATGCGGCCGGAGAGAACAAGGGATATGACAACAACAACAAGAACTGGATGAATAAGGAACGAGAGTACGGGTCGGCGAACGTGAACAGCAGAGCGAAAGAAACCATGGGAGAAGGGCTAGAAAAGACGAAGCGAAAAGCAGAGGAGACGAAAGAGACGACCAAGGATTACGCGGAGGAAGCAAAGGAGAAGGCAAAGAGAGCAGCCGAGACTATGGCGGAGAAGGCGAAAGAGGGAACGAACAGAGCAGCGGAGACGGCTGAGAGCACCAAGGAGAAAGCTAAAGAGTACGGTTACGAGACAAAGGAGAAGACCGAGGAGGTGGCGGACACACTGACAGAAAAAGCGAAGGAGGGGACTCAGAGGGCAGCCGAGACAGCGGAGAGCGCGAAGGAGAAGGCCAAAGAGAATATGTGGGGGATGAAGGAGAAAACAGAGGATGCGGTGGGAACTGTGGCGGAGAAGGTGAAGGAGGGGACTAGTAAGGCGGCGGAGACGGCAAAGGGCACAGTGAAAGGGGCGTGGGGGGCGGTGAAGGAGACAGGGCAGAAGATTAAGGAGACGGTGGTAGCTCCTGATGAGGAAGTAGGAGCGGTGGCCATTGATGATGACTCTACTAGTGAGAGTGATGTGGATGTTGACGTGGATGGCGATGGAGTGGCGGAAGGGAAGGTGATGGAAGCGGATGTGGTGGAACTAAAGGCGGCGTGCCGGCAAGGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.55

Weight (kDa)

5.46

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 740
AccII CGCG 3 cut(s) 108, 320, 536
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 153, 744
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 2 cut(s) 215, 437
AgsI TTSAA 1 cut(s) 37
AhlI ACTAGT 2 cut(s) 626, 764
AjiI CACGTC 2 cut(s) 16, 790
AluBI AGCT 2 cut(s) 428, 719
AluI AGCT 2 cut(s) 428, 719
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 9 cut(s) 287, 296, 350, 395, 440, 515, 635, 680, 701
AlwI GGATC 1 cut(s) 54
AoxI GGCC 4 cut(s) 153, 546, 744, 866
ApeKI GCWGC 3 cut(s) 350, 395, 515
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 866
AsuHPI GGTGA 4 cut(s) 109, 625, 691, 832
BaeGI GKGCMC 1 cut(s) 656
BalI TGGCCA 1 cut(s) 746
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 362, 407, 527
BccI CCATC 3 cut(s) 788, 794, 817
BceAI ACGGC 2 cut(s) 420, 660
BciVI GTATCC 1 cut(s) 112
BcoDI GTCTC 9 cut(s) 287, 296, 350, 395, 440, 515, 635, 680, 701
BcuI ACTAGT 2 cut(s) 626, 764
BfaI CTAG 3 cut(s) 266, 627, 765
BfuI GTATCC 1 cut(s) 112
BglII AGATCT 1 cut(s) 47
BisI GCNGC 6 cut(s) 153, 351, 396, 516, 636, 852
BlsI GCNGC 6 cut(s) 154, 352, 397, 517, 637, 853
BmgBI CACGTC 2 cut(s) 16, 790
BmgT120I GGNCC 1 cut(s) 866
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 464
BpmI CTGGAG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 88
BsaJI CCNNGG 5 cut(s) 138, 252, 309, 417, 462
Bse118I RCCGGY 1 cut(s) 858
Bse1I ACTGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 88
BseDI CCNNGG 5 cut(s) 138, 252, 309, 417, 462
BseGI GGATG 6 cut(s) 201, 573, 592, 787, 799, 838
BseJI GATNNNNATC 1 cut(s) 88
BseMII CTCAG 5 cut(s) 80, 94, 107, 399, 521
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 305, 479
BseSI GKGCMC 1 cut(s) 656
BseX3I CGGCCG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 362, 407, 527
Bsh1236I CGCG 3 cut(s) 108, 320, 536
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 4 cut(s) 155, 548, 746, 868
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 416
BsiSI CCGG 2 cut(s) 156, 859
BslFI GGGAC 3 cut(s) 156, 517, 637
BsmAI GTCTC 9 cut(s) 287, 296, 350, 395, 440, 515, 635, 680, 701
BsmBI CGTCTC 5 cut(s) 287, 296, 395, 635, 701
BsmFI GGGAC 3 cut(s) 156, 517, 637
BsnI GGCC 4 cut(s) 155, 548, 746, 868
Bsp1286I GDGCHC 2 cut(s) 416, 656
Bsp143I GATC 2 cut(s) 47, 59
Bsp19I CCATGG 2 cut(s) 138, 252
BspANI GGCC 4 cut(s) 155, 548, 746, 868
BspCNI CTCAG 5 cut(s) 79, 93, 106, 400, 520
BspFNI CGCG 3 cut(s) 108, 320, 536
BspPI GGATC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 740
BsrFI RCCGGY 1 cut(s) 858
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 858
BssECI CCNNGG 5 cut(s) 138, 252, 309, 417, 462
BssMI GATC 2 cut(s) 47, 59
BssT1I CCWWGG 4 cut(s) 138, 252, 309, 417
Bst4CI ACNGT 4 cut(s) 440, 601, 658, 712
BstC8I GCNNGC 2 cut(s) 856, 860
BstDEI CTNAG 5 cut(s) 66, 80, 93, 408, 507
BstDSI CCRYGG 2 cut(s) 138, 252
BstF5I GGATG 6 cut(s) 201, 573, 592, 787, 799, 838
BstFNI CGCG 3 cut(s) 108, 320, 536
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 2 cut(s) 50, 62
BstMAI GTCTC 9 cut(s) 287, 296, 350, 395, 440, 515, 635, 680, 701
BstMBI GATC 2 cut(s) 47, 59
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 8 cut(s) 326, 347, 371, 404, 524, 533, 644, 674
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 3 cut(s) 108, 320, 536
BstV1I GCAGC 3 cut(s) 362, 407, 527
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BstZI CGGCCG 1 cut(s) 153
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 4 cut(s) 155, 548, 746, 868
BtgI CCRYGG 2 cut(s) 138, 252
BtgZI GCGATG 1 cut(s) 813
BtrI CACGTC 2 cut(s) 16, 790
BtsCI GGATG 6 cut(s) 201, 573, 592, 787, 799, 838
BtsIMutI CAGTG 2 cut(s) 479, 663
Cac8I GCNNGC 2 cut(s) 856, 860
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 858
Cfr13I GGNCC 1 cut(s) 866
Csp6I GTAC 2 cut(s) 214, 436
CviAII CATG 2 cut(s) 139, 253
CviQI GTAC 2 cut(s) 214, 436
DdeI CTNAG 5 cut(s) 66, 80, 93, 408, 507
DpnI GATC 2 cut(s) 49, 61
DpnII GATC 2 cut(s) 47, 59
EaeI YGGCCR 2 cut(s) 153, 744
EagI CGGCCG 1 cut(s) 153
EciI GGCGGA 5 cut(s) 380, 488, 620, 653, 824
EclXI CGGCCG 1 cut(s) 153
Eco130I CCWWGG 4 cut(s) 138, 252, 309, 417
Eco52I CGGCCG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 866
EcoT14I CCWWGG 4 cut(s) 138, 252, 309, 417
ErhI CCWWGG 4 cut(s) 138, 252, 309, 417
Esp3I CGTCTC 5 cut(s) 287, 296, 395, 635, 701
FaeI CATG 2 cut(s) 142, 256
FaiI YATR 6 cut(s) 32, 140, 174, 254, 362, 560
FaqI GGGAC 3 cut(s) 156, 517, 637
FatI CATG 2 cut(s) 138, 252
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 6 cut(s) 153, 351, 396, 516, 636, 852
FokI GGATG 6 cut(s) 208, 580, 599, 794, 806, 845
Fsp4HI GCNGC 6 cut(s) 153, 351, 396, 516, 636, 852
FspBI CTAG 3 cut(s) 266, 627, 765
GlaI GCGC 1 cut(s) 535
GluI GCNGC 6 cut(s) 153, 351, 396, 516, 636, 852
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 4 cut(s) 155, 548, 746, 868
HapII CCGG 2 cut(s) 156, 859
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 142, 256
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HinfI GANTC 2 cut(s) 505, 758
HpaII CCGG 2 cut(s) 156, 859
HphI GGTGA 4 cut(s) 109, 625, 691, 832
Hpy166II GTNNAC 2 cut(s) 232, 787
Hpy188I TCNGA 3 cut(s) 83, 96, 510
Hpy188III TCNNGA 2 cut(s) 45, 722
Hpy8I GTNNAC 2 cut(s) 232, 787
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 4 cut(s) 440, 601, 658, 712
HpyCH4IV ACGT 3 cut(s) 15, 228, 789
HpyF10VI GCNNNNNNNGC 8 cut(s) 326, 347, 371, 404, 524, 533, 644, 674
HpyF3I CTNAG 5 cut(s) 66, 80, 93, 408, 507
HpySE526I ACGT 3 cut(s) 15, 228, 789
Hsp92II CATG 2 cut(s) 142, 256
HspAI GCGC 1 cut(s) 534
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
Kzo9I GATC 2 cut(s) 47, 59
LmnI GCTCC 2 cut(s) 724, 737
LpnPI CCDG 5 cut(s) 58, 169, 178, 675, 735
Lsp1109I GCAGC 3 cut(s) 362, 407, 527
LweI GCATC 1 cut(s) 577
MaeI CTAG 3 cut(s) 266, 627, 765
MaeII ACGT 3 cut(s) 15, 228, 789
MaeIII GTNAC 2 cut(s) 69, 440
MalI GATC 2 cut(s) 49, 61
MbiI CCGCTC 1 cut(s) 740
MboI GATC 2 cut(s) 47, 59
MboII GAAGA 2 cut(s) 469, 709
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 416, 656
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 2 cut(s) 499, 752
Mox20I TGGCCA 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 858
MscI TGGCCA 1 cut(s) 746
MseI TTAA 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 2 cut(s) 398, 527
MspI CCGG 2 cut(s) 156, 859
MvnI CGCG 3 cut(s) 108, 320, 536
MwoI GCNNNNNNNGC 8 cut(s) 326, 347, 371, 404, 524, 533, 644, 674
NaeI GCCGGC 1 cut(s) 860
NcoI CCATGG 2 cut(s) 138, 252
NdeII GATC 2 cut(s) 47, 59
NgoMIV GCCGGC 1 cut(s) 858
NlaIII CATG 2 cut(s) 142, 256
NmeAIII GCCGAG 2 cut(s) 379, 544
NmuCI GTSAC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 2 cut(s) 302, 795
PdiI GCCGGC 1 cut(s) 860
PkrI GCNGC 6 cut(s) 154, 352, 397, 517, 637, 853
PleI GAGTC 2 cut(s) 499, 752
PpsI GAGTC 2 cut(s) 499, 752
PspPI GGNCC 1 cut(s) 866
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 2 cut(s) 215, 437
RsaNI GTAC 2 cut(s) 214, 436
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 6 cut(s) 153, 351, 396, 516, 636, 852
Sau3AI GATC 2 cut(s) 47, 59
Sau96I GGNCC 1 cut(s) 866
SchI GAGTC 2 cut(s) 499, 752
SduI GDGCHC 2 cut(s) 416, 656
SfaNI GCATC 1 cut(s) 577
SpeI ACTAGT 2 cut(s) 626, 764
Sse9I AATT 1 cut(s) 131
SspMI CTAG 3 cut(s) 266, 627, 765
StyI CCWWGG 4 cut(s) 138, 252, 309, 417
TaaI ACNGT 4 cut(s) 440, 601, 658, 712
TaiI ACGT 3 cut(s) 18, 231, 792
TaqI TCGA 1 cut(s) 58
TaqII GACCGA 1 cut(s) 476
TasI AATT 1 cut(s) 131
TauI GCSGC 3 cut(s) 155, 638, 854
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 2 cut(s) 486, 663
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 3 cut(s) 350, 395, 515
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 3 cut(s) 78, 212, 584
TspRI CASTG 2 cut(s) 486, 663
XapI RAATTY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XspI CTAG 3 cut(s) 266, 627, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.