Rw5G006350

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001595
Physical Location & Seq
Forward (+)
6529309 .. 6530261
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006350.1

Sequence Viewer

Length: 597 bp
ATGGCAGCCAGCAATGTCATCTTCAACCTCTCAAGGTCCTCATTTCCTCAGTCCCCAGTTTCACAGTCCCTCAGTCCCTCTCTCAAAACCTCCAAGGTCTGCTTCAACTCCTCCTCCAACTTCTCCAAGGTTGGAAATGCGGCAGAGAACAGTAGGAACTCAAGTTTTAGCCGGGCGTATGACGACAAGGACTGGAGTACTAAAGCAAAGCAAACCCTGGAAGACGATGTCGAGGGTGGAAAGCAGCGCTTCGAGGAAATGAAGGGAGCAGCGACCGAGTACGCCAAAGACACGGTGGAGAACATCAAAGATGCGGCGGCGACTATAGGAGAGAAGGCCAAGGACGGGTCGGACAAGGTGGGGGAGTCCGCGGAGAGTACCATGGAGAAGGTAAAGAAGTATGCAGATGGTGCAACAGAGAAGACAAAAGACGCGGCGGAGACTATAACGGGGGACGCTAACAAGGCGGTGGACTCCACAGTGAGTGCCAAGGACAAGGCTTACGATGCGGCGGAGAGTGGGGCAGAGACGGTGAAAGATAAGGTGAACGAGGGGACGAGCAAGACGGCGGACGCGGTGAAGAATTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

198

Amino Acids

21.02

Weight (kDa)

5.28

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 371, 434, 575
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 3 cut(s) 199, 281, 379
AfeI AGCGCT 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 25, 106, 589
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
Alw26I GTCTC 2 cut(s) 434, 521
Aor51HI AGCGCT 1 cut(s) 248
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 3 cut(s) 5, 244, 269
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 3 cut(s) 544, 556, 589
AvaII GGWCC 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 228, 428
BbvI GCAGC 3 cut(s) 17, 256, 281
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 582
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 434, 521
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 250
BisI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 510
BlsI GCNGC 8 cut(s) 7, 142, 246, 271, 316, 319, 436, 511
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 173, 218
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 173, 218
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 301, 496
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 228, 428
BpmI CTGGAG 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 16, 145
BpuMI CCSGG 1 cut(s) 173
BsaJI CCNNGG 7 cut(s) 93, 126, 216, 339, 369, 381, 489
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 2 cut(s) 56, 197
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 7 cut(s) 93, 126, 216, 339, 369, 381, 489
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 62, 85
BseNI ACTGG 2 cut(s) 56, 197
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 3 cut(s) 17, 256, 281
Bsh1236I CGCG 3 cut(s) 371, 434, 575
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 5 cut(s) 37, 52, 60, 467, 568
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 434, 521
BsmBI CGTCTC 1 cut(s) 521
BsmFI GGGAC 5 cut(s) 37, 52, 60, 467, 568
BsnI GGCC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 381
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 61, 84
BspFNI CGCG 3 cut(s) 371, 434, 575
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 56, 197
BssECI CCNNGG 7 cut(s) 93, 126, 216, 339, 369, 381, 489
BssT1I CCWWGG 5 cut(s) 93, 126, 339, 381, 489
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 5 cut(s) 66, 152, 295, 481, 532
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 48, 71
BstDSI CCRYGG 2 cut(s) 369, 381
BstFNI CGCG 3 cut(s) 371, 434, 575
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstMAI GTCTC 2 cut(s) 434, 521
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 410, 464, 506
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 171, 216
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 3 cut(s) 371, 434, 575
BstV1I GCAGC 3 cut(s) 17, 256, 281
BstV2I GAAGAC 2 cut(s) 228, 428
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 2 cut(s) 369, 381
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 36
Cfr42I CCGCGG 1 cut(s) 372
CseI GACGC 3 cut(s) 440, 464, 581
Csp6I GTAC 3 cut(s) 198, 280, 378
CviAII CATG 1 cut(s) 382
CviJI RGCY 4 cut(s) 8, 171, 338, 500
CviKI_1 RGCY 4 cut(s) 8, 171, 338, 500
CviQI GTAC 3 cut(s) 198, 280, 378
DdeI CTNAG 2 cut(s) 48, 71
EciI GGCGGA 3 cut(s) 452, 527, 584
Eco130I CCWWGG 5 cut(s) 93, 126, 339, 381, 489
Eco47I GGWCC 1 cut(s) 36
Eco47III AGCGCT 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 5 cut(s) 93, 126, 339, 381, 489
ErhI CCWWGG 5 cut(s) 93, 126, 339, 381, 489
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 1 cut(s) 385
FaiI YATR 5 cut(s) 180, 326, 383, 402, 446
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 233, 265
FaqI GGGAC 5 cut(s) 37, 52, 60, 467, 568
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 510
Fsp4HI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 510
GlaI GCGC 1 cut(s) 248
GluI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 510
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 172
HgaI GACGC 3 cut(s) 440, 464, 581
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 2 cut(s) 365, 473
HpaII CCGG 1 cut(s) 172
HphI GGTGA 3 cut(s) 544, 556, 589
Hpy166II GTNNAC 2 cut(s) 472, 547
Hpy188I TCNGA 1 cut(s) 352
Hpy8I GTNNAC 2 cut(s) 472, 547
HpyAV CCTTC 3 cut(s) 256, 328, 382
HpyCH4III ACNGT 5 cut(s) 66, 152, 295, 481, 532
HpyCH4V TGCA 2 cut(s) 404, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 464, 506
HpyF3I CTNAG 2 cut(s) 48, 71
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 22, 69, 178, 185, 203, 230
Lsp1109I GCAGC 3 cut(s) 17, 256, 281
LweI GCATC 2 cut(s) 301, 496
MboII GAAGA 4 cut(s) 13, 233, 433, 592
MluCI AATT 1 cut(s) 583
MlyI GAGTC 2 cut(s) 374, 467
MmeI TCCRAC 3 cut(s) 112, 141, 330
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 173, 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 3 cut(s) 371, 434, 575
MwoI GCNNNNNNNGC 3 cut(s) 410, 464, 506
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 1 cut(s) 381
NlaIII CATG 1 cut(s) 385
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 8 cut(s) 7, 142, 246, 271, 316, 319, 436, 511
PleI GAGTC 2 cut(s) 373, 467
PpsI GAGTC 2 cut(s) 373, 467
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 3 cut(s) 199, 281, 379
RsaNI GTAC 3 cut(s) 198, 280, 378
SacII CCGCGG 1 cut(s) 372
SatI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 510
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 2 cut(s) 374, 467
ScrFI CCNGG 2 cut(s) 173, 218
SetI ASST 8 cut(s) 30, 38, 92, 99, 132, 360, 393, 546
SfaNI GCATC 2 cut(s) 301, 496
SfcI CTRYAG 1 cut(s) 324
Sfr303I CCGCGG 1 cut(s) 372
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 31, 160
SmoI CTYRAG 2 cut(s) 31, 160
Sse9I AATT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 171, 216
StyI CCWWGG 5 cut(s) 93, 126, 339, 381, 489
TaaI ACNGT 5 cut(s) 66, 152, 295, 481, 532
TaqI TCGA 2 cut(s) 231, 252
TaqII GACCGA 1 cut(s) 290
TasI AATT 1 cut(s) 583
TatI WGTACW 1 cut(s) 197
TauI GCSGC 5 cut(s) 143, 317, 320, 437, 512
TscAI CASTG 1 cut(s) 486
TseI GCWGC 3 cut(s) 5, 244, 269
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 1 cut(s) 486
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.