Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Reverse (-)

29448551 .. 29449641

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTAGTAATTTCCATGGCAAAAAATATCATCTTCAACCTCTCCAAGTCTTTCCCTCAAACCCCTTCATCACTCTCTCTCAGAAATTCCTCTCACAAAGTCTCGAGAGTCTGCTTCGCCTCCGCCTCCAAATCCTCCGAGGGTCGAAATGCACCAGAAGGGAATAGAGATTCGAGGGCTGACTGGGCATATGATGACAAGAAGTGGAGGAATGAGAACGTGAATTACAAAGGAAAGGATCCAACAGATGAACTCAAGGATAAGACGAAGAGCGCAGCGGAGACCATGGCGGAGAAGGCTAAAGAGGGAGTGAACAGAGCAGCGGAGACGGCAGAGAGCGCCAAGGAGAAAGCGAAACAGTACGGTTATGAAACAAGGGAGAAAACGAAAGAAATGACCGACACTGCGGCTGCGAAGGCAAAAGATGGAACTTATGAGGTCGTGGAGACGGCGGAGCAGGCCAAGGAGAAGGCGACAGAGAATGTTTGGAGTATGAAGGAGAAAACAGAGGACGTGGCAGAAACGGTGGCGGAGAAGGTGAAGGAGGGGACGAGCAAGGCAGCAGAGACGGCGAAGGACACAGTGAAGGGGGCGTGGGGGGCCGTGGAGGAGGCGGGGCATAAGATCAAGGAGACAGTGGTTGGGACTTCATCGGACTCTGACAATGAGGTGGCGGTGGAGGAGAATGTTGTGGGGGTTTTGGATGACGGTGTGGAGGTGGTGGAAATATTGGATGAGGAGGGGAATGTTGTGGACGTTCTGGATGAGGATGTGGTGGTGGTGGAGATATTAGATGAGAAGGGGAATGTTGTGGATGTTAGGAGGCGGATTCGGAGGCCTGAAGATGATGTGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

31.44

Weight (kDa)

4.93

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	233, 246
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	514
Alw26I	GTCTC	6 cut(s)	106, 275, 320, 440, 560, 626
AlwI	GGATC	2 cut(s)	233, 246
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	3 cut(s)	459, 600, 836
ApeKI	GCWGC	4 cut(s)	275, 320, 410, 560
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	275, 341
AspS9I	GGNCC	1 cut(s)	600
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	287, 332, 397, 572
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	4 cut(s)	345, 465, 585, 587
BcoDI	GTCTC	6 cut(s)	106, 275, 320, 440, 560, 626
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	5 cut(s)	276, 321, 408, 411, 561
BlsI	GCNGC	5 cut(s)	277, 322, 409, 412, 562
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	2 cut(s)	240, 601
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	6 cut(s)	15, 138, 285, 342, 462, 603
Bse1I	ACTGG	1 cut(s)	188
BseDI	CCNNGG	6 cut(s)	15, 138, 285, 342, 462, 603
BseGI	GGATG	5 cut(s)	709, 739, 769, 775, 820
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	3 cut(s)	623, 695, 752
BseXI	GCAGC	4 cut(s)	287, 332, 397, 572
BshFI	GGCC	3 cut(s)	461, 602, 838
BsiHKCI	CYCGRG	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	562, 658
BsmAI	GTCTC	6 cut(s)	106, 275, 320, 440, 560, 626
BsmBI	CGTCTC	3 cut(s)	320, 440, 560
BsmFI	GGGAC	2 cut(s)	562, 658
BsnI	GGCC	3 cut(s)	461, 602, 838
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	238, 624
Bsp19I	CCATGG	2 cut(s)	15, 285
BspANI	GGCC	3 cut(s)	461, 602, 838
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	240, 601
BspPI	GGATC	2 cut(s)	233, 246
BspQI	GCTCTTC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	6 cut(s)	15, 138, 285, 342, 462, 603
BssMI	GATC	2 cut(s)	238, 624
BssT1I	CCWWGG	4 cut(s)	15, 285, 342, 462
Bst4CI	ACNGT	6 cut(s)	360, 365, 526, 583, 637, 710
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	3 cut(s)	15, 285, 603
BstF5I	GGATG	5 cut(s)	709, 739, 769, 775, 820
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	275, 341
BstKTI	GATC	2 cut(s)	241, 627
BstMAI	GTCTC	6 cut(s)	106, 275, 320, 440, 560, 626
BstMBI	GATC	2 cut(s)	238, 624
BstMWI	GCNNNNNNNGC	8 cut(s)	185, 296, 329, 338, 416, 458, 569, 599
BstV1I	GCAGC	4 cut(s)	287, 332, 397, 572
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	461, 602, 838
BtgI	CCRYGG	3 cut(s)	15, 285, 603
BtrI	CACGTC	1 cut(s)	514
BtsCI	GGATG	5 cut(s)	709, 739, 769, 775, 820
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 588, 642
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	2 cut(s)	275, 341
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	16, 286
CviJI	RGCY	6 cut(s)	179, 299, 410, 461, 602, 838
CviKI_1	RGCY	6 cut(s)	179, 299, 410, 461, 602, 838
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	240, 626
DpnII	GATC	2 cut(s)	238, 624
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EciI	GGCGGA	5 cut(s)	112, 305, 467, 545, 841
Eco130I	CCWWGG	4 cut(s)	15, 285, 342, 462
Eco147I	AGGCCT	1 cut(s)	838
Eco31I	GGTCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	861
Eco88I	CYCGRG	1 cut(s)	103
EcoT14I	CCWWGG	4 cut(s)	15, 285, 342, 462
ErhI	CCWWGG	4 cut(s)	15, 285, 342, 462
Esp3I	CGTCTC	3 cut(s)	320, 440, 560
FaeI	CATG	2 cut(s)	19, 289
FaiI	YATR	8 cut(s)	17, 190, 192, 287, 369, 435, 494, 621
FaqI	GGGAC	2 cut(s)	562, 658
FatI	CATG	2 cut(s)	15, 285
FauI	CCCGC	1 cut(s)	607
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	276, 321, 408, 411, 561
FokI	GGATG	5 cut(s)	716, 746, 776, 782, 827
Fsp4HI	GCNGC	5 cut(s)	276, 321, 408, 411, 561
GlaI	GCGC	2 cut(s)	274, 340
GluI	GCNGC	5 cut(s)	276, 321, 408, 411, 561
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	461, 602, 838
HhaI	GCGC	2 cut(s)	275, 341
Hin1II	CATG	2 cut(s)	19, 289
Hin6I	GCGC	2 cut(s)	273, 339
HinP1I	GCGC	2 cut(s)	273, 339
HinfI	GANTC	4 cut(s)	108, 170, 656, 829
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	2 cut(s)	313, 754
Hpy188I	TCNGA	5 cut(s)	83, 139, 655, 661, 834
Hpy188III	TCNNGA	3 cut(s)	103, 105, 761
Hpy8I	GTNNAC	2 cut(s)	313, 754
HpyCH4III	ACNGT	6 cut(s)	360, 365, 526, 583, 637, 710
HpyCH4IV	ACGT	3 cut(s)	219, 513, 756
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	8 cut(s)	185, 296, 329, 338, 416, 458, 569, 599
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	3 cut(s)	219, 513, 756
Hsp92II	CATG	2 cut(s)	19, 289
HspAI	GCGC	2 cut(s)	273, 339
Kzo9I	GATC	2 cut(s)	238, 624
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	5 cut(s)	168, 169, 443, 746, 852
Lsp1109I	GCAGC	4 cut(s)	287, 332, 397, 572
MaeII	ACGT	3 cut(s)	219, 513, 756
MalI	GATC	2 cut(s)	240, 626
MboI	GATC	2 cut(s)	238, 624
MboII	GAAGA	3 cut(s)	25, 280, 854
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	3 cut(s)	9, 85, 223
MlyI	GAGTC	2 cut(s)	117, 650
MmeI	TCCRAC	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	278, 323
MwoI	GCNNNNNNNGC	8 cut(s)	185, 296, 329, 338, 416, 458, 569, 599
NcoI	CCATGG	2 cut(s)	15, 285
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	238, 624
NlaIII	CATG	2 cut(s)	19, 289
NlaIV	GGNNCC	2 cut(s)	240, 601
PaeR7I	CTCGAG	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	170, 829
PkrI	GCNGC	5 cut(s)	277, 322, 409, 412, 562
PleI	GAGTC	2 cut(s)	116, 650
PpsI	GAGTC	2 cut(s)	116, 650
PspN4I	GGNNCC	2 cut(s)	240, 601
PspPI	GGNCC	1 cut(s)	600
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	263
SatI	GCNGC	5 cut(s)	276, 321, 408, 411, 561
Sau3AI	GATC	2 cut(s)	238, 624
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	2 cut(s)	117, 650
SetI	ASST	8 cut(s)	42, 222, 441, 516, 540, 672, 720, 759
Sfr274I	CTCGAG	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	103, 254
SmoI	CTYRAG	2 cut(s)	103, 254
Sse9I	AATT	3 cut(s)	9, 85, 223
SseBI	AGGCCT	1 cut(s)	838
SspI	AATATT	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	838
StyI	CCWWGG	4 cut(s)	15, 285, 342, 462
TaaI	ACNGT	6 cut(s)	360, 365, 526, 583, 637, 710
TaiI	ACGT	3 cut(s)	222, 516, 759
TaqI	TCGA	3 cut(s)	104, 145, 173
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	3 cut(s)	9, 85, 223
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	170, 829
TscAI	CASTG	3 cut(s)	409, 588, 642
TseI	GCWGC	4 cut(s)	275, 320, 410, 560
TspDTI	ATGAA	5 cut(s)	57, 264, 384, 509, 639
TspRI	CASTG	3 cut(s)	409, 588, 642
XapI	RAATTY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.