Prupe.4G050100_v2.0.a1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001595
Physical Location & Seq
Forward (+)
2388848 .. 2390307
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G050100.1

Sequence Viewer

Length: 816 bp
ATGGCAGTCAACTCCATGGCTAAGAATCTCATCTTCAACCCTTCAAAATCTTTTCCTCAAAGCCCTTCAGCACTGTCTCCCAGATATTCCTCTCGCAAAGTCTCAAGGGTCTGCTTCAATACCTCTGCCACCAAATACTCGGAGGGTCAAAATGCTGCGGAAGATCATAGGGATTCAAGGGCAGACTGGGCCTACGATGACAAGAAGTGGAGGAACGAGGGGTCCGTTGACGCAAATAACAGAGGAAAAAATCCAGCAGAGGAAATGATAGACAGGACCAAGGACTTTACCCATGAAACGAAGGAGAGGACAAAGAGCGCAGCGGAGAAGGCGAAAGAGGGAACAAACAGAGCAGCCAAGACAGCAGTGAGCGCCAAGGAGAAAGCAAAACAATACGCCTACGAGACAAAGGAGAAGACGAAAGAGGTGGCGGGATCTGTAGCTGAGAAGGCCAAAGAGGGGACGTATAAGGTGGCGGAGATGGCGGCGAGCGCGAAGGAGAAGGCAAAAGAGAAGGCGAAGGAGATGAAGGAGAAAACAGAGGATGTGGCCGAAACGGTGGCGGATAAGGTGAAGGAGGGGACGAGCAAGGTGGCAGAGACGGCGAAGGACAAGGTGAAGGGGGAGTGGGGGGCGGCGAAGGAGACGGGGAAGAAGATTAAGGAGACTCTGGTGGGGAGTACTTCATCTGATTCTGATGATGAGGTGGAGGTGGTGCATGAGAAGGTTGTGGAAGTTTTGGATGAGAAGGGGAATGTTGTGGATGTTAGGAGGCGGATTCGCAAGCCTGAAGATGATGATGTGAAGAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.04

Weight (kDa)

8.95

Isoelectric Point (pI)

23.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 494
AciI CCGC 8 cut(s) 158, 323, 431, 476, 485, 563, 635, 775
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 2 cut(s) 51, 810
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 1 cut(s) 459
AgsI TTSAA 4 cut(s) 37, 45, 118, 177
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
Alw26I GTCTC 6 cut(s) 81, 106, 398, 593, 638, 659
AlwI GGATC 1 cut(s) 442
AoxI GGCC 3 cut(s) 189, 450, 549
ApeKI GCWGC 3 cut(s) 155, 320, 353
AspLEI GCGC 3 cut(s) 320, 374, 494
AspS9I GGNCC 3 cut(s) 189, 222, 276
AsuHPI GGTGA 2 cut(s) 583, 628
AvaII GGWCC 2 cut(s) 222, 276
BbsI GAAGAC 1 cut(s) 422
BbvI GCAGC 3 cut(s) 142, 332, 365
BccI CCATC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 618
BcoDI GTCTC 6 cut(s) 81, 106, 398, 593, 638, 659
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 5 cut(s) 156, 321, 354, 486, 636
BlsI GCNGC 5 cut(s) 157, 322, 355, 487, 637
BmcAI AGTACT 1 cut(s) 682
Bme18I GGWCC 2 cut(s) 222, 276
BmgT120I GGNCC 3 cut(s) 189, 222, 276
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 15, 279, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 15, 279, 375
BseGI GGATG 3 cut(s) 550, 748, 769
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 142, 332, 365
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 3 cut(s) 191, 452, 551
BslFI GGGAC 2 cut(s) 475, 595
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 6 cut(s) 81, 106, 398, 593, 638, 659
BsmBI CGTCTC 2 cut(s) 593, 638
BsmFI GGGAC 2 cut(s) 475, 595
BsnI GGCC 3 cut(s) 191, 452, 551
Bsp143I GATC 2 cut(s) 163, 434
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 8 cut(s) 158, 323, 431, 476, 485, 563, 635, 775
BspANI GGCC 3 cut(s) 191, 452, 551
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 442
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 3 cut(s) 15, 279, 375
BssMI GATC 2 cut(s) 163, 434
BssT1I CCWWGG 3 cut(s) 15, 279, 375
Bst4CI ACNGT 2 cut(s) 75, 559
BstC8I GCNNGC 2 cut(s) 490, 785
BstDEI CTNAG 2 cut(s) 21, 444
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 550, 748, 769
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 3 cut(s) 320, 374, 494
BstKTI GATC 2 cut(s) 166, 437
BstMAI GTCTC 6 cut(s) 81, 106, 398, 593, 638, 659
BstMBI GATC 2 cut(s) 163, 434
BstMWI GCNNNNNNNGC 8 cut(s) 188, 329, 362, 371, 449, 482, 491, 602
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 3 cut(s) 142, 332, 365
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 3 cut(s) 191, 452, 551
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 3 cut(s) 550, 748, 769
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 71, 372
Cac8I GCNNGC 2 cut(s) 490, 785
CfoI GCGC 3 cut(s) 320, 374, 494
Cfr13I GGNCC 3 cut(s) 189, 222, 276
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 681
CviAII CATG 3 cut(s) 16, 293, 719
CviJI RGCY 8 cut(s) 20, 63, 191, 356, 443, 452, 551, 787
CviKI_1 RGCY 8 cut(s) 20, 63, 191, 356, 443, 452, 551, 787
CviQI GTAC 1 cut(s) 681
DdeI CTNAG 2 cut(s) 21, 444
DpnI GATC 2 cut(s) 165, 436
DpnII GATC 2 cut(s) 163, 434
EaeI YGGCCR 1 cut(s) 549
EciI GGCGGA 3 cut(s) 491, 578, 790
Eco130I CCWWGG 3 cut(s) 15, 279, 375
Eco47I GGWCC 2 cut(s) 222, 276
Eco57I CTGAAG 2 cut(s) 51, 810
EcoT14I CCWWGG 3 cut(s) 15, 279, 375
ErhI CCWWGG 3 cut(s) 15, 279, 375
Esp3I CGTCTC 2 cut(s) 593, 638
FaeI CATG 3 cut(s) 19, 296, 722
FaiI YATR 5 cut(s) 17, 168, 294, 468, 720
FaqI GGGAC 2 cut(s) 475, 595
FatI CATG 3 cut(s) 15, 292, 718
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 5 cut(s) 156, 321, 354, 486, 636
FokI GGATG 3 cut(s) 557, 755, 776
Fsp4HI GCNGC 5 cut(s) 156, 321, 354, 486, 636
GlaI GCGC 3 cut(s) 319, 373, 493
GluI GCNGC 5 cut(s) 156, 321, 354, 486, 636
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 3 cut(s) 191, 452, 551
HgaI GACGC 1 cut(s) 239
HhaI GCGC 3 cut(s) 320, 374, 494
Hin1II CATG 3 cut(s) 19, 296, 722
Hin6I GCGC 3 cut(s) 318, 372, 492
HinP1I GCGC 3 cut(s) 318, 372, 492
HincII GTYRAC 2 cut(s) 10, 229
HindII GTYRAC 2 cut(s) 10, 229
HinfI GANTC 5 cut(s) 25, 173, 667, 692, 778
HphI GGTGA 2 cut(s) 583, 628
Hpy166II GTNNAC 2 cut(s) 10, 229
Hpy188I TCNGA 3 cut(s) 142, 691, 697
Hpy8I GTNNAC 2 cut(s) 10, 229
HpyCH4III ACNGT 2 cut(s) 75, 559
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 8 cut(s) 188, 329, 362, 371, 449, 482, 491, 602
HpyF3I CTNAG 2 cut(s) 21, 444
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 3 cut(s) 19, 296, 722
HspAI GCGC 3 cut(s) 318, 372, 492
Kzo9I GATC 2 cut(s) 163, 434
LpnPI CCDG 6 cut(s) 94, 172, 259, 267, 656, 801
Lsp1109I GCAGC 3 cut(s) 142, 332, 365
MaeII ACGT 1 cut(s) 464
MalI GATC 2 cut(s) 165, 436
MboI GATC 2 cut(s) 163, 434
MboII GAAGA 6 cut(s) 25, 173, 427, 664, 667, 803
MflI RGATCY 1 cut(s) 434
MlyI GAGTC 1 cut(s) 661
MseI TTAA 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 323
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 8 cut(s) 188, 329, 362, 371, 449, 482, 491, 602
NcoI CCATGG 1 cut(s) 15
NdeII GATC 2 cut(s) 163, 434
NlaIII CATG 3 cut(s) 19, 296, 722
NlaIV GGNNCC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 4 cut(s) 25, 173, 692, 778
PkrI GCNGC 5 cut(s) 157, 322, 355, 487, 637
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 3 cut(s) 189, 222, 276
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 5 cut(s) 156, 321, 354, 486, 636
Sau3AI GATC 2 cut(s) 163, 434
Sau96I GGNCC 3 cut(s) 189, 222, 276
ScaI AGTACT 1 cut(s) 682
SchI GAGTC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 222, 276
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SsiI CCGC 8 cut(s) 158, 323, 431, 476, 485, 563, 635, 775
StyI CCWWGG 3 cut(s) 15, 279, 375
TaaI ACNGT 2 cut(s) 75, 559
TaiI ACGT 1 cut(s) 467
TatI WGTACW 1 cut(s) 680
TauI GCSGC 2 cut(s) 488, 638
TfiI GAWTC 4 cut(s) 25, 173, 692, 778
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 2 cut(s) 78, 372
TseI GCWGC 3 cut(s) 155, 320, 353
TspDTI ATGAA 3 cut(s) 309, 542, 675
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 78, 372
VpaK11BI GGWCC 2 cut(s) 222, 276
ZrmI AGTACT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.