Rh5BG064800

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001595
Physical Location & Seq
Forward (+)
5359443 .. 5361948
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG064800.1

Sequence Viewer

Length: 969 bp
ATGGCGAGCCTTTCATTAGCGAAGAATCTCATCTTCAACCTCTCAAAGTCGTTTCCTCAATCCCAAGTTTCACTCTCTCTCAGACCCTCTCTCAAAATCTCCAGGGTCTGCTTCATCTCCGCCTCCAAATTCTCCGAGGGTCGAAATGCGGCGGAGAATAGGGATTCAAATTCTCACCGGGCGTATGCCGATAAGGACTGGAGGGACAAGGAAAGAGGGTACGGCTCTGCTGACTTGAGCAAGCACGCGAAAGAAACCATGGAAGAAGGACTAGAAAAAACCAAGCGGGAAGCAGAGGAGATGAAAGAGAGAGCGAAGGATTACGCCTACGAAGCTAAGGAGAAGACAAAGAGTGCGGCGGAAACCATGGAGGAGGAGACCAAAGAGGGAACGTATAAGGCTTCAGAGACAGTGGAGAGTGCCAAGGAGAAGGCAAAGGACTACGCTTATGATGCTAAGGAGAAGACGAAAGACATGGCTGGAACTGTGGCGGAGAAGGCTAAGGAGGGGACTCACAAGGTGGCGAAGACTGCGGGGAGTGCTAAGGAGAAGGCCAAGGACACGGTTTATGAGGCGACTGAGAAGGCGGAGGGTGTGGCGCAGACGGTGGCGGATAAGGGGAAGGGAGGGACACATAAGGCTGCGGAGACCGTGAAGGATACAGTGAAGGGCGCTTGGGAGGCGACTAAGGAGACGGGACAGGCAATCAAGGAGGCAGTTGTGGGGCCCGATGAGGAGGTGGCAGTGGTTGTGGAGGACACGTCAGATGATGATGTGGTGGTTGATCTTGTCGAAGGGAGTACTTCGTCCGATGAAGATGTGGCGGTGACCGGAGGGAAGGTGATGGATGCGGATGTCATTGAGCGGAGGCGGGCTGCTGGGTATAGGTCCGATGAGGACCTGTCGGCGGAGTCGGAGCTTAGGCGGCGGACCGCCTATAAGAAGGCCGGTGACAAGAAAGATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

35.14

Weight (kDa)

5.43

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 865
AccII CGCG 1 cut(s) 248
AcsI RAATTY 2 cut(s) 128, 169
AcuI CTGAAG 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 520
AfaI GTAC 2 cut(s) 221, 802
AfiI CCNNNNNNNGG 1 cut(s) 907
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 2 cut(s) 37, 168
AjiI CACGTC 1 cut(s) 762
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 335, 919
AluI AGCT 2 cut(s) 335, 919
Alw26I GTCTC 4 cut(s) 371, 401, 641, 686
AlwNI CAGNNNCTG 1 cut(s) 108
AoxI GGCC 3 cut(s) 552, 725, 945
ApaI GGGCCC 1 cut(s) 729
ApeKI GCWGC 2 cut(s) 641, 875
ApoI RAATTY 2 cut(s) 128, 169
AspLEI GCGC 2 cut(s) 601, 674
AspS9I GGNCC 5 cut(s) 725, 726, 888, 898, 930
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 167, 838, 853, 962
AvaII GGWCC 3 cut(s) 888, 898, 930
BaeGI GKGCMC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 729
BbsI GAAGAC 3 cut(s) 350, 470, 533
BbvI GCAGC 2 cut(s) 628, 862
BccI CCATC 1 cut(s) 838
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 652
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 4 cut(s) 371, 401, 641, 686
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 675
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 5 cut(s) 150, 357, 642, 876, 926
BlsI GCNGC 5 cut(s) 151, 358, 643, 877, 927
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 2 cut(s) 103, 179
Bme18I GGWCC 3 cut(s) 888, 898, 930
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 5 cut(s) 725, 726, 888, 898, 930
BmiI GGNNCC 2 cut(s) 726, 727
BmrFI CCNGG 2 cut(s) 103, 179
BmsI GCATC 2 cut(s) 442, 838
BpiI GAAGAC 3 cut(s) 350, 470, 533
BpmI CTGGAG 2 cut(s) 85, 220
Bpu10I CCTNAGC 5 cut(s) 336, 456, 501, 543, 920
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 179
BsaI GGTCTC 2 cut(s) 371, 641
BsaJI CCNNGG 6 cut(s) 102, 135, 258, 366, 423, 555
BsaWI WCCGGW 1 cut(s) 830
BsaXI ACNNNNNCTCC 4 cut(s) 746, 776, 825, 855
Bsc4I CCNNNNNNNGG 1 cut(s) 907
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 6 cut(s) 102, 135, 258, 366, 423, 555
BseGI GGATG 2 cut(s) 853, 859
BseLI CCNNNNNNNGG 1 cut(s) 907
BseMII CTCAG 2 cut(s) 94, 570
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 4 cut(s) 311, 386, 389, 749
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 2 cut(s) 628, 862
BseYI CCCAGC 1 cut(s) 878
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 3 cut(s) 554, 727, 947
BsiSI CCGG 3 cut(s) 178, 831, 948
BslFI GGGAC 4 cut(s) 218, 523, 643, 711
BslI CCNNNNNNNGG 1 cut(s) 907
BsmAI GTCTC 4 cut(s) 371, 401, 641, 686
BsmBI CGTCTC 1 cut(s) 686
BsmFI GGGAC 4 cut(s) 218, 523, 643, 711
BsnI GGCC 3 cut(s) 554, 727, 947
Bso31I GGTCTC 2 cut(s) 371, 641
Bsp120I GGGCCC 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 1 cut(s) 784
Bsp19I CCATGG 2 cut(s) 258, 366
BspANI GGCC 3 cut(s) 554, 727, 947
BspCNI CTCAG 2 cut(s) 93, 571
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 2 cut(s) 726, 727
BspTNI GGTCTC 2 cut(s) 371, 641
BsrBI CCGCTC 1 cut(s) 865
BsrFI RCCGGY 1 cut(s) 947
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 947
BssECI CCNNGG 6 cut(s) 102, 135, 258, 366, 423, 555
BssMI GATC 1 cut(s) 784
BssT1I CCWWGG 4 cut(s) 258, 366, 423, 555
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 6 cut(s) 412, 487, 565, 607, 652, 664
BstC8I GCNNGC 4 cut(s) 7, 242, 246, 873
BstDEI CTNAG 8 cut(s) 80, 336, 456, 501, 543, 579, 687, 920
BstDSI CCRYGG 2 cut(s) 258, 366
BstEII GGTNACC 1 cut(s) 826
BstF5I GGATG 2 cut(s) 853, 859
BstFNI CGCG 1 cut(s) 248
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 2 cut(s) 601, 674
BstKTI GATC 1 cut(s) 787
BstMAI GTCTC 4 cut(s) 371, 401, 641, 686
BstMBI GATC 1 cut(s) 784
BstMWI GCNNNNNNNGC 7 cut(s) 332, 452, 497, 530, 539, 680, 925
BstNI CCWGG 1 cut(s) 103
BstPI GGTNACC 1 cut(s) 826
BstSCI CCNGG 2 cut(s) 101, 177
BstSLI GKGCMC 1 cut(s) 729
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 628, 862
BstV2I GAAGAC 3 cut(s) 350, 470, 533
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 3 cut(s) 554, 727, 947
BtgI CCRYGG 2 cut(s) 258, 366
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 2 cut(s) 853, 859
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 3 cut(s) 417, 669, 750
Cac8I GCNNGC 4 cut(s) 7, 242, 246, 873
CaiI CAGNNNCTG 1 cut(s) 108
CfoI GCGC 2 cut(s) 601, 674
Cfr10I RCCGGY 1 cut(s) 947
Cfr13I GGNCC 5 cut(s) 725, 726, 888, 898, 930
CpoI CGGWCCG 1 cut(s) 930
Csp6I GTAC 2 cut(s) 220, 801
CspI CGGWCCG 1 cut(s) 930
CviAII CATG 3 cut(s) 259, 367, 475
CviQI GTAC 2 cut(s) 220, 801
DdeI CTNAG 8 cut(s) 80, 336, 456, 501, 543, 579, 687, 920
DpnI GATC 1 cut(s) 786
DpnII GATC 1 cut(s) 784
DraIII CACNNNGTG 1 cut(s) 520
EciI GGCGGA 8 cut(s) 109, 167, 374, 506, 602, 626, 923, 943
Eco130I CCWWGG 4 cut(s) 258, 366, 423, 555
Eco24I GRGCYC 1 cut(s) 729
Eco31I GGTCTC 2 cut(s) 371, 641
Eco47I GGWCC 3 cut(s) 888, 898, 930
Eco57I CTGAAG 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 826
EcoO109I RGGNCCY 2 cut(s) 725, 898
EcoO65I GGTNACC 1 cut(s) 826
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 4 cut(s) 258, 366, 423, 555
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 4 cut(s) 258, 366, 423, 555
Esp3I CGTCTC 1 cut(s) 686
FaeI CATG 3 cut(s) 262, 370, 478
FaqI GGGAC 4 cut(s) 218, 523, 643, 711
FatI CATG 3 cut(s) 258, 366, 474
FauI CCCGC 3 cut(s) 279, 526, 864
Fnu4HI GCNGC 5 cut(s) 150, 357, 642, 876, 926
FokI GGATG 2 cut(s) 860, 866
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 5 cut(s) 150, 357, 642, 876, 926
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 600, 673
GluI GCNGC 5 cut(s) 150, 357, 642, 876, 926
GsaI CCCAGC 1 cut(s) 882
GsuI CTGGAG 2 cut(s) 85, 220
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 3 cut(s) 554, 727, 947
HapII CCGG 3 cut(s) 178, 831, 948
HhaI GCGC 2 cut(s) 601, 674
Hin1II CATG 3 cut(s) 262, 370, 478
Hin6I GCGC 2 cut(s) 599, 672
HinP1I GCGC 2 cut(s) 599, 672
HinfI GANTC 4 cut(s) 25, 164, 511, 911
HpaII CCGG 3 cut(s) 178, 831, 948
HphI GGTGA 4 cut(s) 167, 838, 853, 962
Hpy188I TCNGA 7 cut(s) 83, 136, 406, 766, 811, 892, 916
HpyCH4III ACNGT 6 cut(s) 412, 487, 565, 607, 652, 664
HpyCH4IV ACGT 2 cut(s) 392, 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 452, 497, 530, 539, 680, 925
HpyF3I CTNAG 8 cut(s) 80, 336, 456, 501, 543, 579, 687, 920
HpySE526I ACGT 2 cut(s) 392, 761
Hsp92II CATG 3 cut(s) 262, 370, 478
HspAI GCGC 2 cut(s) 599, 672
Kzo9I GATC 1 cut(s) 784
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 2 cut(s) 628, 862
LweI GCATC 2 cut(s) 442, 838
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 392, 761
MaeIII GTNAC 2 cut(s) 826, 950
MalI GATC 1 cut(s) 786
MbiI CCGCTC 1 cut(s) 865
MboI GATC 1 cut(s) 784
MboII GAAGA 7 cut(s) 25, 34, 275, 355, 475, 538, 827
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 2 cut(s) 128, 169
MlyI GAGTC 2 cut(s) 505, 920
MmeI TCCRAC 1 cut(s) 894
MspI CCGG 3 cut(s) 178, 831, 948
MspR9I CCNGG 2 cut(s) 103, 179
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 7 cut(s) 332, 452, 497, 530, 539, 680, 925
NciI CCSGG 1 cut(s) 179
NcoI CCATGG 2 cut(s) 258, 366
NdeII GATC 1 cut(s) 784
NlaIII CATG 3 cut(s) 262, 370, 478
NlaIV GGNNCC 2 cut(s) 726, 727
NmuCI GTSAC 2 cut(s) 826, 950
PfeI GAWTC 2 cut(s) 25, 164
PkrI GCNGC 5 cut(s) 151, 358, 643, 877, 927
PleI GAGTC 2 cut(s) 505, 919
PpsI GAGTC 2 cut(s) 505, 919
PpuMI RGGWCCY 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 101
PspEI GGTNACC 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 878
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 726, 727
PspOMI GGGCCC 1 cut(s) 725
PspPI GGNCC 5 cut(s) 725, 726, 888, 898, 930
PspPPI RGGWCCY 1 cut(s) 898
PstNI CAGNNNCTG 1 cut(s) 108
RsaI GTAC 2 cut(s) 221, 802
RsaNI GTAC 2 cut(s) 220, 801
Rsr2I CGGWCCG 1 cut(s) 930
RsrII CGGWCCG 1 cut(s) 930
SatI GCNGC 5 cut(s) 150, 357, 642, 876, 926
Sau3AI GATC 1 cut(s) 784
Sau96I GGNCC 5 cut(s) 725, 726, 888, 898, 930
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 2 cut(s) 505, 920
ScrFI CCNGG 2 cut(s) 103, 179
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 2 cut(s) 442, 838
SinI GGWCC 3 cut(s) 888, 898, 930
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 2 cut(s) 128, 169
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 101, 177
StyI CCWWGG 4 cut(s) 258, 366, 423, 555
TaaI ACNGT 6 cut(s) 412, 487, 565, 607, 652, 664
TaiI ACGT 2 cut(s) 395, 764
TaqI TCGA 2 cut(s) 142, 792
TasI AATT 2 cut(s) 128, 169
TatI WGTACW 1 cut(s) 800
TauI GCSGC 3 cut(s) 152, 359, 928
TfiI GAWTC 2 cut(s) 25, 164
TscAI CASTG 3 cut(s) 417, 669, 750
TseFI GTSAC 2 cut(s) 826, 950
TseI GCWGC 2 cut(s) 641, 875
Tsp45I GTSAC 2 cut(s) 826, 950
TspDTI ATGAA 3 cut(s) 103, 317, 828
TspRI CASTG 3 cut(s) 417, 669, 750
VpaK11BI GGWCC 3 cut(s) 888, 898, 930
XapI RAATTY 2 cut(s) 128, 169
XspI CTAG 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.