RchiOBHm_Chr5g0008841

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001595
Physical Location & Seq
Forward (+)
5778598 .. 5779864
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28977

Sequence Viewer

Length: 969 bp
ATGGCGAGCCTTTCATTAGCGAAGAATCTCATCTTCAATCTCTCAAAGTCGTTTCCTCAATCCCAAGTTTCACTCTCTCTCAGACCCTCTCTCAAAATCTCTAGGGTTTGCTTCACCTCCGCCTCCAAATTCTCCGAGGGTCGAAATGCGGCGGAGGAGAATAGGGATTCAAATTCTCACCGGCCGTATGCCGATAAGGACTGGAGGGACAAGGAAAGAGGGTACGGCTCTGCTGAAGTGAGCAAGCACGCGAAAGAAACCATGGAAGGACTAGAAAAAACCAAGCGGGAATCAGAGGAGATGAAAGAGAGAGCGAAGGATTACGCCTACGAAGCTAAGGAGAAGACAAAGAGTGCGGCGGAAACCATGGAGGAGAAGGCCAAAGAGGGAACGTATAAGGCTTCAGAGACAGCGGAGAGTGCCAAGGAGAAGGCAAAGGACTACGCTTATGATGCTAAGGAGAAGACGAAAGACATGGCTGGAACTGTCGAGGAGAAGGCTAAGGAGGGGACTCACAAGGTGGCGAAGACTGCGGGGAGTGCTAAGGAGAAGGCCAAGGACACGGTTTATGGGGCGACTGAGAAGGCGGAGGGTGTGGCGGAGACGGTGACGGATAAGGTGAAGGGAGGAACACATAAGGCTGCGGAGACCGTGAAGGATACAGTGAAGGGCGCTTGGGAGGCGACTAAGGAGACGGGGCAGGCAATCAAGGAGGCAGTTGTGGGTCCCGATGCGGAGGTGGCAGTGGTCGTGGAGGACACGTCAGATGATGATGTGGCGGTTGATCTTGTCGAAGAGAGCACTTCGTCCGATGAAGATGTGGCGGTCACCGGAGGGAAGGTGATGGATGCTGATGTCATTGAGCGGAGGCGTGCTGCTGGGTATAGGTCCGATGAGGACCTGTCGGCGGAGGCAGACCTTAGGCGGCGGACCGCCTATAAGAAGGCCGATGACAAGAAAGATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

35.18

Weight (kDa)

5.44

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 865
AccII CGCG 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 2 cut(s) 128, 172
AcuI CTGAAG 2 cut(s) 255, 387
AdeI CACNNNGTG 1 cut(s) 520
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 907
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 2 cut(s) 37, 171
AjiI CACGTC 1 cut(s) 762
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 4 cut(s) 401, 596, 641, 686
AoxI GGCC 4 cut(s) 182, 378, 552, 945
ApeKI GCWGC 2 cut(s) 641, 875
ApoI RAATTY 2 cut(s) 128, 172
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 4 cut(s) 725, 888, 898, 930
AsuHPI GGTGA 6 cut(s) 106, 170, 619, 631, 820, 853
AvaII GGWCC 4 cut(s) 725, 888, 898, 930
AxyI CCTNAGG 1 cut(s) 920
BbsI GAAGAC 3 cut(s) 350, 470, 533
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 628, 862
BccI CCATC 1 cut(s) 838
BceAI ACGGC 2 cut(s) 169, 241
BciVI GTATCC 1 cut(s) 652
BcoDI GTCTC 4 cut(s) 401, 596, 641, 686
BfaI CTAG 2 cut(s) 102, 272
BfoI RGCGCY 1 cut(s) 675
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 5 cut(s) 150, 357, 642, 876, 926
BlsI GCNGC 5 cut(s) 151, 358, 643, 877, 927
Bme18I GGWCC 4 cut(s) 725, 888, 898, 930
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 4 cut(s) 725, 888, 898, 930
BmiI GGNNCC 2 cut(s) 726, 727
BmsI GCATC 3 cut(s) 442, 721, 838
BpiI GAAGAC 3 cut(s) 350, 470, 533
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 4 cut(s) 336, 456, 501, 543
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 5 cut(s) 135, 261, 366, 423, 555
BsaWI WCCGGW 1 cut(s) 830
BsaXI ACNNNNNCTCC 4 cut(s) 746, 776, 825, 855
Bsc4I CCNNNNNNNGG 1 cut(s) 907
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 920
BseDI CCNNGG 5 cut(s) 135, 261, 366, 423, 555
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 1 cut(s) 907
BseMII CTCAG 2 cut(s) 94, 570
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 4 cut(s) 170, 311, 386, 506
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 628, 862
BseYI CCCAGC 1 cut(s) 878
Bsh1236I CGCG 1 cut(s) 251
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 4 cut(s) 184, 380, 554, 947
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 2 cut(s) 181, 831
BslFI GGGAC 3 cut(s) 221, 523, 711
BslI CCNNNNNNNGG 1 cut(s) 907
BsmAI GTCTC 4 cut(s) 401, 596, 641, 686
BsmBI CGTCTC 2 cut(s) 596, 686
BsmFI GGGAC 3 cut(s) 221, 523, 711
BsnI GGCC 4 cut(s) 184, 380, 554, 947
Bso31I GGTCTC 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 803
Bsp143I GATC 1 cut(s) 784
Bsp19I CCATGG 2 cut(s) 261, 366
BspANI GGCC 4 cut(s) 184, 380, 554, 947
BspCNI CTCAG 2 cut(s) 93, 571
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 726, 727
BspTNI GGTCTC 1 cut(s) 641
BsrBI CCGCTC 1 cut(s) 865
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 5 cut(s) 135, 261, 366, 423, 555
BssMI GATC 1 cut(s) 784
BssT1I CCWWGG 4 cut(s) 261, 366, 423, 555
Bst4CI ACNGT 5 cut(s) 487, 565, 607, 652, 664
Bst6I CTCTTC 1 cut(s) 789
BstC8I GCNNGC 5 cut(s) 7, 245, 249, 702, 873
BstDEI CTNAG 8 cut(s) 80, 336, 456, 501, 543, 579, 687, 920
BstDSI CCRYGG 2 cut(s) 261, 366
BstEII GGTNACC 1 cut(s) 826
BstF5I GGATG 1 cut(s) 853
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 1 cut(s) 787
BstMAI GTCTC 4 cut(s) 401, 596, 641, 686
BstMBI GATC 1 cut(s) 784
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 7 cut(s) 332, 419, 452, 530, 539, 680, 740
BstPI GGTNACC 1 cut(s) 826
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 628, 862
BstV2I GAAGAC 3 cut(s) 350, 470, 533
BstZI CGGCCG 1 cut(s) 182
Bsu36I CCTNAGG 1 cut(s) 920
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 4 cut(s) 184, 380, 554, 947
BtgI CCRYGG 2 cut(s) 261, 366
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 1 cut(s) 853
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 669, 750
Cac8I GCNNGC 5 cut(s) 7, 245, 249, 702, 873
CfoI GCGC 1 cut(s) 674
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 4 cut(s) 725, 888, 898, 930
CpoI CGGWCCG 1 cut(s) 930
Csp6I GTAC 1 cut(s) 223
CspI CGGWCCG 1 cut(s) 930
CviAII CATG 3 cut(s) 262, 367, 475
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 8 cut(s) 80, 336, 456, 501, 543, 579, 687, 920
DpnI GATC 1 cut(s) 786
DpnII GATC 1 cut(s) 784
DraIII CACNNNGTG 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
EciI GGCGGA 7 cut(s) 109, 167, 374, 602, 614, 923, 943
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 4 cut(s) 261, 366, 423, 555
Eco31I GGTCTC 1 cut(s) 641
Eco47I GGWCC 4 cut(s) 725, 888, 898, 930
Eco52I CGGCCG 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 255, 387
Eco81I CCTNAGG 1 cut(s) 920
Eco91I GGTNACC 1 cut(s) 826
EcoO109I RGGNCCY 2 cut(s) 725, 898
EcoO65I GGTNACC 1 cut(s) 826
EcoT14I CCWWGG 4 cut(s) 261, 366, 423, 555
ErhI CCWWGG 4 cut(s) 261, 366, 423, 555
Esp3I CGTCTC 2 cut(s) 596, 686
FaeI CATG 3 cut(s) 265, 370, 478
FaqI GGGAC 3 cut(s) 221, 523, 711
FatI CATG 3 cut(s) 261, 366, 474
FauI CCCGC 2 cut(s) 279, 526
Fnu4HI GCNGC 5 cut(s) 150, 357, 642, 876, 926
FokI GGATG 1 cut(s) 860
Fsp4HI GCNGC 5 cut(s) 150, 357, 642, 876, 926
FspBI CTAG 2 cut(s) 102, 272
GlaI GCGC 1 cut(s) 673
GluI GCNGC 5 cut(s) 150, 357, 642, 876, 926
GsaI CCCAGC 1 cut(s) 882
GsuI CTGGAG 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 4 cut(s) 184, 380, 554, 947
HapII CCGG 2 cut(s) 181, 831
HhaI GCGC 1 cut(s) 674
Hin1II CATG 3 cut(s) 265, 370, 478
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HinfI GANTC 4 cut(s) 25, 167, 290, 511
HpaII CCGG 2 cut(s) 181, 831
HphI GGTGA 6 cut(s) 106, 170, 619, 631, 820, 853
Hpy188I TCNGA 7 cut(s) 83, 136, 295, 406, 766, 811, 892
Hpy188III TCNNGA 1 cut(s) 728
HpyCH4III ACNGT 5 cut(s) 487, 565, 607, 652, 664
HpyCH4IV ACGT 2 cut(s) 392, 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 419, 452, 530, 539, 680, 740
HpyF3I CTNAG 8 cut(s) 80, 336, 456, 501, 543, 579, 687, 920
HpySE526I ACGT 2 cut(s) 392, 761
Hsp92II CATG 3 cut(s) 265, 370, 478
HspAI GCGC 1 cut(s) 672
KflI GGGWCCC 1 cut(s) 725
Kzo9I GATC 1 cut(s) 784
LpnPI CCDG 7 cut(s) 187, 194, 465, 686, 844, 864, 914
Lsp1109I GCAGC 2 cut(s) 628, 862
LweI GCATC 3 cut(s) 442, 721, 838
MaeI CTAG 2 cut(s) 102, 272
MaeII ACGT 2 cut(s) 392, 761
MaeIII GTNAC 2 cut(s) 607, 826
MalI GATC 1 cut(s) 786
MbiI CCGCTC 1 cut(s) 865
MboI GATC 1 cut(s) 784
MboII GAAGA 7 cut(s) 25, 34, 355, 475, 538, 806, 827
MhlI GDGCHC 1 cut(s) 803
MluCI AATT 2 cut(s) 128, 172
MlyI GAGTC 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 2 cut(s) 181, 831
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 7 cut(s) 332, 419, 452, 530, 539, 680, 740
NcoI CCATGG 2 cut(s) 261, 366
NdeII GATC 1 cut(s) 784
NlaIII CATG 3 cut(s) 265, 370, 478
NlaIV GGNNCC 2 cut(s) 726, 727
NmuCI GTSAC 2 cut(s) 607, 826
PfeI GAWTC 3 cut(s) 25, 167, 290
PkrI GCNGC 5 cut(s) 151, 358, 643, 877, 927
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PpuMI RGGWCCY 2 cut(s) 725, 898
Psp5II RGGWCCY 2 cut(s) 725, 898
PspEI GGTNACC 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 878
PspN4I GGNNCC 2 cut(s) 726, 727
PspPI GGNCC 4 cut(s) 725, 888, 898, 930
PspPPI RGGWCCY 2 cut(s) 725, 898
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
Rsr2I CGGWCCG 1 cut(s) 930
RsrII CGGWCCG 1 cut(s) 930
SatI GCNGC 5 cut(s) 150, 357, 642, 876, 926
Sau3AI GATC 1 cut(s) 784
Sau96I GGNCC 4 cut(s) 725, 888, 898, 930
SchI GAGTC 1 cut(s) 505
SduI GDGCHC 1 cut(s) 803
SfaNI GCATC 3 cut(s) 442, 721, 838
SinI GGWCC 4 cut(s) 725, 888, 898, 930
Sse9I AATT 2 cut(s) 128, 172
SspMI CTAG 2 cut(s) 102, 272
StyI CCWWGG 4 cut(s) 261, 366, 423, 555
TaaI ACNGT 5 cut(s) 487, 565, 607, 652, 664
TaiI ACGT 2 cut(s) 395, 764
TaqI TCGA 3 cut(s) 142, 489, 792
TasI AATT 2 cut(s) 128, 172
TauI GCSGC 3 cut(s) 152, 359, 928
TfiI GAWTC 3 cut(s) 25, 167, 290
TscAI CASTG 2 cut(s) 669, 750
TseFI GTSAC 2 cut(s) 607, 826
TseI GCWGC 2 cut(s) 641, 875
Tsp45I GTSAC 2 cut(s) 607, 826
TspDTI ATGAA 2 cut(s) 317, 828
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 2 cut(s) 669, 750
VpaK11BI GGWCC 4 cut(s) 725, 888, 898, 930
XapI RAATTY 2 cut(s) 128, 172
XspI CTAG 2 cut(s) 102, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.