Prupe.4G049600_v2.0.a1

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001595
Physical Location & Seq
Forward (+)
2375103 .. 2376128
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G049600.1

Sequence Viewer

Length: 711 bp
ATGGCAGTGATTTCCCTAGCCAATAATATATCAAGGCCTTTTCCTCAACCCCCTTCCTCAATATCTCACGGATATTCCTCTCGCAAAGTCTCCCGGGTCTGCTTCACCTCTGCCTTCAAATTCTCCGGGGGTCGAAATGCGTCGGAAGAGAACAGGGGATATTATTCAAGGGTTGACAGCAGGGGATATGCCGACAAGAACTGGAGGAAAAAGGAACGAGACGTGAGTAGGAAGGCAAAAGAAACCGTGGAAGATGGCCTGGAAAAAAGCAAGCAAAAAGCAGAGGAAATCAAAGACGCAACCAAGGAGTATGCACAGGGCGTAGCGCAGACGGTGGCAGATAATACAAAACAGGGAACAAACACAGCAGCCGAGACAGCAGAGAGCGCAAAGGAGAGAGCCAAAGAGTACGCGTACGAGACAAACAAGAAGACCAAAGATGTGGCGGGGACTGTAGTGGATCAGGTCAAAGAGGGGACTAACAAGGCCGCAGAGACGGCGGAGAGTGCGAATGAGAAGGCGAAAGAGGGCGCGTTGGAGGTGAAGGAGAGAACAGAGGATGCGGGGCAAACGGTGGTGGACAAGGTGAAGGAGGGGACGAGCAAGGCGGCGGAGACGGTGGAAACGGTGGTGGAGAATGTGAAGGAGGGGACAAGCAAGGCGGCGAAGGCGGTGAATGATACGATAAATCCTGATGGGAAGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

237

Amino Acids

25.7

Weight (kDa)

8.85

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 413, 533
AciI CCGC 8 cut(s) 446, 489, 500, 563, 608, 611, 662, 671
AclWI GGATC 1 cut(s) 468
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 410, 416
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 118, 168
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 258
Alw26I GTCTC 6 cut(s) 94, 213, 368, 413, 488, 608
AlwI GGATC 1 cut(s) 468
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 3 cut(s) 35, 256, 486
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 3 cut(s) 328, 389, 533
AsuC2I CCSGG 3 cut(s) 94, 95, 127
AsuHPI GGTGA 4 cut(s) 97, 553, 598, 685
AvaI CYCGRG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 380
BccI CCATC 2 cut(s) 248, 689
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 3 cut(s) 94, 95, 127
BcoDI GTCTC 6 cut(s) 94, 213, 368, 413, 488, 608
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 4 cut(s) 369, 489, 609, 663
BlsI GCNGC 4 cut(s) 370, 490, 610, 664
Bme1390I CCNGG 4 cut(s) 94, 95, 127, 260
BmeT110I CYCGRG 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 223
BmrFI CCNGG 4 cut(s) 94, 95, 127, 260
BmsI GCATC 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 223
BpuMI CCSGG 3 cut(s) 94, 95, 127
BsaJI CCNNGG 4 cut(s) 93, 126, 246, 303
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 4 cut(s) 93, 126, 246, 303
BseGI GGATG 1 cut(s) 565
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 413, 533
BshFI GGCC 3 cut(s) 37, 258, 488
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 94, 126
BsiWI CGTACG 1 cut(s) 414
BslFI GGGAC 4 cut(s) 463, 490, 610, 664
BsmAI GTCTC 6 cut(s) 94, 213, 368, 413, 488, 608
BsmBI CGTCTC 3 cut(s) 213, 488, 608
BsmFI GGGAC 4 cut(s) 463, 490, 610, 664
BsnI GGCC 3 cut(s) 37, 258, 488
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 8 cut(s) 446, 489, 500, 563, 608, 611, 662, 671
BspANI GGCC 3 cut(s) 37, 258, 488
BspFNI CGCG 2 cut(s) 413, 533
BspPI GGATC 1 cut(s) 468
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 93, 126, 246, 303
BssMI GATC 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 6 cut(s) 247, 334, 454, 574, 619, 628
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 2 cut(s) 413, 533
BstHHI GCGC 3 cut(s) 328, 389, 533
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 6 cut(s) 94, 213, 368, 413, 488, 608
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 5 cut(s) 377, 386, 497, 506, 668
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 92, 93, 125, 258
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 2 cut(s) 413, 533
BstV1I GCAGC 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 437
BstXI CCANNNNNNTGG 1 cut(s) 442
BsuRI GGCC 3 cut(s) 37, 258, 488
BtgI CCRYGG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 565
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 3 cut(s) 328, 389, 533
Cfr9I CCCGGG 1 cut(s) 93
CseI GACGC 2 cut(s) 129, 305
Csp6I GTAC 2 cut(s) 409, 415
CviJI RGCY 6 cut(s) 20, 37, 258, 371, 401, 488
CviKI_1 RGCY 6 cut(s) 20, 37, 258, 371, 401, 488
CviQI GTAC 2 cut(s) 409, 415
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 2 cut(s) 515, 626
Eco130I CCWWGG 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 3 cut(s) 213, 488, 608
FaiI YATR 3 cut(s) 29, 189, 312
FaqI GGGAC 4 cut(s) 463, 490, 610, 664
FauI CCCGC 2 cut(s) 439, 556
Fnu4HI GCNGC 4 cut(s) 369, 489, 609, 663
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 4 cut(s) 369, 489, 609, 663
FspBI CTAG 1 cut(s) 17
GlaI GCGC 3 cut(s) 327, 388, 532
GluI GCNGC 4 cut(s) 369, 489, 609, 663
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 3 cut(s) 37, 258, 488
HapII CCGG 2 cut(s) 94, 126
HgaI GACGC 2 cut(s) 129, 305
HhaI GCGC 3 cut(s) 328, 389, 533
Hin6I GCGC 3 cut(s) 326, 387, 531
HinP1I GCGC 3 cut(s) 326, 387, 531
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HpaII CCGG 2 cut(s) 94, 126
HphI GGTGA 4 cut(s) 97, 553, 598, 685
Hpy166II GTNNAC 2 cut(s) 175, 580
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 692
Hpy8I GTNNAC 2 cut(s) 175, 580
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 8 cut(s) 63, 124, 226, 511, 538, 583, 637, 661
HpyCH4III ACNGT 6 cut(s) 247, 334, 454, 574, 619, 628
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 377, 386, 497, 506, 668
HpySE526I ACGT 1 cut(s) 222
HspAI GCGC 3 cut(s) 326, 387, 531
Kzo9I GATC 1 cut(s) 460
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 1 cut(s) 550
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 222
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 3 cut(s) 158, 263, 442
MluCI AATT 1 cut(s) 119
MluI ACGCGT 1 cut(s) 411
MmeI TCCRAC 2 cut(s) 123, 516
MspI CCGG 2 cut(s) 94, 126
MspR9I CCNGG 4 cut(s) 94, 95, 127, 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 413, 533
MwoI GCNNNNNNNGC 5 cut(s) 377, 386, 497, 506, 668
NciI CCSGG 3 cut(s) 94, 95, 127
NdeII GATC 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 397
PceI AGGCCT 1 cut(s) 37
Pfl23II CGTACG 1 cut(s) 414
PkrI GCNGC 4 cut(s) 370, 490, 610, 664
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspLI CGTACG 1 cut(s) 414
RsaI GTAC 2 cut(s) 410, 416
RsaNI GTAC 2 cut(s) 409, 415
SatI GCNGC 4 cut(s) 369, 489, 609, 663
Sau3AI GATC 1 cut(s) 460
ScrFI CCNGG 4 cut(s) 94, 95, 127, 260
SetI ASST 5 cut(s) 110, 225, 468, 543, 588
SfaNI GCATC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 453
SmaI CCCGGG 1 cut(s) 95
Sse9I AATT 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 8 cut(s) 446, 489, 500, 563, 608, 611, 662, 671
SspI AATATT 1 cut(s) 707
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 4 cut(s) 92, 93, 125, 258
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 6 cut(s) 247, 334, 454, 574, 619, 628
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 119
TauI GCSGC 3 cut(s) 491, 611, 665
TscAI CASTG 1 cut(s) 12
TseI GCWGC 1 cut(s) 368
TspGWI ACGGA 1 cut(s) 84
TspMI CCCGGG 1 cut(s) 93
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 119
XmaI CCCGGG 1 cut(s) 93
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.