Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Reverse (-)

89077207 .. 89077811

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCAGCCAGCAATGTCATCTTCAACATCTCGAGGTCGCCGTTAACTCAATCCCCGGCTTCACACTCTCTCAGTCCCTCTCTCAAAACCTCCAGGGTTTGCTTCACCTCCGCCTCCAAATTCTCCAAGTTCCCGCCGGGGTATGACGGAAAGGACTGGAGTACCAAAGCAAAGCCAACCAGGGAAGAAGATGTCGAAGATGACAAGCCACTCTTAGAGAAAATTAAGGGGGCAGCGACGGAGTACGCGGAAGAAACGATGGAGAACGTAAAAGGCGCATCGGAGACTATATCAGAGACGACCAAGGAGTATGCAGATGATGCAAAGGAGAAGACAAACGAGGCAGCGGAGACTATAACGGCCAAGGCGGAGGAGGGGACTAACAAGGTGGCGGAGCTGGAGACGACGGAGAGTGACAGTGAGAATGTCAAGGAGAGTGAAAGTGAGAAGGTCAAGGAGACGGCAGAGAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

158

Amino Acids

17.23

Weight (kDa)

4.67

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	6 cut(s)	111, 134, 248, 347, 368, 392
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	2 cut(s)	163, 245
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	92, 179
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	5 cut(s)	278, 290, 344, 395, 452
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	5, 233, 344
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	278
AsuC2I	CCSGG	2 cut(s)	56, 138
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	31
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	17, 245, 356
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	25, 375
BciT130I	CCWGG	2 cut(s)	94, 181
BcnI	CCSGG	2 cut(s)	56, 138
BcoDI	GTCTC	5 cut(s)	278, 290, 344, 395, 452
BisI	GCNGC	3 cut(s)	6, 234, 345
BlsI	GCNGC	3 cut(s)	7, 235, 346
Bme1390I	CCNGG	4 cut(s)	56, 94, 138, 181
BmeT110I	CYCGRG	1 cut(s)	31
BmrFI	CCNGG	4 cut(s)	56, 94, 138, 181
BmsI	GCATC	2 cut(s)	287, 310
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	3 cut(s)	76, 178, 419
BpuMI	CCSGG	2 cut(s)	56, 138
BsaJI	CCNNGG	6 cut(s)	54, 93, 137, 180, 303, 363
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	94, 181
BseDI	CCNNGG	6 cut(s)	54, 93, 137, 180, 303, 363
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	17, 245, 356
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	56, 137
BslFI	GGGAC	2 cut(s)	60, 391
BsmAI	GTCTC	5 cut(s)	278, 290, 344, 395, 452
BsmBI	CGTCTC	3 cut(s)	290, 395, 452
BsmFI	GGGAC	2 cut(s)	60, 391
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	31
BspACI	CCGC	6 cut(s)	111, 134, 248, 347, 368, 392
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	6 cut(s)	54, 93, 137, 180, 303, 363
BssT1I	CCWWGG	2 cut(s)	303, 363
Bst2UI	CCWGG	2 cut(s)	94, 181
Bst4CI	ACNGT	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	71, 214
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	278
BstMAI	GTCTC	5 cut(s)	278, 290, 344, 395, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	94, 181
BstSCI	CCNGG	4 cut(s)	54, 92, 136, 179
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	17, 245, 356
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	162, 244
CviJI	RGCY	6 cut(s)	8, 59, 175, 208, 362, 397
CviKI_1	RGCY	6 cut(s)	8, 59, 175, 208, 362, 397
CviQI	GTAC	2 cut(s)	162, 244
DdeI	CTNAG	2 cut(s)	71, 214
EaeI	YGGCCR	1 cut(s)	360
EciI	GGCGGA	3 cut(s)	100, 383, 407
Eco130I	CCWWGG	2 cut(s)	303, 363
Eco88I	CYCGRG	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	92, 179
EcoT14I	CCWWGG	2 cut(s)	303, 363
ErhI	CCWWGG	2 cut(s)	303, 363
Esp3I	CGTCTC	3 cut(s)	290, 395, 452
FaiI	YATR	6 cut(s)	144, 290, 312, 356, 473, 475
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	2 cut(s)	60, 391
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	6, 234, 345
Fsp4HI	GCNGC	3 cut(s)	6, 234, 345
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	3 cut(s)	6, 234, 345
GsuI	CTGGAG	3 cut(s)	76, 178, 419
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	2 cut(s)	56, 137
HhaI	GCGC	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	56, 137
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	283, 295
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	2 cut(s)	241, 409
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	314, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	71, 214
HpySE526I	ACGT	1 cut(s)	267
HspAI	GCGC	1 cut(s)	276
KspAI	GTTAAC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	9 cut(s)	22, 69, 79, 106, 142, 150, 166, 193, 383
Lsp1109I	GCAGC	3 cut(s)	17, 245, 356
LweI	GCATC	2 cut(s)	287, 310
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	413
MboII	GAAGA	6 cut(s)	13, 197, 200, 209, 263, 343
MluCI	AATT	2 cut(s)	119, 222
MnlI	CCTC	8 cut(s)	27, 88, 100, 118, 124, 334, 364, 367
MseI	TTAA	2 cut(s)	44, 225
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	2 cut(s)	56, 137
MspR9I	CCNGG	4 cut(s)	56, 94, 138, 181
MvaI	CCWGG	2 cut(s)	94, 181
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	320
NciI	CCSGG	2 cut(s)	56, 138
NmuCI	GTSAC	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	7, 235, 346
Psp6I	CCWGG	2 cut(s)	92, 179
PspGI	CCWGG	2 cut(s)	92, 179
RsaI	GTAC	2 cut(s)	163, 245
RsaNI	GTAC	2 cut(s)	162, 244
SaqAI	TTAA	2 cut(s)	44, 225
SatI	GCNGC	3 cut(s)	6, 234, 345
ScrFI	CCNGG	4 cut(s)	56, 94, 138, 181
SetI	ASST	7 cut(s)	38, 92, 110, 270, 390, 399, 453
SfaNI	GCATC	2 cut(s)	287, 310
Sfr274I	CTCGAG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	2 cut(s)	119, 222
SsiI	CCGC	6 cut(s)	111, 134, 248, 347, 368, 392
StyD4I	CCNGG	4 cut(s)	54, 92, 136, 179
StyI	CCWWGG	2 cut(s)	303, 363
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	32, 195
TasI	AATT	2 cut(s)	119, 222
Tru1I	TTAA	2 cut(s)	44, 225
Tru9I	TTAA	2 cut(s)	44, 225
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	3 cut(s)	5, 233, 344
Tsp45I	GTSAC	1 cut(s)	413
TspGWI	ACGGA	3 cut(s)	162, 254, 422
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.