Rorug04G0439700

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001595
Physical Location & Seq
Forward (+)
59667409 .. 59669111
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0439700.1

Sequence Viewer

Length: 516 bp
ATGAACCAGACGTTGCTAGCGAATCACAGTACATTGCTCGACTTACTTGAAATTCCGCAGCTTATGGATACATGTGTGAGGAATGGAAATTATGATGAAGCTCTTGACTTAGAGACGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCTACTTCTTCAGAAACTTCGCTCAAACATTCAGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCAGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGAGTACAGCAGTTGAAAATTTTCAGTTGGTCTTGGATTCACATCGTTGGGTCCCACTACCAGCAGTTGGTTTTCCAGCAAATAGTGTTAATGATGAAAGTCTGGATGATGTAACTCCGCCATCTTATCTTATGGAACATCCACCTCTTGCTGTTTTTGTTAATGGTAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.98

Weight (kDa)

4.79

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 1 - 81 7.7e-31 Dor1-like family
Dor1 PF04124 80 - 119 5.6e-09 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AciI CCGC 2 cut(s) 56, 458
AcsI RAATTY 2 cut(s) 51, 358
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 31, 346
AfiI CCNNNNNNNGG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 4 cut(s) 50, 135, 308, 356
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 4 cut(s) 61, 101, 130, 167
AluI AGCT 4 cut(s) 61, 101, 130, 167
Alw26I GTCTC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 58, 173
ApoI RAATTY 2 cut(s) 51, 358
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 16
AvaII GGWCC 1 cut(s) 391
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BbvI GCAGC 2 cut(s) 70, 160
BccI CCATC 2 cut(s) 304, 469
BciT130I CCWGG 1 cut(s) 284
BciVI GTATCC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 2 cut(s) 17, 275
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 2 cut(s) 59, 174
BlsI GCNGC 2 cut(s) 60, 175
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 392, 393
BmrFI CCNGG 1 cut(s) 284
BmtI GCTAGC 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 451, 478
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 70, 160
BslFI GGGAC 2 cut(s) 300, 377
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 300, 377
BspACI CCGC 2 cut(s) 56, 458
BspLI GGNNCC 2 cut(s) 392, 393
BspMAI CTGCAG 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 207, 303
BstC8I GCNNGC 2 cut(s) 18, 128
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 451, 478
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 70, 160
BsuI GTATCC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 451, 478
Cac8I GCNNGC 2 cut(s) 18, 128
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 30, 345
CviAII CATG 2 cut(s) 72, 139
CviJI RGCY 7 cut(s) 61, 101, 130, 167, 173, 259, 274
CviKI_1 RGCY 7 cut(s) 61, 101, 130, 167, 173, 259, 274
CviQI GTAC 2 cut(s) 30, 345
DdeI CTNAG 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 207, 303
EarI CTCTTC 2 cut(s) 207, 303
EciI GGCGGA 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 75, 142
FaiI YATR 8 cut(s) 65, 73, 93, 140, 161, 254, 341, 473
FaqI GGGAC 2 cut(s) 300, 377
FatI CATG 2 cut(s) 71, 138
Fnu4HI GCNGC 2 cut(s) 59, 174
FokI GGATG 2 cut(s) 458, 465
Fsp4HI GCNGC 2 cut(s) 59, 174
FspBI CTAG 2 cut(s) 17, 275
GluI GCNGC 2 cut(s) 59, 174
Hin1II CATG 2 cut(s) 75, 142
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 22, 377
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 104, 443
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 11, 116
HpyCH4V TGCA 3 cut(s) 126, 142, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 2 cut(s) 11, 116
Hsp92II CATG 2 cut(s) 75, 142
KflI GGGWCCC 1 cut(s) 391
LpnPI CCDG 8 cut(s) 20, 155, 169, 269, 296, 414, 428, 429
Lsp1109I GCAGC 2 cut(s) 70, 160
MaeI CTAG 2 cut(s) 17, 275
MaeII ACGT 2 cut(s) 11, 116
MaeIII GTNAC 1 cut(s) 451
MboII GAAGA 3 cut(s) 194, 209, 320
MluCI AATT 3 cut(s) 51, 88, 358
MnlI CCTC 3 cut(s) 72, 304, 495
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 429, 501
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 173
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 75, 142
NlaIV GGNNCC 2 cut(s) 392, 393
NspI RCATGY 1 cut(s) 75
PciI ACATGT 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 22, 377
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 2 cut(s) 60, 175
PpuMI RGGWCCY 1 cut(s) 391
PscI ACATGT 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 392, 393
PspPI GGNCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 391
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 31, 346
RsaNI GTAC 2 cut(s) 30, 345
SaqAI TTAA 2 cut(s) 429, 501
SatI GCNGC 2 cut(s) 59, 174
Sau96I GGNCC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 284
SetI ASST 7 cut(s) 14, 63, 103, 119, 132, 169, 487
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 391
Sse9I AATT 3 cut(s) 51, 88, 358
SsiI CCGC 2 cut(s) 56, 458
SspMI CTAG 2 cut(s) 17, 275
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 14, 119
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 51, 88, 358
TatI WGTACW 2 cut(s) 29, 344
TfiI GAWTC 2 cut(s) 22, 377
Tru1I TTAA 2 cut(s) 429, 501
Tru9I TTAA 2 cut(s) 429, 501
TseI GCWGC 2 cut(s) 58, 173
TspDTI ATGAA 3 cut(s) 17, 111, 450
Van91I CCANNNNNTGG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 2 cut(s) 51, 358
XceI RCATGY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 17, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.