FvH4_3g08950

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001595
Physical Location & Seq
Reverse (-)
5236116 .. 5236793
678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08950.t1

Sequence Viewer

Length: 495 bp
ATGGCAGCCAGCAATGTCATCTTCAACCTCTCAAGGTCACCGTTACCTCAATCCCCGGCTTCACACTCTCTCAGTCCCTCCCTCAAAACCTCCAGGGTTTGCTTCACCTCCGCCTCGGAATTCTCCAAGCAGGGTCGAAATGCAACGGAGAAGAGTATTGATTACTCGAGTTCCCGCTGGGCGTATGCCGGAAAGGACTGGAGTACTAAAGCAAAGCCAACCATGGAAGAAGATGTCGAAGATGGCAAGCCACTCTTGGAGAAAATTACGGGGGCAGCGACGGAGTACGCGGAGGAAACGATGGAGAACGTGAAAGGCGCATCGGAGGCTATATCGGGGTCTGCCACGGAATATGCAGATGATGCAAAGAAGAAGACAAATGAGGCAGCGGAGACTATAGCGGCCAAGGCGGAGGAGGGGACTAACAAGGTGGCGGAGCCGGAGACGACGGAGAGTGACAGTGAGAAGGTCAAGGAGACGGCGGAGAATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

165

Amino Acids

17.58

Weight (kDa)

4.79

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 8 cut(s) 111, 175, 290, 389, 401, 410, 434, 482
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 205, 287
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 92
Alw26I GTCTC 3 cut(s) 386, 437, 470
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 5, 275, 386
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 30, 97
AvaI CYCGRG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 17, 287, 398
BccI CCATC 2 cut(s) 236, 295
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 3 cut(s) 386, 437, 470
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 4 cut(s) 6, 276, 387, 402
BlsI GCNGC 4 cut(s) 7, 277, 388, 403
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 56, 94
BmeT110I CYCGRG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 56, 94
BmsI GCATC 2 cut(s) 329, 352
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 2 cut(s) 76, 220
BpuEI CTTGAG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 6 cut(s) 54, 93, 114, 222, 345, 405
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 6 cut(s) 54, 93, 114, 222, 345, 405
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 3 cut(s) 17, 287, 398
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 3 cut(s) 56, 189, 440
BslFI GGGAC 2 cut(s) 60, 433
BsmAI GTCTC 3 cut(s) 386, 437, 470
BsmBI CGTCTC 2 cut(s) 437, 470
BsmFI GGGAC 2 cut(s) 60, 433
BsnI GGCC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 8 cut(s) 111, 175, 290, 389, 401, 410, 434, 482
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 6 cut(s) 54, 93, 114, 222, 345, 405
BssT1I CCWWGG 2 cut(s) 222, 405
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 42, 461
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 10, 248
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 2 cut(s) 222, 345
BstEII GGTNACC 1 cut(s) 36
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 320
BstMAI GTCTC 3 cut(s) 386, 437, 470
BstMWI GCNNNNNNNGC 3 cut(s) 326, 362, 407
BstNI CCWGG 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 54, 92
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 17, 287, 398
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 404
BtgI CCRYGG 2 cut(s) 222, 345
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 10, 248
CfoI GCGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 204, 286
CviAII CATG 1 cut(s) 223
CviJI RGCY 7 cut(s) 8, 59, 217, 250, 329, 404, 439
CviKI_1 RGCY 7 cut(s) 8, 59, 217, 250, 329, 404, 439
CviQI GTAC 2 cut(s) 204, 286
DdeI CTNAG 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 3 cut(s) 100, 425, 449
Eco130I CCWWGG 2 cut(s) 222, 405
Eco88I CYCGRG 1 cut(s) 166
Eco91I GGTNACC 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 2 cut(s) 222, 405
ErhI CCWWGG 2 cut(s) 222, 405
Esp3I CGTCTC 2 cut(s) 437, 470
FaeI CATG 1 cut(s) 226
FaiI YATR 6 cut(s) 186, 224, 332, 354, 398, 493
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 2 cut(s) 60, 433
FatI CATG 1 cut(s) 222
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 4 cut(s) 6, 276, 387, 402
Fsp4HI GCNGC 4 cut(s) 6, 276, 387, 402
GlaI GCGC 1 cut(s) 319
GluI GCNGC 4 cut(s) 6, 276, 387, 402
GsaI CCCAGC 1 cut(s) 181
GsuI CTGGAG 2 cut(s) 76, 220
HaeIII GGCC 1 cut(s) 404
HapII CCGG 3 cut(s) 56, 189, 440
HhaI GCGC 1 cut(s) 320
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HpaII CCGG 3 cut(s) 56, 189, 440
HphI GGTGA 2 cut(s) 30, 97
Hpy188I TCNGA 2 cut(s) 118, 325
Hpy99I CGWCG 2 cut(s) 283, 451
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 2 cut(s) 42, 461
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 143, 356, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 362, 407
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 9 cut(s) 22, 69, 79, 106, 116, 163, 184, 202, 453
Lsp1109I GCAGC 3 cut(s) 17, 287, 398
LweI GCATC 2 cut(s) 329, 352
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 36, 42, 455
MboII GAAGA 7 cut(s) 13, 163, 239, 242, 251, 382, 385
MluCI AATT 2 cut(s) 119, 264
MspA1I CMGCKG 2 cut(s) 177, 389
MspI CCGG 3 cut(s) 56, 189, 440
MspR9I CCNGG 2 cut(s) 56, 94
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 326, 362, 407
NciI CCSGG 1 cut(s) 56
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 2 cut(s) 36, 455
PaeR7I CTCGAG 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PkrI GCNGC 4 cut(s) 7, 277, 388, 403
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 438
PspXI VCTCGAGB 1 cut(s) 166
RsaI GTAC 2 cut(s) 205, 287
RsaNI GTAC 2 cut(s) 204, 286
SatI GCNGC 4 cut(s) 6, 276, 387, 402
ScaI AGTACT 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 56, 94
SetI ASST 8 cut(s) 30, 38, 49, 92, 110, 312, 432, 471
SfaNI GCATC 2 cut(s) 329, 352
SfcI CTRYAG 1 cut(s) 396
Sfr274I CTCGAG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 166
SmlI CTYRAG 2 cut(s) 31, 166
SmoI CTYRAG 2 cut(s) 31, 166
Sse9I AATT 2 cut(s) 119, 264
SsiI CCGC 8 cut(s) 111, 175, 290, 389, 401, 410, 434, 482
StyD4I CCNGG 2 cut(s) 54, 92
StyI CCWWGG 2 cut(s) 222, 405
TaaI ACNGT 2 cut(s) 42, 461
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 136, 167, 237
TasI AATT 2 cut(s) 119, 264
TatI WGTACW 1 cut(s) 203
TauI GCSGC 1 cut(s) 404
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 2 cut(s) 36, 455
TseI GCWGC 3 cut(s) 5, 275, 386
Tsp45I GTSAC 2 cut(s) 36, 455
TspGWI ACGGA 4 cut(s) 161, 296, 362, 464
TspRI CASTG 1 cut(s) 466
XapI RAATTY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.