Prupe.4G049700_v2.0.a1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001595
Physical Location & Seq
Forward (+)
2377967 .. 2379456
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G049700.1

Sequence Viewer

Length: 909 bp
ATGGCAGTGATTTCCCTAGCAAGAAATGTCGTCTTCAACCTCTCGAGGTCTTTTCCTCAAGCCTCTTCCTCAATCTCTCTCAGATATTCTTCTCGGAAAGTCTCCCGGGTCTGCTTCACCTCTGCCTCCAAATTCTCCGAGGGTCGAAATGCGGCGGAAGAGAACAGGGGAGATTCAAGGGTTGACAGCAGGGGCTCTGCCGACAAGAAATGGAAGAACAAGGAACGAGAGTACGGGTCTGTTGACGTGAGTAGGAAGGCAAAAGAACCCATGGAAGAAGGCCTGGAAAAAAGCAAACAAAAAGCAGAGGAAGTGAAAGACACAACCAAGGAGTATGCACAGGAAGCGAAAGAGAAGACAAAGGGCGCAGTGGAGATGGTGGCAGAGAAGGCAAAACAGGGAACAAACAGAGCAGCCGAGACAGCAGAGAGCGCCAAGGAGAAAGCCAAAGACTACTCGTACAAGTCAGAAAAGAAGACCAAAGATATGGCGGGGACTCTAGCGGATAAGGCAAAAGAAGGGACTTACAAGGCCGCAGAGACGGCGGAGACTGCAAAGAAGAAGGCGAAAGAGGGCGCGTGGGGGGTGAAGGAGAAAACAGAGGATGTAGCCGCGACGGCGGAGGAGAAGGTGAAGGAGGGGACGAGCAAGGCGGCGAAGACGGCGAAGGATAAAGTGAAGGGGGCGTGGGGTGCGGTGAAGGAGACAGGGGAGAAGATTAAGGAGACGGTGGTTGGGGCGCCAGGTGAGGAGGTGGGGGTTGGGTTTTTGGATGAGGACACTAGAGACAGTGAAGATGAAATTCATGTTGATGTTGATGGTGATGGTGTGGCGGAAGGGAAGGTGGTGGGTGCGGATGTTGTGGAACGCAGGCGGCGTGCTGCCAATCCTGATGGGAAGAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

32.8

Weight (kDa)

8.97

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 739
AccII CGCG 2 cut(s) 578, 614
AcsI RAATTY 2 cut(s) 131, 801
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 2 cut(s) 233, 461
AgsI TTSAA 2 cut(s) 37, 177
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 2 cut(s) 282, 742
Alw26I GTCTC 7 cut(s) 106, 413, 533, 542, 698, 719, 780
Ama87I CYCGRG 2 cut(s) 43, 105
AoxI GGCC 2 cut(s) 280, 531
ApeKI GCWGC 2 cut(s) 413, 881
ApoI RAATTY 2 cut(s) 131, 801
AspLEI GCGC 4 cut(s) 368, 434, 578, 742
AsuC2I CCSGG 2 cut(s) 106, 107
AsuHPI GGTGA 6 cut(s) 109, 598, 643, 709, 758, 833
AvaI CYCGRG 2 cut(s) 43, 105
BanI GGYRCC 1 cut(s) 739
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 4 cut(s) 25, 362, 482, 665
BbvI GCAGC 2 cut(s) 425, 868
BccI CCATC 4 cut(s) 370, 812, 818, 887
BceAI ACGGC 3 cut(s) 558, 633, 678
BciT130I CCWGG 2 cut(s) 284, 744
BcnI CCSGG 2 cut(s) 106, 107
BcoDI GTCTC 7 cut(s) 106, 413, 533, 542, 698, 719, 780
BfaI CTAG 3 cut(s) 17, 500, 783
BfoI RGCGCY 2 cut(s) 435, 743
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 7 cut(s) 153, 414, 534, 612, 654, 875, 882
BlsI GCNGC 7 cut(s) 154, 415, 535, 613, 655, 876, 883
Bme1390I CCNGG 4 cut(s) 106, 107, 284, 744
BmeT110I CYCGRG 2 cut(s) 43, 105
BmgBI CACGTC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 4 cut(s) 106, 107, 284, 744
BpiI GAAGAC 4 cut(s) 25, 362, 482, 665
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 106, 107
BsaHI GRCGYC 1 cut(s) 740
BsaJI CCNNGG 5 cut(s) 105, 138, 270, 327, 435
BseBI CCWGG 2 cut(s) 284, 744
BseDI CCNNGG 5 cut(s) 105, 138, 270, 327, 435
BseGI GGATG 3 cut(s) 610, 778, 862
BseMII CTCAG 1 cut(s) 94
BseRI GAGGAG 2 cut(s) 638, 764
BseXI GCAGC 2 cut(s) 425, 868
Bsh1236I CGCG 2 cut(s) 578, 614
BshFI GGCC 2 cut(s) 282, 533
BshNI GGYRCC 1 cut(s) 739
BsiHKCI CYCGRG 2 cut(s) 43, 105
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 3 cut(s) 508, 535, 655
BsmAI GTCTC 7 cut(s) 106, 413, 533, 542, 698, 719, 780
BsmBI CGTCTC 2 cut(s) 533, 719
BsmFI GGGAC 3 cut(s) 508, 535, 655
BsnI GGCC 2 cut(s) 282, 533
BsoBI CYCGRG 2 cut(s) 43, 105
Bsp1286I GDGCHC 1 cut(s) 197
Bsp19I CCATGG 1 cut(s) 270
BspANI GGCC 2 cut(s) 282, 533
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 2 cut(s) 578, 614
BspLI GGNNCC 1 cut(s) 741
BspT107I GGYRCC 1 cut(s) 739
BssECI CCNNGG 5 cut(s) 105, 138, 270, 327, 435
BssNI GRCGYC 1 cut(s) 740
BssT1I CCWWGG 3 cut(s) 270, 327, 435
Bst2UI CCWGG 2 cut(s) 284, 744
Bst4CI ACNGT 2 cut(s) 730, 791
Bst6I CTCTTC 2 cut(s) 70, 153
BstACI GRCGYC 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 872, 879
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 610, 778, 862
BstFNI CGCG 2 cut(s) 578, 614
BstH2I RGCGCY 2 cut(s) 435, 743
BstHHI GCGC 4 cut(s) 368, 434, 578, 742
BstMAI GTCTC 7 cut(s) 106, 413, 533, 542, 698, 719, 780
BstNI CCWGG 2 cut(s) 284, 744
BstSCI CCNGG 4 cut(s) 104, 105, 282, 742
BstUI CGCG 2 cut(s) 578, 614
BstV1I GCAGC 2 cut(s) 425, 868
BstV2I GAAGAC 4 cut(s) 25, 362, 482, 665
BstXI CCANNNNNNTGG 1 cut(s) 487
BsuRI GGCC 2 cut(s) 282, 533
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 3 cut(s) 610, 778, 862
BtsI GCAGTG 2 cut(s) 12, 375
BtsIMutI CAGTG 3 cut(s) 12, 375, 796
Cac8I GCNNGC 2 cut(s) 872, 879
CfoI GCGC 4 cut(s) 368, 434, 578, 742
Cfr9I CCCGGG 1 cut(s) 105
Csp6I GTAC 2 cut(s) 232, 460
CviAII CATG 2 cut(s) 271, 806
CviJI RGCY 7 cut(s) 62, 195, 282, 416, 446, 533, 611
CviKI_1 RGCY 7 cut(s) 62, 195, 282, 416, 446, 533, 611
CviQI GTAC 2 cut(s) 232, 460
DdeI CTNAG 1 cut(s) 80
DinI GGCGCC 1 cut(s) 741
Eam1104I CTCTTC 2 cut(s) 70, 153
EarI CTCTTC 2 cut(s) 70, 153
EciI GGCGGA 4 cut(s) 170, 560, 635, 848
Eco130I CCWWGG 3 cut(s) 270, 327, 435
Eco147I AGGCCT 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 197
Eco88I CYCGRG 2 cut(s) 43, 105
EcoRII CCWGG 2 cut(s) 282, 742
EcoT14I CCWWGG 3 cut(s) 270, 327, 435
EcoT38I GRGCYC 1 cut(s) 197
EgeI GGCGCC 1 cut(s) 741
EheI GGCGCC 1 cut(s) 741
ErhI CCWWGG 3 cut(s) 270, 327, 435
Esp3I CGTCTC 2 cut(s) 533, 719
FaeI CATG 2 cut(s) 274, 809
FaiI YATR 4 cut(s) 272, 336, 488, 807
FaqI GGGAC 3 cut(s) 508, 535, 655
FatI CATG 2 cut(s) 270, 805
FauI CCCGC 1 cut(s) 484
Fnu4HI GCNGC 7 cut(s) 153, 414, 534, 612, 654, 875, 882
FokI GGATG 3 cut(s) 617, 785, 869
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 7 cut(s) 153, 414, 534, 612, 654, 875, 882
FspBI CTAG 3 cut(s) 17, 500, 783
GlaI GCGC 4 cut(s) 367, 433, 577, 741
GluI GCNGC 7 cut(s) 153, 414, 534, 612, 654, 875, 882
HaeII RGCGCY 2 cut(s) 435, 743
HaeIII GGCC 2 cut(s) 282, 533
HapII CCGG 1 cut(s) 106
HhaI GCGC 4 cut(s) 368, 434, 578, 742
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 2 cut(s) 274, 809
Hin6I GCGC 4 cut(s) 366, 432, 576, 740
HinP1I GCGC 4 cut(s) 366, 432, 576, 740
HincII GTYRAC 2 cut(s) 184, 244
HindII GTYRAC 2 cut(s) 184, 244
HinfI GANTC 2 cut(s) 173, 496
HpaII CCGG 1 cut(s) 106
HphI GGTGA 6 cut(s) 109, 598, 643, 709, 758, 833
Hpy166II GTNNAC 2 cut(s) 184, 244
Hpy188I TCNGA 4 cut(s) 83, 96, 139, 469
Hpy188III TCNNGA 2 cut(s) 43, 890
Hpy8I GTNNAC 2 cut(s) 184, 244
Hpy99I CGWCG 1 cut(s) 619
HpyCH4III ACNGT 2 cut(s) 730, 791
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 338, 554
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 2 cut(s) 274, 809
HspAI GCGC 4 cut(s) 366, 432, 576, 740
KasI GGCGCC 1 cut(s) 739
Lsp1109I GCAGC 2 cut(s) 425, 868
MaeI CTAG 3 cut(s) 17, 500, 783
MaeII ACGT 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 131, 801
Mly113I GGCGCC 1 cut(s) 740
MlyI GAGTC 1 cut(s) 490
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 810
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 4 cut(s) 106, 107, 284, 744
MvaI CCWGG 2 cut(s) 284, 744
MvnI CGCG 2 cut(s) 578, 614
NarI GGCGCC 1 cut(s) 740
NciI CCSGG 2 cut(s) 106, 107
NcoI CCATGG 1 cut(s) 270
NlaIII CATG 2 cut(s) 274, 809
NlaIV GGNNCC 1 cut(s) 741
NmeAIII GCCGAG 1 cut(s) 442
PaeR7I CTCGAG 1 cut(s) 43
PceI AGGCCT 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 7 cut(s) 154, 415, 535, 613, 655, 876, 883
PleI GAGTC 1 cut(s) 490
PluTI GGCGCC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 282, 742
PspGI CCWGG 2 cut(s) 282, 742
PspN4I GGNNCC 1 cut(s) 741
RsaI GTAC 2 cut(s) 233, 461
RsaNI GTAC 2 cut(s) 232, 460
RseI CAYNNNNRTG 1 cut(s) 810
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 7 cut(s) 153, 414, 534, 612, 654, 875, 882
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 4 cut(s) 106, 107, 284, 744
SduI GDGCHC 1 cut(s) 197
SetI ASST 8 cut(s) 42, 50, 122, 249, 633, 748, 756, 846
SfoI GGCGCC 1 cut(s) 741
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmaI CCCGGG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 810
SmlI CTYRAG 2 cut(s) 43, 57
SmoI CTYRAG 2 cut(s) 43, 57
Sse9I AATT 2 cut(s) 131, 801
SseBI AGGCCT 1 cut(s) 282
SspDI GGCGCC 1 cut(s) 739
SspMI CTAG 3 cut(s) 17, 500, 783
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 104, 105, 282, 742
StyI CCWWGG 3 cut(s) 270, 327, 435
TaaI ACNGT 2 cut(s) 730, 791
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 44, 145
TasI AATT 2 cut(s) 131, 801
TauI GCSGC 5 cut(s) 155, 536, 614, 656, 877
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 3 cut(s) 12, 375, 796
TseI GCWGC 2 cut(s) 413, 881
TspDTI ATGAA 2 cut(s) 794, 813
TspMI CCCGGG 1 cut(s) 105
TspRI CASTG 3 cut(s) 12, 375, 796
XapI RAATTY 2 cut(s) 131, 801
XhoI CTCGAG 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 105
XspI CTAG 3 cut(s) 17, 500, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.