Rmu_sc0000650.1_g000027

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000650.1
OG0001595
Physical Location & Seq
Forward (+)
82707 .. 83279
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000650.1_g000027.1.cds

Sequence Viewer

Length: 483 bp
atggcagccagcaatgtcatcttcaacatctcgaggtcaccgttaactcaatccccggcttcacactctctcagtccctctctcaaaacctccagggtttgcttcacctctgcttccaaattctccaagggtcgaaatgcagcggaaaagaataaggactactcaagttcccgccgggcgtatgatggaaagaactggtgtaccaaagcaaagccaaccatggaagaagatgtcgaagatgacaagccactcttggagaaaattaagggggcagcgacggactacgcggaagaaacgatggagaacgtaaaaggcgcatcggagactatatcagagacgaccaaggagtatgcagatgatgcaaaggagaagacaaacgaggcagcggagactatagcggccaaggcagaggaggggactaacaaggtggtggagccgaagacgacggagagtgacagtgagaatgtcaaggagagtcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

160

Amino Acids

17.45

Weight (kDa)

5.13

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 5 cut(s) 143, 172, 287, 386, 398
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 92
Alw26I GTCTC 3 cut(s) 317, 329, 383
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 5, 140, 272, 383
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 317
AsuC2I CCSGG 2 cut(s) 56, 176
AsuHPI GGTGA 2 cut(s) 30, 97
AvaI CYCGRG 1 cut(s) 31
BaeI ACNNNNGTAYC 2 cut(s) 184, 217
BbsI GAAGAC 2 cut(s) 377, 446
BbvI GCAGC 4 cut(s) 17, 152, 284, 395
BccI CCATC 2 cut(s) 179, 292
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 2 cut(s) 56, 176
BcoDI GTCTC 3 cut(s) 317, 329, 383
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 5 cut(s) 6, 141, 273, 384, 399
BlsI GCNGC 5 cut(s) 7, 142, 274, 385, 400
Bme1390I CCNGG 3 cut(s) 56, 94, 176
BmeT110I CYCGRG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 3 cut(s) 56, 94, 176
BmsI GCATC 2 cut(s) 326, 349
BpiI GAAGAC 2 cut(s) 377, 446
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 56, 176
BsaJI CCNNGG 6 cut(s) 54, 93, 126, 219, 342, 402
BsaXI ACNNNNNCTCC 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 6 cut(s) 54, 93, 126, 219, 342, 402
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 4 cut(s) 17, 152, 284, 395
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 2 cut(s) 56, 175
BslFI GGGAC 2 cut(s) 60, 430
BsmAI GTCTC 3 cut(s) 317, 329, 383
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 60, 430
BsnI GGCC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 5 cut(s) 143, 172, 287, 386, 398
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 6 cut(s) 54, 93, 126, 219, 342, 402
BssT1I CCWWGG 4 cut(s) 126, 219, 342, 402
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 42, 458
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 36
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 3 cut(s) 317, 329, 383
BstMWI GCNNNNNNNGC 2 cut(s) 359, 404
BstNI CCWGG 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 36
BstSCI CCNGG 3 cut(s) 54, 92, 174
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 17, 152, 284, 395
BstV2I GAAGAC 2 cut(s) 377, 446
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 8, 59, 214, 247, 401, 436
CviKI_1 RGCY 6 cut(s) 8, 59, 214, 247, 401, 436
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 399
Eco130I CCWWGG 4 cut(s) 126, 219, 342, 402
Eco88I CYCGRG 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 4 cut(s) 126, 219, 342, 402
ErhI CCWWGG 4 cut(s) 126, 219, 342, 402
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 183, 221, 329, 351, 395
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 60, 430
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 5 cut(s) 6, 141, 273, 384, 399
Fsp4HI GCNGC 5 cut(s) 6, 141, 273, 384, 399
GlaI GCGC 1 cut(s) 316
GluI GCNGC 5 cut(s) 6, 141, 273, 384, 399
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 1 cut(s) 401
HapII CCGG 2 cut(s) 56, 175
HhaI GCGC 1 cut(s) 317
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 1 cut(s) 475
HpaI GTTAAC 1 cut(s) 45
HpaII CCGG 2 cut(s) 56, 175
HphI GGTGA 2 cut(s) 30, 97
Hpy166II GTNNAC 2 cut(s) 45, 201
Hpy188I TCNGA 2 cut(s) 322, 334
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 45, 201
Hpy99I CGWCG 2 cut(s) 280, 448
HpyCH4III ACNGT 2 cut(s) 42, 458
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 140, 353, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 404
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 6 cut(s) 22, 69, 79, 106, 181, 188
Lsp1109I GCAGC 4 cut(s) 17, 152, 284, 395
LweI GCATC 2 cut(s) 326, 349
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 36, 452
MboII GAAGA 7 cut(s) 13, 236, 239, 248, 302, 382, 451
MluCI AATT 2 cut(s) 119, 261
MnlI CCTC 7 cut(s) 27, 88, 100, 118, 373, 403, 406
MseI TTAA 2 cut(s) 44, 264
MspA1I CMGCKG 2 cut(s) 143, 386
MspI CCGG 2 cut(s) 56, 175
MspR9I CCNGG 3 cut(s) 56, 94, 176
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 359, 404
NciI CCSGG 2 cut(s) 56, 176
NcoI CCATGG 1 cut(s) 219
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 2 cut(s) 36, 452
PaeR7I CTCGAG 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PkrI GCNGC 5 cut(s) 7, 142, 274, 385, 400
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 435
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 44, 264
SatI GCNGC 5 cut(s) 6, 141, 273, 384, 399
ScrFI CCNGG 3 cut(s) 56, 94, 176
SetI ASST 5 cut(s) 38, 92, 110, 309, 429
SfaNI GCATC 2 cut(s) 326, 349
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 2 cut(s) 31, 163
SmoI CTYRAG 2 cut(s) 31, 163
Sse9I AATT 2 cut(s) 119, 261
SsiI CCGC 5 cut(s) 143, 172, 287, 386, 398
StyD4I CCNGG 3 cut(s) 54, 92, 174
StyI CCWWGG 4 cut(s) 126, 219, 342, 402
TaaI ACNGT 2 cut(s) 42, 458
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 32, 133, 234
TasI AATT 2 cut(s) 119, 261
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 44, 264
Tru9I TTAA 2 cut(s) 44, 264
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 2 cut(s) 36, 452
TseI GCWGC 4 cut(s) 5, 140, 272, 383
Tsp45I GTSAC 2 cut(s) 36, 452
TspGWI ACGGA 2 cut(s) 293, 461
TspRI CASTG 1 cut(s) 463
XapI RAATTY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.