pycom05g28880

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0001595
Physical Location & Seq
Reverse (-)
29457849 .. 29458636
788 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28880.1

Sequence Viewer

Length: 690 bp
ATGGCAGTGCTTTCTGTAGCAGATAATGTTTTGTTCAACCTCTCCAGATCTTTTCCTCGATCCCCTCAGCCATTCTCTCTCAGATATTCACCTCAGAAAGTCTCCCGCGTCTGCTTCACCTCCGCCTCCAAATCCGAGGGACGAAATGTGGCAGGAGAGATCAAAGGATATGACAAAGCGAAAGAAACCATGGGAGAAGGCCTAGAAAAGACGAAGCGAAAAGCCGAGGAAATGAAAGAGACGACCAAGGATTACGCGCAGGAAGCAGAGGAGAAGACGAAGAGTGCAGCTGAGACTATGGAGGAGAAGGCGAAAGAGGGAACGAACAGAGCAGCGGAGACGGTGGAGAGCACCCAGGAGAAAGCTAAAGAGTACGGTTACGAGACTAAGGAGAAGACCAAGGAGATGGCGGACACTGTGACAGAAAAAGCGGAGGAGGGGACTCGGAGGGCAGCCGAGACAGCGGAGAGCGTCAAAGAGAAGGCCAAAAAGAATATGTCGGAGATGGGGGAGAAAACAGAGGATGCGGTGGGAACTGTGGCGGAGAAGGTTGAGGAGGGGCGTAGTAAGGCGGCGGAGACGGCAAAGGACACAGTGGAAGGGGCGTGGGGGGCGGTGAAGGAGACAGGGCAGAAGATTAAGGACACGGTGGTAGCTCCTGATGAGGAAGTGGGAGGTGGTGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

24.98

Weight (kDa)

5.31

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 108, 257
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 682
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 290, 365, 656
AluI AGCT 3 cut(s) 290, 365, 656
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 8 cut(s) 106, 233, 287, 332, 377, 452, 572, 617
AlwI GGATC 1 cut(s) 54
AoxI GGCC 3 cut(s) 199, 483, 682
ApeKI GCWGC 3 cut(s) 287, 332, 452
AspLEI GCGC 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 81, 109, 628
BalI TGGCCA 1 cut(s) 684
BbsI GAAGAC 2 cut(s) 281, 401
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 299, 344, 464
BccI CCATC 2 cut(s) 400, 499
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 8 cut(s) 106, 233, 287, 332, 377, 452, 572, 617
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 47
BisI GCNGC 4 cut(s) 288, 333, 453, 573
BlsI GCNGC 4 cut(s) 289, 334, 454, 574
Bme1390I CCNGG 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 514
BpiI GAAGAC 2 cut(s) 281, 401
BpmI CTGGAG 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 66
BsaJI CCNNGG 6 cut(s) 135, 189, 225, 246, 354, 399
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 6 cut(s) 135, 189, 225, 246, 354, 399
BseGI GGATG 1 cut(s) 529
BseMII CTCAG 4 cut(s) 80, 94, 107, 282
BseRI GAGGAG 4 cut(s) 284, 317, 449, 569
BseXI GCAGC 3 cut(s) 299, 344, 464
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 108, 257
BshFI GGCC 3 cut(s) 201, 485, 684
BsiHKAI GWGCWC 1 cut(s) 353
BslFI GGGAC 2 cut(s) 153, 454
BsmAI GTCTC 8 cut(s) 106, 233, 287, 332, 377, 452, 572, 617
BsmBI CGTCTC 3 cut(s) 233, 332, 572
BsmFI GGGAC 2 cut(s) 153, 454
BsnI GGCC 3 cut(s) 201, 485, 684
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 47, 59, 159
Bsp19I CCATGG 1 cut(s) 189
BspANI GGCC 3 cut(s) 201, 485, 684
BspCNI CTCAG 4 cut(s) 79, 93, 106, 283
BspFNI CGCG 2 cut(s) 108, 257
BspPI GGATC 1 cut(s) 54
BssECI CCNNGG 6 cut(s) 135, 189, 225, 246, 354, 399
BssMI GATC 3 cut(s) 47, 59, 159
BssT1I CCWWGG 3 cut(s) 189, 246, 399
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 6 cut(s) 343, 377, 418, 538, 595, 649
Bst6I CTCTTC 1 cut(s) 275
BstDEI CTNAG 5 cut(s) 66, 80, 93, 291, 387
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 108, 257
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 50, 62, 162
BstMAI GTCTC 8 cut(s) 106, 233, 287, 332, 377, 452, 572, 617
BstMBI GATC 3 cut(s) 47, 59, 159
BstMWI GCNNNNNNNGC 4 cut(s) 263, 461, 581, 611
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 2 cut(s) 108, 257
BstV1I GCAGC 3 cut(s) 299, 344, 464
BstV2I GAAGAC 2 cut(s) 281, 401
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 3 cut(s) 201, 485, 684
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 414, 600
CfoI GCGC 1 cut(s) 259
CseI GACGC 2 cut(s) 97, 460
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 190
CviJI RGCY 9 cut(s) 70, 201, 224, 290, 365, 455, 485, 656, 684
CviKI_1 RGCY 9 cut(s) 70, 201, 224, 290, 365, 455, 485, 656, 684
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 5 cut(s) 66, 80, 93, 291, 387
DpnI GATC 3 cut(s) 49, 61, 161
DpnII GATC 3 cut(s) 47, 59, 159
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 4 cut(s) 112, 425, 557, 590
Eco130I CCWWGG 3 cut(s) 189, 246, 399
Eco147I AGGCCT 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 3 cut(s) 189, 246, 399
ErhI CCWWGG 3 cut(s) 189, 246, 399
Esp3I CGTCTC 3 cut(s) 233, 332, 572
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 171, 191, 299, 497
FaqI GGGAC 2 cut(s) 153, 454
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 4 cut(s) 288, 333, 453, 573
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 4 cut(s) 288, 333, 453, 573
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 258
GluI GCNGC 4 cut(s) 288, 333, 453, 573
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 3 cut(s) 201, 485, 684
HgaI GACGC 2 cut(s) 97, 460
HhaI GCGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 442
HphI GGTGA 3 cut(s) 81, 109, 628
Hpy188I TCNGA 5 cut(s) 83, 96, 136, 447, 502
Hpy188III TCNNGA 2 cut(s) 45, 659
HpyAV CCTTC 6 cut(s) 191, 301, 475, 541, 593, 613
HpyCH4III ACNGT 6 cut(s) 343, 377, 418, 538, 595, 649
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 461, 581, 611
HpyF3I CTNAG 5 cut(s) 66, 80, 93, 291, 387
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 3 cut(s) 47, 59, 159
LmnI GCTCC 1 cut(s) 661
LpnPI CCDG 7 cut(s) 58, 138, 245, 341, 368, 612, 672
Lsp1109I GCAGC 3 cut(s) 299, 344, 464
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 377, 418
MalI GATC 3 cut(s) 49, 61, 161
MboI GATC 3 cut(s) 47, 59, 159
MboII GAAGA 4 cut(s) 286, 292, 406, 646
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 684
MscI TGGCCA 1 cut(s) 684
MseI TTAA 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 3 cut(s) 290, 335, 464
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 2 cut(s) 108, 257
MwoI GCNNNNNNNGC 4 cut(s) 263, 461, 581, 611
NcoI CCATGG 1 cut(s) 189
NdeII GATC 3 cut(s) 47, 59, 159
NlaIII CATG 1 cut(s) 193
NmeAIII GCCGAG 2 cut(s) 250, 481
NmuCI GTSAC 1 cut(s) 418
PceI AGGCCT 1 cut(s) 201
PkrI GCNGC 4 cut(s) 289, 334, 454, 574
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 4 cut(s) 288, 333, 453, 573
Sau3AI GATC 3 cut(s) 47, 59, 159
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 42, 94, 122, 292, 367, 552, 658, 679
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 15
SseBI AGGCCT 1 cut(s) 201
SspMI CTAG 1 cut(s) 203
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 3 cut(s) 189, 246, 399
TaaI ACNGT 6 cut(s) 343, 377, 418, 538, 595, 649
TaqI TCGA 1 cut(s) 58
TauI GCSGC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 3 cut(s) 12, 421, 600
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 287, 332, 452
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 3 cut(s) 12, 421, 600
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.