Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Reverse (-)

5227136 .. 5228602

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGAGCCTTTCATTAGCGAAGAATCTCATCTTCAACCTCTCGAAGTCGTTTCCTCAATCCCAAGTTTCACTCTCTCTGAGACCCTCTCTCAAAATCTCCAGGGTCTGCTTCACCTCCGCCTCCAAATTCTCCGAGGGTCGAAATGCGCCAGAGGAGAGGGATTCCAATTCCCACCGGACGTATGCCGATAAGGACTGGAGGGAGAAGGAAAGAGGGTACGGCTCTGCTGACGTGAGCAAGCACGCGAAAGAAACCATGGAAGAAGGACTAGAGAGAACCAAGCGGGAAGCAGAGGGGATGAAGGAGAGAACGAAGGATTACGCCGACGAAGCTAAAGAGAAGACAAAGAGCGCGGCGGAAACAATGGCGGAGAAGGCCAAAGAGGGAACTCAGAAGGCTGCAGAGGCTGCGGATAGTGCTAAGGAGAATGCAAAGGGTTACGCTTATGATGCTAAGGAGAATGCAAAGGATTACGCTTATGATGCTAAGGAGAAGACAAAGGATGCTAAGGAGAAGACAAAGGACATGGCTGGAACTGTAGCTGAGAAGGCAAAGGAGGGGACTCATAAGATGGCGGATACTGCGGATAGTGCCAAGGAGAAGGCTACCGATTACGCTTATGATGCTAAGGAGAAGACAAAAGACATGGCTGGAACTGTAGCAGATACGGCGAAGGAAGGGACCCACAAGGTGGCGGAGACAGCGGATAGTGCTAAGGAGAAGGCGGAGGGTATGGCAGAGATGGTGGTGGATAAGGTGAAGGGAGGGACGCATAAGGCGGCAGAGACTGTGAAGGATACGGTGAAGGGCGCTTGGGAGGCAACCAAGGAGACGGGGCAGTCAATCAAGGAGGCCGTGGTGGGTTCTGATGGGCGGGTGGATGACACCTCATCAGATGATGAGGATGTCGTGGTTGATCTTGAAGACGACACGTCCGGGAAGGTGATGGATGCGGATGTCATTGAGCGGAGGCGTGCGGCTGGATATAAGAAGGCTGGTGACAAGAAATATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

36.96

Weight (kDa)

5.7

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	970
AccII	CGCG	2 cut(s)	248, 356
AcsI	RAATTY	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	694
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	2 cut(s)	37, 926
AhdI	GACNNNNNGTC	1 cut(s)	934
AjiI	CACGTC	2 cut(s)	235, 936
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	335, 545
AluI	AGCT	2 cut(s)	335, 545
Alw26I	GTCTC	4 cut(s)	76, 695, 782, 827
AlwNI	CAGNNNCTG	3 cut(s)	108, 410, 791
AoxI	GGCC	2 cut(s)	378, 855
ApeKI	GCWGC	2 cut(s)	401, 410
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	3 cut(s)	151, 356, 815
AspS9I	GGNCC	1 cut(s)	684
AsuC2I	CCSGG	1 cut(s)	940
AsuHPI	GGTGA	5 cut(s)	106, 772, 817, 958, 1013
AvaII	GGWCC	1 cut(s)	684
BbsI	GAAGAC	5 cut(s)	350, 503, 524, 644, 933
BbvI	GCAGC	2 cut(s)	388, 397
BccI	CCATC	4 cut(s)	568, 739, 866, 943
BceAI	ACGGC	3 cut(s)	238, 687, 842
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	2 cut(s)	574, 793
BcnI	CCSGG	1 cut(s)	940
BcoDI	GTCTC	4 cut(s)	76, 695, 782, 827
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	3 cut(s)	402, 540, 660
BfoI	RGCGCY	1 cut(s)	816
BfuI	GTATCC	2 cut(s)	574, 793
BisI	GCNGC	5 cut(s)	357, 402, 411, 783, 981
BlsI	GCNGC	5 cut(s)	358, 403, 412, 784, 982
Bme1390I	CCNGG	2 cut(s)	103, 940
Bme18I	GGWCC	1 cut(s)	684
BmeRI	GACNNNNNGTC	1 cut(s)	934
BmgBI	CACGTC	2 cut(s)	235, 936
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	685, 686
BmrFI	CCNGG	2 cut(s)	103, 940
BmsI	GCATC	5 cut(s)	442, 475, 496, 616, 943
BpiI	GAAGAC	5 cut(s)	350, 503, 524, 644, 933
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	2 cut(s)	85, 220
Bpu10I	CCTNAGC	6 cut(s)	423, 456, 489, 510, 630, 717
BpuMI	CCSGG	1 cut(s)	940
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	6 cut(s)	102, 135, 258, 597, 828, 858
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	6 cut(s)	102, 135, 258, 597, 828, 858
BseGI	GGATG	6 cut(s)	306, 511, 889, 913, 958, 964
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	3 cut(s)	71, 407, 537
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	388, 397
Bsh1236I	CGCG	2 cut(s)	248, 356
BshFI	GGCC	2 cut(s)	380, 857
BsiSI	CCGG	2 cut(s)	178, 939
BslFI	GGGAC	3 cut(s)	577, 697, 784
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	4 cut(s)	76, 695, 782, 827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	3 cut(s)	577, 697, 784
BsmI	GAATGC	2 cut(s)	436, 469
BsnI	GGCC	2 cut(s)	380, 857
Bso31I	GGTCTC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	919
Bsp19I	CCATGG	1 cut(s)	258
BspANI	GGCC	2 cut(s)	380, 857
BspCNI	CTCAG	3 cut(s)	72, 406, 538
BspFNI	CGCG	2 cut(s)	248, 356
BspLI	GGNNCC	2 cut(s)	685, 686
BspMAI	CTGCAG	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	970
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	6 cut(s)	102, 135, 258, 597, 828, 858
BssMI	GATC	1 cut(s)	919
BssT1I	CCWWGG	3 cut(s)	258, 597, 828
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	4 cut(s)	541, 661, 793, 805
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	4 cut(s)	7, 242, 246, 978
BstDEI	CTNAG	9 cut(s)	80, 393, 423, 456, 489, 510, 546, 630, 717
BstDSI	CCRYGG	2 cut(s)	258, 858
BstF5I	GGATG	6 cut(s)	306, 511, 889, 913, 958, 964
BstFNI	CGCG	2 cut(s)	248, 356
BstH2I	RGCGCY	1 cut(s)	816
BstHHI	GCGC	3 cut(s)	151, 356, 815
BstKTI	GATC	1 cut(s)	922
BstMAI	GTCTC	4 cut(s)	76, 695, 782, 827
BstMBI	GATC	1 cut(s)	919
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	101, 938
BstSFI	CTRYAG	3 cut(s)	402, 540, 660
BstUI	CGCG	2 cut(s)	248, 356
BstV1I	GCAGC	2 cut(s)	388, 397
BstV2I	GAAGAC	5 cut(s)	350, 503, 524, 644, 933
BsuI	GTATCC	2 cut(s)	574, 793
BsuRI	GGCC	2 cut(s)	380, 857
BtgI	CCRYGG	2 cut(s)	258, 858
BtrI	CACGTC	2 cut(s)	235, 936
BtsCI	GGATG	6 cut(s)	306, 511, 889, 913, 958, 964
Cac8I	GCNNGC	4 cut(s)	7, 242, 246, 978
CaiI	CAGNNNCTG	3 cut(s)	108, 410, 791
CfoI	GCGC	3 cut(s)	151, 356, 815
Cfr13I	GGNCC	1 cut(s)	684
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	3 cut(s)	259, 529, 649
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	9 cut(s)	80, 393, 423, 456, 489, 510, 546, 630, 717
DpnI	GATC	1 cut(s)	921
DpnII	GATC	1 cut(s)	919
DraIII	CACNNNGTG	1 cut(s)	694
DrdI	GACNNNNNNGTC	1 cut(s)	841
DriI	GACNNNNNGTC	1 cut(s)	934
DseDI	GACNNNNNNGTC	1 cut(s)	841
Eam1105I	GACNNNNNGTC	1 cut(s)	934
EciI	GGCGGA	6 cut(s)	109, 374, 386, 593, 713, 743
Eco130I	CCWWGG	3 cut(s)	258, 597, 828
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	3 cut(s)	258, 597, 828
ErhI	CCWWGG	3 cut(s)	258, 597, 828
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	3 cut(s)	262, 532, 652
FaqI	GGGAC	3 cut(s)	577, 697, 784
FatI	CATG	3 cut(s)	258, 528, 648
FauI	CCCGC	2 cut(s)	279, 870
Fnu4HI	GCNGC	5 cut(s)	357, 402, 411, 783, 981
FokI	GGATG	6 cut(s)	313, 518, 896, 920, 965, 971
Fsp4HI	GCNGC	5 cut(s)	357, 402, 411, 783, 981
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	3 cut(s)	150, 355, 814
GluI	GCNGC	5 cut(s)	357, 402, 411, 783, 981
GsuI	CTGGAG	2 cut(s)	85, 220
HaeII	RGCGCY	1 cut(s)	816
HaeIII	GGCC	2 cut(s)	380, 857
HapII	CCGG	2 cut(s)	178, 939
HgaI	GACGC	1 cut(s)	781
HhaI	GCGC	3 cut(s)	151, 356, 815
Hin1II	CATG	3 cut(s)	262, 532, 652
Hin6I	GCGC	3 cut(s)	149, 354, 813
HinP1I	GCGC	3 cut(s)	149, 354, 813
HinfI	GANTC	3 cut(s)	25, 164, 565
HpaII	CCGG	2 cut(s)	178, 939
HphI	GGTGA	5 cut(s)	106, 772, 817, 958, 1013
Hpy188I	TCNGA	5 cut(s)	81, 136, 396, 871, 898
Hpy188III	TCNNGA	2 cut(s)	43, 923
Hpy99I	CGWCG	1 cut(s)	332
HpyCH4III	ACNGT	4 cut(s)	541, 661, 793, 805
HpyCH4IV	ACGT	3 cut(s)	182, 234, 935
HpyCH4V	TGCA	3 cut(s)	404, 434, 467
HpyF3I	CTNAG	9 cut(s)	80, 393, 423, 456, 489, 510, 546, 630, 717
HpySE526I	ACGT	3 cut(s)	182, 234, 935
Hsp92II	CATG	3 cut(s)	262, 532, 652
HspAI	GCGC	3 cut(s)	149, 354, 813
KflI	GGGWCCC	1 cut(s)	684
Kzo9I	GATC	1 cut(s)	919
Lsp1109I	GCAGC	2 cut(s)	388, 397
LweI	GCATC	5 cut(s)	442, 475, 496, 616, 943
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	3 cut(s)	182, 234, 935
MaeIII	GTNAC	2 cut(s)	440, 1001
MalI	GATC	1 cut(s)	921
MbiI	CCGCTC	1 cut(s)	970
MboI	GATC	1 cut(s)	919
MboII	GAAGA	8 cut(s)	25, 34, 275, 355, 508, 529, 649, 938
MluCI	AATT	3 cut(s)	128, 169, 1015
MlyI	GAGTC	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	2 cut(s)	178, 939
MspR9I	CCNGG	2 cut(s)	103, 940
Mva1269I	GAATGC	2 cut(s)	436, 469
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	248, 356
NciI	CCSGG	1 cut(s)	940
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	919
NlaIII	CATG	3 cut(s)	262, 532, 652
NlaIV	GGNNCC	2 cut(s)	685, 686
NmuCI	GTSAC	1 cut(s)	1001
PctI	GAATGC	2 cut(s)	436, 469
PfeI	GAWTC	2 cut(s)	25, 164
PflMI	CCANNNNNTGG	1 cut(s)	694
PfoI	TCCNGGA	1 cut(s)	938
PkrI	GCNGC	5 cut(s)	358, 403, 412, 784, 982
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	685, 686
PspPI	GGNCC	1 cut(s)	684
PspPPI	RGGWCCY	1 cut(s)	684
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	3 cut(s)	108, 410, 791
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SatI	GCNGC	5 cut(s)	357, 402, 411, 783, 981
Sau3AI	GATC	1 cut(s)	919
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	103, 940
SfaNI	GCATC	5 cut(s)	442, 475, 496, 616, 943
SfcI	CTRYAG	3 cut(s)	402, 540, 660
SinI	GGWCC	1 cut(s)	684
Sse9I	AATT	3 cut(s)	128, 169, 1015
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	101, 938
StyI	CCWWGG	3 cut(s)	258, 597, 828
TaaI	ACNGT	4 cut(s)	541, 661, 793, 805
TaiI	ACGT	3 cut(s)	185, 237, 938
TaqI	TCGA	2 cut(s)	44, 142
TasI	AATT	3 cut(s)	128, 169, 1015
TauI	GCSGC	3 cut(s)	359, 785, 983
TfiI	GAWTC	2 cut(s)	25, 164
TseFI	GTSAC	1 cut(s)	1001
TseI	GCWGC	2 cut(s)	401, 410
Tsp45I	GTSAC	1 cut(s)	1001
TspDTI	ATGAA	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.