Rh5CG075500

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001595
Physical Location & Seq
Forward (+)
5669712 .. 5670821
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG075500.1

Sequence Viewer

Length: 609 bp
ATGGCAGCCAGCAATGTCATCTTCAACCTCTCAAGGTCCTCATTTCCTCAGTCCCCGGTTTCACAGTCCCTCAGTCCCTCTCTCAAAACCTCCAAGGTCTGCTTCAACTCCTCCTCCAACTTCTCCAAGGTTGGAAATGCGGCAGAGAACAGTAGGAACTCAAGTTTTAGCCGGGCGTATGACGACAAGGACTGGAGTACTAAAGCAAAGCAAACCCTGGAAGACGATGTCGAGGGTGGAAAGCAGCGCTTCGAGGAAATGAAGGGAGCAGCGACCGAGTACGCCAAAGACACGGTGGAGAACATCAAAGATGCGGCGGCGACTATAGGAGAGAAGGCCAAGGACGGGTCGGACAAGGTGGGGGAGTCCGCGGAGAGTACCATGGAGAAGGTAAAGAAGTATGCAGATGGTGCAACAGAGAAGACAAAAGATGCGGCGGAGACTATAACGGCCGAGGCCAAGGGGAACGCTAACAAGGCGGTGGACTCCACAGTGAGTGCCAAGGACAAGGCTTACGATGCGGCGGAGAGTGGGGCAGAGACGGTGAAAGATAAGGTGAACGAGGGGACGAGCAAGACGGCGGACGCGGTGAAGAATTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

202

Amino Acids

21.42

Weight (kDa)

5.48

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 371, 587
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 595
AfaI GTAC 3 cut(s) 199, 281, 379
AfeI AGCGCT 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 25, 106, 601
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
Alw26I GTCTC 2 cut(s) 434, 533
Aor51HI AGCGCT 1 cut(s) 248
AoxI GGCC 3 cut(s) 336, 450, 456
ApeKI GCWGC 3 cut(s) 5, 244, 269
ApoI RAATTY 1 cut(s) 595
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 2 cut(s) 56, 173
AsuHPI GGTGA 3 cut(s) 556, 568, 601
AvaII GGWCC 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 228, 428
BbvI GCAGC 3 cut(s) 17, 256, 281
BccI CCATC 1 cut(s) 401
BceAI ACGGC 2 cut(s) 465, 594
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 2 cut(s) 56, 173
BcoDI GTCTC 2 cut(s) 434, 533
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 250
BisI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 522
BlsI GCNGC 8 cut(s) 7, 142, 246, 271, 316, 319, 436, 523
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 56, 173, 218
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 56, 173, 218
BmsI GCATC 3 cut(s) 301, 421, 508
BpiI GAAGAC 2 cut(s) 228, 428
BpmI CTGGAG 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 16, 145
BpuMI CCSGG 2 cut(s) 56, 173
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 62, 85
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 100, 103
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 3 cut(s) 17, 256, 281
Bsh1236I CGCG 2 cut(s) 371, 587
Bsh1285I CGRYCG 2 cut(s) 276, 453
BshFI GGCC 3 cut(s) 338, 452, 458
BsiEI CGRYCG 2 cut(s) 276, 453
BsiSI CCGG 2 cut(s) 56, 172
BslFI GGGAC 4 cut(s) 37, 52, 60, 580
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 434, 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 4 cut(s) 37, 52, 60, 580
BsnI GGCC 3 cut(s) 338, 452, 458
Bsp19I CCATGG 1 cut(s) 381
BspANI GGCC 3 cut(s) 338, 452, 458
BspCNI CTCAG 2 cut(s) 61, 84
BspFNI CGCG 2 cut(s) 371, 587
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 197
BssT1I CCWWGG 6 cut(s) 93, 126, 339, 381, 459, 501
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 5 cut(s) 66, 152, 295, 493, 544
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 48, 71
BstDSI CCRYGG 2 cut(s) 369, 381
BstFNI CGCG 2 cut(s) 371, 587
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstMAI GTCTC 2 cut(s) 434, 533
BstMCI CGRYCG 2 cut(s) 276, 453
BstMWI GCNNNNNNNGC 3 cut(s) 410, 476, 518
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 3 cut(s) 54, 171, 216
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 2 cut(s) 371, 587
BstV1I GCAGC 3 cut(s) 17, 256, 281
BstV2I GAAGAC 2 cut(s) 228, 428
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 3 cut(s) 338, 452, 458
BtgI CCRYGG 2 cut(s) 369, 381
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 36
Cfr42I CCGCGG 1 cut(s) 372
CseI GACGC 1 cut(s) 593
Csp6I GTAC 3 cut(s) 198, 280, 378
CviAII CATG 1 cut(s) 382
CviJI RGCY 6 cut(s) 8, 171, 338, 452, 458, 512
CviKI_1 RGCY 6 cut(s) 8, 171, 338, 452, 458, 512
CviQI GTAC 3 cut(s) 198, 280, 378
DdeI CTNAG 2 cut(s) 48, 71
EaeI YGGCCR 1 cut(s) 450
EagI CGGCCG 1 cut(s) 450
EciI GGCGGA 3 cut(s) 452, 539, 596
EclXI CGGCCG 1 cut(s) 450
Eco130I CCWWGG 6 cut(s) 93, 126, 339, 381, 459, 501
Eco47I GGWCC 1 cut(s) 36
Eco47III AGCGCT 1 cut(s) 248
Eco52I CGGCCG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 6 cut(s) 93, 126, 339, 381, 459, 501
ErhI CCWWGG 6 cut(s) 93, 126, 339, 381, 459, 501
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 1 cut(s) 385
FaiI YATR 5 cut(s) 180, 326, 383, 402, 446
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 233, 265
FaqI GGGAC 4 cut(s) 37, 52, 60, 580
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 522
Fsp4HI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 522
GlaI GCGC 1 cut(s) 248
GluI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 522
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 3 cut(s) 338, 452, 458
HapII CCGG 2 cut(s) 56, 172
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 2 cut(s) 365, 485
HpaII CCGG 2 cut(s) 56, 172
HphI GGTGA 3 cut(s) 556, 568, 601
Hpy166II GTNNAC 2 cut(s) 484, 559
Hpy188I TCNGA 1 cut(s) 352
Hpy8I GTNNAC 2 cut(s) 484, 559
HpyAV CCTTC 3 cut(s) 256, 328, 382
HpyCH4III ACNGT 5 cut(s) 66, 152, 295, 493, 544
HpyCH4V TGCA 2 cut(s) 404, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 476, 518
HpyF3I CTNAG 2 cut(s) 48, 71
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 22, 69, 178, 185, 203, 230
Lsp1109I GCAGC 3 cut(s) 17, 256, 281
LweI GCATC 3 cut(s) 301, 421, 508
MboII GAAGA 4 cut(s) 13, 233, 433, 604
MluCI AATT 1 cut(s) 595
MlyI GAGTC 2 cut(s) 374, 479
MmeI TCCRAC 3 cut(s) 112, 141, 330
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 56, 172
MspR9I CCNGG 3 cut(s) 56, 173, 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 371, 587
MwoI GCNNNNNNNGC 3 cut(s) 410, 476, 518
NciI CCSGG 2 cut(s) 56, 173
NcoI CCATGG 1 cut(s) 381
NlaIII CATG 1 cut(s) 385
NmeAIII GCCGAG 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 8 cut(s) 7, 142, 246, 271, 316, 319, 436, 523
PleI GAGTC 2 cut(s) 373, 479
PpsI GAGTC 2 cut(s) 373, 479
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 3 cut(s) 199, 281, 379
RsaNI GTAC 3 cut(s) 198, 280, 378
SacII CCGCGG 1 cut(s) 372
SatI GCNGC 8 cut(s) 6, 141, 245, 270, 315, 318, 435, 522
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 2 cut(s) 374, 479
ScrFI CCNGG 3 cut(s) 56, 173, 218
SetI ASST 8 cut(s) 30, 38, 92, 99, 132, 360, 393, 558
SfaNI GCATC 3 cut(s) 301, 421, 508
SfcI CTRYAG 1 cut(s) 324
Sfr303I CCGCGG 1 cut(s) 372
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 31, 160
SmoI CTYRAG 2 cut(s) 31, 160
Sse9I AATT 1 cut(s) 595
StyD4I CCNGG 3 cut(s) 54, 171, 216
StyI CCWWGG 6 cut(s) 93, 126, 339, 381, 459, 501
TaaI ACNGT 5 cut(s) 66, 152, 295, 493, 544
TaqI TCGA 2 cut(s) 231, 252
TaqII GACCGA 1 cut(s) 290
TasI AATT 1 cut(s) 595
TatI WGTACW 1 cut(s) 197
TauI GCSGC 5 cut(s) 143, 317, 320, 437, 524
TscAI CASTG 1 cut(s) 498
TseI GCWGC 3 cut(s) 5, 244, 269
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 1 cut(s) 498
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.