AT4G21020

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001595
Physical Location & Seq
Forward (+)
11228187 .. 11229616
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21020.1

Sequence Viewer

Length: 801 bp
ATGGCGGCCATGCAACTAACAAGAACCGCTCTAGTTGGTCTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGGCTACTCTCGCTGCTTCTTCCCGGAAAGTCTCTCGCATCTGCTTCGCCACCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGATAACGCTAGAGACTCGAGGGCTGATTCAGCTTACGGATCGAAGAAATGGAGGGAGGACACCGGAGAATACTATGCCCAAGCGGCTAAAGACAAGGCTAACGAAGGAGCAAGCAAAGCTGCAGATAAAGCCTACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGAAAGCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCTAAGGATTATGCTGAACGGACTAAAGATAAGGTGAACGAAGGGGCGTATAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAAAGCAAAGGATTACGCAGAGGATACAATGGACAATGCAAAAGAGAAAGCTCGACATGCAAAAGAGAAGGTGAAAGAGTATGGAGAAGATACTAAGGAGAAGGCAGAAGGGTTTAAGGAGACTGTGAAAGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGGGAGAGTACTAAAAACGCTGCCCAAACCGTCACTGAAGCTGTGGTAGGGCCTGAAGAGGATGCGGAGAAGGCACGAGCTGATATGAATAAAGGCGTGGAAGATCACAGGAAGAAAAAAGCAGAGAAAGATCAAAAAGAGGACGATTTCATAACATTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.42

Weight (kDa)

7.61

Isoelectric Point (pI)

18.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Apolipoprotein PF01442 73 - 201 1.2e-07 Apolipoprotein A1/A4/E domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 6 cut(s) 5, 27, 239, 431, 440, 701
AclWI GGATC 2 cut(s) 143, 202
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 2 cut(s) 693, 711
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 1 cut(s) 139
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 8 cut(s) 68, 188, 275, 506, 593, 635, 677, 716
AluI AGCT 8 cut(s) 68, 188, 275, 506, 593, 635, 677, 716
Alw26I GTCTC 6 cut(s) 44, 106, 162, 287, 569, 614
AlwI GGATC 2 cut(s) 143, 202
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 2 cut(s) 6, 686
ApeKI GCWGC 4 cut(s) 83, 275, 428, 656
AspS9I GGNCC 1 cut(s) 686
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 418, 538, 637
AvaI CYCGRG 1 cut(s) 172
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 70, 262, 440, 643
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 2 cut(s) 340, 472
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 6 cut(s) 44, 106, 162, 287, 569, 614
BfaI CTAG 3 cut(s) 32, 155, 165
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 2 cut(s) 340, 472
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 6 cut(s) 6, 84, 240, 276, 429, 657
BlsI GCNGC 6 cut(s) 7, 85, 241, 277, 430, 658
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 2 cut(s) 57, 94
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 686
BmrFI CCNGG 2 cut(s) 57, 94
BmsI GCATC 2 cut(s) 117, 688
BpiI GAAGAC 1 cut(s) 617
Bpu10I CCTNAGC 2 cut(s) 375, 594
BpuMI CCSGG 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 55, 615
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 55, 615
BseGI GGATG 1 cut(s) 703
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 585
BseXI GCAGC 4 cut(s) 70, 262, 440, 643
BshFI GGCC 2 cut(s) 8, 688
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 3 cut(s) 71, 94, 219
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 6 cut(s) 44, 106, 162, 287, 569, 614
BsmBI CGTCTC 1 cut(s) 614
BsnI GGCC 2 cut(s) 8, 688
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 172
Bsp143I GATC 4 cut(s) 148, 194, 739, 766
BspACI CCGC 6 cut(s) 5, 27, 239, 431, 440, 701
BspANI GGCC 2 cut(s) 8, 688
BspCNI CTCAG 1 cut(s) 586
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 143, 202
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 55, 615
BssMI GATC 4 cut(s) 148, 194, 739, 766
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 580, 625, 667
Bst6I CTCTTC 2 cut(s) 139, 687
BstC8I GCNNGC 2 cut(s) 268, 306
BstDEI CTNAG 3 cut(s) 375, 549, 594
BstF5I GGATG 1 cut(s) 703
BstKTI GATC 4 cut(s) 151, 197, 742, 769
BstMAI GTCTC 6 cut(s) 44, 106, 162, 287, 569, 614
BstMBI GATC 4 cut(s) 148, 194, 739, 766
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 55, 92
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 4 cut(s) 70, 262, 440, 643
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuI GTATCC 2 cut(s) 340, 472
BsuRI GGCC 2 cut(s) 8, 688
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 2 cut(s) 268, 306
Cfr13I GGNCC 1 cut(s) 686
Csp6I GTAC 1 cut(s) 645
CviAII CATG 2 cut(s) 10, 512
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 3 cut(s) 375, 549, 594
DpnI GATC 4 cut(s) 150, 196, 741, 768
DpnII GATC 4 cut(s) 148, 194, 739, 766
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 139, 687
EarI CTCTTC 2 cut(s) 139, 687
Eco130I CCWWGG 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 693, 711
Eco88I CYCGRG 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 2 cut(s) 13, 515
FaiI YATR 8 cut(s) 11, 231, 384, 423, 513, 537, 722, 788
FatI CATG 2 cut(s) 9, 511
Fnu4HI GCNGC 6 cut(s) 6, 84, 240, 276, 429, 657
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 6 cut(s) 6, 84, 240, 276, 429, 657
FspBI CTAG 3 cut(s) 32, 155, 165
GluI GCNGC 6 cut(s) 6, 84, 240, 276, 429, 657
HaeIII GGCC 2 cut(s) 8, 688
HapII CCGG 3 cut(s) 71, 94, 219
Hin1II CATG 2 cut(s) 13, 515
HinfI GANTC 3 cut(s) 60, 170, 182
HpaII CCGG 3 cut(s) 71, 94, 219
HphI GGTGA 3 cut(s) 418, 538, 637
Hpy166II GTNNAC 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 7 cut(s) 254, 364, 407, 517, 550, 557, 700
HpyCH4III ACNGT 3 cut(s) 580, 625, 667
HpyCH4V TGCA 5 cut(s) 13, 278, 362, 494, 515
HpyF3I CTNAG 3 cut(s) 375, 549, 594
Hsp92II CATG 2 cut(s) 13, 515
Kzo9I GATC 4 cut(s) 148, 194, 739, 766
LmnI GCTCC 3 cut(s) 73, 263, 632
LpnPI CCDG 7 cut(s) 42, 69, 84, 107, 232, 702, 730
Lsp1109I GCAGC 4 cut(s) 70, 262, 440, 643
LweI GCATC 2 cut(s) 117, 688
MaeI CTAG 3 cut(s) 32, 155, 165
MaeIII GTNAC 1 cut(s) 667
MalI GATC 4 cut(s) 150, 196, 741, 768
MbiI CCGCTC 1 cut(s) 29
MboI GATC 4 cut(s) 148, 194, 739, 766
MboII GAAGA 9 cut(s) 81, 156, 211, 455, 554, 622, 704, 749, 760
MflI RGATCY 1 cut(s) 148
MlyI GAGTC 1 cut(s) 164
MseI TTAA 2 cut(s) 570, 795
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 3 cut(s) 71, 94, 219
MspR9I CCNGG 2 cut(s) 57, 94
MvaI CCWGG 1 cut(s) 57
NciI CCSGG 1 cut(s) 94
NdeII GATC 4 cut(s) 148, 194, 739, 766
NlaIII CATG 2 cut(s) 13, 515
NmuCI GTSAC 1 cut(s) 667
NspI RCATGY 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 2 cut(s) 60, 182
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 6 cut(s) 7, 85, 241, 277, 430, 658
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 686
PspXI VCTCGAGB 1 cut(s) 172
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
SaqAI TTAA 2 cut(s) 570, 795
SatI GCNGC 6 cut(s) 6, 84, 240, 276, 429, 657
Sau3AI GATC 4 cut(s) 148, 194, 739, 766
Sau96I GGNCC 1 cut(s) 686
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 57, 94
SfaNI GCATC 2 cut(s) 117, 688
SfcI CTRYAG 1 cut(s) 276
Sfr274I CTCGAG 1 cut(s) 172
SlaI CTCGAG 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SsiI CCGC 6 cut(s) 5, 27, 239, 431, 440, 701
SspMI CTAG 3 cut(s) 32, 155, 165
StyD4I CCNGG 2 cut(s) 55, 92
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 3 cut(s) 580, 625, 667
TaqI TCGA 3 cut(s) 173, 197, 508
TatI WGTACW 1 cut(s) 644
TauI GCSGC 2 cut(s) 8, 242
TfiI GAWTC 2 cut(s) 60, 182
Tru1I TTAA 2 cut(s) 570, 795
Tru9I TTAA 2 cut(s) 570, 795
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 4 cut(s) 83, 275, 428, 656
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 2 cut(s) 737, 775
TspGWI ACGGA 3 cut(s) 115, 207, 406
TspRI CASTG 1 cut(s) 676
XbaI TCTAGA 1 cut(s) 154
XceI RCATGY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 172
XspI CTAG 3 cut(s) 32, 155, 165
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.