Rh5DG262800

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
31543682 .. 31551826
8145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG262800.1

Sequence Viewer

Length: 1290 bp
ATGGAGAACTTCCGACAACCTTTCTTTCCTTCCACAACAACCACCATGACCTCCATTTATGAACCTATGAGTTCCTCCCCTTCAACTCTTGCTAGTTCATCCTCTCTGTCCTATCATTATCCAGCAGTTCAGTACCTACCACCACTCAATGGCGGCAGCCAGCTGTACTTTCAAAGCTCATACCCTAATTACCAGAAGCAGGCCTGTCAGCCCCCCTTCCAATATCCCAGGTATCCAGTCCTGCTTCCTAGGCCACAGCCAAATCCAGTCTCTGGAGATCAAGAAGGGATTGAGTCCAAGGCTGCAAGAGATGAGCAAAGGATGGCTCGCCAAAGAAGACTCTTTTTAAGCAGAAGCGCTGCTGACTCTGGGTCCTCATCAAGTTCAATGCAGATGGATTTATGTGGTGCTGATTCTGATATGCAGAACACAGACCTCTGCACGCCGGATATGAAGGAATTGAGAGTGTTGTTCAAGAAGGAGTTGAAGAAGAGTGATGTTGGATCCTGGGGCAGGATTGTCGTTCCAAAGAAAGAGGCAGAGAAATACCTTCCAAGCCTTGCTGAAAAACAAGGCATCGTGCTGAGGATCAGAGATGTACATTCCGGTCACGTGTGGGGCATGAAATACAAGTACTGGGCAAAAAACAAAAGTCGAATGTATGTCTTTGAAAGTGCAGGAAGCTTTATTAGGAAAAATGAACTGGAGGTGGGAGATTGCATTTCTCTTTACAAGGATGAGAACAAGAACTTTTACTTCTCCATAGAAAAGGCAGGAACAGGACCATCACATGTAACTGAGGCCTCGTATGAACAACAGCACTGTCCTACCAACTGTAAAGACGGTAACGATGATGACAACAGCAGTAGCATCAACACACAGATTACCAACTCTGACACCAACACCTACGTGAACTCCAGCAACAATGCTGACATCCACAGCGAAACCGATTCCAACAATACAAAATTGCACACACCATATACCTTCAATGAAGAAGATGAATGGTATCTAGCAGCACTGTTGGAAGATGAATCAAAAAAGGTCGTGACACTGTCTGCAGATCCTGTTTTTTCATGTGGACGACTTAAGGAAGTCAATAGCTCCATCGACAATGTCATCAATACTCAATTAGAAAGCTCTACTCAACCAGCTATGGCAGGAATTGGGGCCTCATCATCGTCCTCACAGAGCACAGTGAAGATGGTGGAGGATCACTTCGATGACTGTTACAAAGGGCTTGGGACGCTTCCGGCAGTTGATCGCTATGAGCATGATGATTTTTTGTTATAA

Protein Analysis

429

Amino Acids

48.08

Weight (kDa)

5.25

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 158 - 255 1.4e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1288
AccB7I CCANNNNNTGG 2 cut(s) 149, 272
AciI CCGC 1 cut(s) 153
AclWI GGATC 5 cut(s) 498, 511, 596, 1055, 1218
AcvI CACGTG 1 cut(s) 613
AfaI GTAC 4 cut(s) 134, 167, 600, 635
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 2 cut(s) 612, 790
AgsI TTSAA 7 cut(s) 84, 173, 387, 475, 487, 671, 988
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 227, 506
AleI CACNNNNGTG 1 cut(s) 908
AluBI AGCT 6 cut(s) 163, 177, 684, 1101, 1137, 1151
AluI AGCT 6 cut(s) 163, 177, 684, 1101, 1137, 1151
Alw21I GWGCWC 1 cut(s) 1193
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 5 cut(s) 498, 511, 596, 1055, 1218
AlwNI CAGNNNCTG 2 cut(s) 272, 1064
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 4 cut(s) 201, 251, 801, 1167
ApeKI GCWGC 4 cut(s) 156, 302, 359, 1013
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 3 cut(s) 372, 782, 1167
AvaII GGWCC 2 cut(s) 372, 782
AvrII CCTAGG 1 cut(s) 248
BamHI GGATCC 1 cut(s) 503
BbrPI CACGTG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 1193
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 4 cut(s) 168, 289, 346, 1025
BccI CCATC 5 cut(s) 316, 388, 793, 1112, 1195
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 2 cut(s) 229, 508
BciVI GTATCC 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 3 cut(s) 93, 249, 1010
BfmI CTRYAG 1 cut(s) 1056
BfoI RGCGCY 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 1085
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 5 cut(s) 154, 157, 303, 360, 1014
BlnI CCTAGG 1 cut(s) 248
BlsI GCNGC 5 cut(s) 155, 158, 304, 361, 1015
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 2 cut(s) 229, 508
Bme18I GGWCC 2 cut(s) 372, 782
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgT120I GGNCC 3 cut(s) 372, 782, 1167
BmiI GGNNCC 3 cut(s) 373, 505, 1168
BmrFI CCNGG 2 cut(s) 229, 508
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 2 cut(s) 585, 879
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 3 cut(s) 294, 725, 901
Bpu10I CCTNAGC 1 cut(s) 584
BsaAI YACGTR 2 cut(s) 613, 910
BsaJI CCNNGG 4 cut(s) 227, 248, 297, 507
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
Bse1I ACTGG 4 cut(s) 236, 266, 641, 708
BseBI CCWGG 2 cut(s) 229, 508
BseDI CCNNGG 4 cut(s) 227, 248, 297, 507
BseGI GGATG 4 cut(s) 98, 327, 742, 933
BseLI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
BseMII CTCAG 2 cut(s) 575, 789
BseNI ACTGG 4 cut(s) 236, 266, 641, 708
BseXI GCAGC 4 cut(s) 168, 289, 346, 1025
BsgI GTGCAG 2 cut(s) 424, 696
BshFI GGCC 4 cut(s) 203, 253, 803, 1169
BsiHKAI GWGCWC 1 cut(s) 1193
BsiSI CCGG 3 cut(s) 446, 606, 1250
BslFI GGGAC 1 cut(s) 1255
BslI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 1255
BsnI GGCC 4 cut(s) 203, 253, 803, 1169
Bsp1286I GDGCHC 1 cut(s) 1193
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
BspACI CCGC 1 cut(s) 153
BspANI GGCC 4 cut(s) 203, 253, 803, 1169
BspCNI CTCAG 2 cut(s) 576, 790
BspLI GGNNCC 3 cut(s) 373, 505, 1168
BspMAI CTGCAG 1 cut(s) 1060
BspPI GGATC 5 cut(s) 498, 511, 596, 1055, 1218
BspTI CTTAAG 1 cut(s) 1085
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 4 cut(s) 236, 266, 641, 708
BssECI CCNNGG 4 cut(s) 227, 248, 297, 507
BssMI GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
BssT1I CCWWGG 2 cut(s) 248, 297
Bst2UI CCWGG 2 cut(s) 229, 508
Bst4CI ACNGT 7 cut(s) 824, 836, 845, 1020, 1053, 1195, 1226
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 1085
BstAUI TGTACA 1 cut(s) 598
BstBAI YACGTR 2 cut(s) 613, 910
BstC8I GCNNGC 4 cut(s) 161, 201, 328, 443
BstDEI CTNAG 2 cut(s) 584, 798
BstENI CCTNNNNNAGG 1 cut(s) 511
BstF5I GGATG 4 cut(s) 98, 327, 742, 933
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 6 cut(s) 280, 506, 591, 1063, 1213, 1261
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
BstMWI GCNNNNNNNGC 2 cut(s) 250, 1243
BstNI CCWGG 2 cut(s) 229, 508
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 227, 506
BstSFI CTRYAG 1 cut(s) 1056
BstV1I GCAGC 4 cut(s) 168, 289, 346, 1025
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 2 cut(s) 503, 1060
BstYI RGATCY 2 cut(s) 503, 1060
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 4 cut(s) 203, 253, 803, 1169
BtsCI GGATG 4 cut(s) 98, 327, 742, 933
BtsIMutI CAGTG 4 cut(s) 820, 1016, 1049, 1200
Cac8I GCNNGC 4 cut(s) 161, 201, 328, 443
CaiI CAGNNNCTG 2 cut(s) 272, 1064
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 372, 782, 1167
CseI GACGC 1 cut(s) 1252
Csp6I GTAC 4 cut(s) 133, 166, 599, 634
CviAII CATG 5 cut(s) 46, 622, 791, 1074, 1271
CviQI GTAC 4 cut(s) 133, 166, 599, 634
DdeI CTNAG 2 cut(s) 584, 798
DpnI GATC 6 cut(s) 279, 505, 590, 1062, 1212, 1260
DpnII GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
DriI GACNNNNNGTC 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 485
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 2 cut(s) 248, 297
Eco147I AGGCCT 2 cut(s) 203, 803
Eco47I GGWCC 2 cut(s) 372, 782
Eco47III AGCGCT 1 cut(s) 358
Eco72I CACGTG 1 cut(s) 613
EcoNI CCTNNNNNAGG 1 cut(s) 511
EcoO109I RGGNCCY 2 cut(s) 372, 1167
EcoRII CCWGG 2 cut(s) 227, 506
EcoT14I CCWWGG 2 cut(s) 248, 297
ErhI CCWWGG 2 cut(s) 248, 297
FaeI CATG 5 cut(s) 49, 625, 794, 1077, 1274
FaqI GGGAC 1 cut(s) 1255
FatI CATG 5 cut(s) 45, 621, 790, 1073, 1270
Fnu4HI GCNGC 5 cut(s) 154, 157, 303, 360, 1014
FokI GGATG 4 cut(s) 85, 334, 749, 920
Fsp4HI GCNGC 5 cut(s) 154, 157, 303, 360, 1014
FspBI CTAG 3 cut(s) 93, 249, 1010
GlaI GCGC 1 cut(s) 358
GluI GCNGC 5 cut(s) 154, 157, 303, 360, 1014
GsuI CTGGAG 3 cut(s) 294, 725, 901
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 4 cut(s) 203, 253, 803, 1169
HapII CCGG 3 cut(s) 446, 606, 1250
HgaI GACGC 1 cut(s) 1252
HhaI GCGC 1 cut(s) 359
Hin1II CATG 5 cut(s) 49, 625, 794, 1077, 1274
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 6 cut(s) 293, 339, 365, 413, 950, 1031
HpaII CCGG 3 cut(s) 446, 606, 1250
Hpy166II GTNNAC 2 cut(s) 913, 1079
Hpy188I TCNGA 4 cut(s) 14, 418, 593, 895
Hpy188III TCNNGA 4 cut(s) 273, 281, 475, 1045
Hpy8I GTNNAC 2 cut(s) 913, 1079
HpyAV CCTTC 8 cut(s) 39, 90, 226, 278, 448, 472, 560, 994
HpyCH4III ACNGT 7 cut(s) 824, 836, 845, 1020, 1053, 1195, 1226
HpyCH4IV ACGT 2 cut(s) 612, 909
HpyCH4V TGCA 8 cut(s) 305, 391, 424, 441, 677, 720, 970, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 1243
HpyF3I CTNAG 2 cut(s) 584, 798
HpySE526I ACGT 2 cut(s) 612, 909
Hsp92II CATG 5 cut(s) 49, 625, 794, 1077, 1274
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
LmnI GCTCC 1 cut(s) 1106
Lsp1109I GCAGC 4 cut(s) 168, 289, 346, 1025
LweI GCATC 2 cut(s) 585, 879
MaeI CTAG 3 cut(s) 93, 249, 1010
MaeII ACGT 2 cut(s) 612, 909
MaeIII GTNAC 5 cut(s) 608, 793, 845, 1045, 1226
MalI GATC 6 cut(s) 279, 505, 590, 1062, 1212, 1260
MboI GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
MboII GAAGA 7 cut(s) 348, 499, 502, 1004, 1007, 1037, 1210
MflI RGATCY 2 cut(s) 503, 1060
MhlI GDGCHC 1 cut(s) 1193
MluCI AATT 5 cut(s) 187, 458, 965, 1127, 1161
MlyI GAGTC 3 cut(s) 302, 333, 359
MmeI TCCRAC 4 cut(s) 37, 481, 978, 1002
MseI TTAA 2 cut(s) 347, 1086
MslI CAYNNNNRTG 2 cut(s) 908, 1218
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 3 cut(s) 446, 606, 1250
MspR9I CCNGG 2 cut(s) 229, 508
MvaI CCWGG 2 cut(s) 229, 508
MwoI GCNNNNNNNGC 2 cut(s) 250, 1243
NdeII GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
NlaIII CATG 5 cut(s) 49, 625, 794, 1077, 1274
NlaIV GGNNCC 3 cut(s) 373, 505, 1168
NmuCI GTSAC 2 cut(s) 608, 1045
NspI RCATGY 1 cut(s) 794
OliI CACNNNNGTG 1 cut(s) 908
PceI AGGCCT 2 cut(s) 203, 803
PciI ACATGT 1 cut(s) 790
PfeI GAWTC 3 cut(s) 413, 950, 1031
PflFI GACNNNGTC 2 cut(s) 1051, 1112
PflMI CCANNNNNTGG 2 cut(s) 149, 272
PkrI GCNGC 5 cut(s) 155, 158, 304, 361, 1015
PleI GAGTC 3 cut(s) 301, 333, 359
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 3 cut(s) 301, 333, 359
Ppu21I YACGTR 2 cut(s) 613, 910
PpuMI RGGWCCY 1 cut(s) 372
PscI ACATGT 1 cut(s) 790
PsiI TTATAA 1 cut(s) 1288
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 227, 506
PspCI CACGTG 1 cut(s) 613
PspGI CCWGG 2 cut(s) 227, 506
PspN4I GGNNCC 3 cut(s) 373, 505, 1168
PspPI GGNCC 3 cut(s) 372, 782, 1167
PspPPI RGGWCCY 1 cut(s) 372
PstI CTGCAG 1 cut(s) 1060
PstNI CAGNNNCTG 2 cut(s) 272, 1064
PsuI RGATCY 2 cut(s) 503, 1060
PsyI GACNNNGTC 2 cut(s) 1051, 1112
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 4 cut(s) 134, 167, 600, 635
RsaNI GTAC 4 cut(s) 133, 166, 599, 634
RseI CAYNNNNRTG 2 cut(s) 908, 1218
SaqAI TTAA 2 cut(s) 347, 1086
SatI GCNGC 5 cut(s) 154, 157, 303, 360, 1014
Sau3AI GATC 6 cut(s) 277, 503, 588, 1060, 1210, 1258
Sau96I GGNCC 3 cut(s) 372, 782, 1167
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 3 cut(s) 302, 333, 359
ScrFI CCNGG 2 cut(s) 229, 508
SduI GDGCHC 1 cut(s) 1193
SfaNI GCATC 2 cut(s) 585, 879
SfcI CTRYAG 1 cut(s) 1056
SinI GGWCC 2 cut(s) 372, 782
SmiMI CAYNNNNRTG 2 cut(s) 908, 1218
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
Sse9I AATT 5 cut(s) 187, 458, 965, 1127, 1161
SseBI AGGCCT 2 cut(s) 203, 803
SsiI CCGC 1 cut(s) 153
SspMI CTAG 3 cut(s) 93, 249, 1010
StuI AGGCCT 2 cut(s) 203, 803
StyD4I CCNGG 2 cut(s) 227, 506
StyI CCWWGG 2 cut(s) 248, 297
TaaI ACNGT 7 cut(s) 824, 836, 845, 1020, 1053, 1195, 1226
TaiI ACGT 2 cut(s) 615, 912
TaqI TCGA 3 cut(s) 655, 1107, 1218
TasI AATT 5 cut(s) 187, 458, 965, 1127, 1161
TatI WGTACW 3 cut(s) 165, 598, 633
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 413, 950, 1031
Tru1I TTAA 2 cut(s) 347, 1086
Tru9I TTAA 2 cut(s) 347, 1086
TscAI CASTG 4 cut(s) 827, 1023, 1056, 1200
TseFI GTSAC 2 cut(s) 608, 1045
TseI GCWGC 4 cut(s) 156, 302, 359, 1013
Tsp45I GTSAC 2 cut(s) 608, 1045
TspRI CASTG 4 cut(s) 827, 1023, 1056, 1200
Tth111I GACNNNGTC 2 cut(s) 1051, 1112
Van91I CCANNNNNTGG 2 cut(s) 149, 272
Vha464I CTTAAG 1 cut(s) 1085
VpaK11BI GGWCC 2 cut(s) 372, 782
XagI CCTNNNNNAGG 1 cut(s) 511
XceI RCATGY 1 cut(s) 794
XmaJI CCTAGG 1 cut(s) 248
XspI CTAG 3 cut(s) 93, 249, 1010
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.