FvH4_3g08960

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
5238863 .. 5241663
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08960.t1

Sequence Viewer

Length: 279 bp
ATGAACTCAAGGATGGTACGCCAAAGAAGAAGCAACATTCTGAGAACAATAAAAGCTGCTTGTGCAACAGCTTCTTCTTCTTCTTCAAGGTTGGTTGTAGAGAGGGATCCATCTAGTGCTGGTTCTAAAACTCAGAATGAACAACACCTCTACCCATTCTCCATGCCGGATAACAAGAAATTGAAATTGTTGTTCAAAAAAGAGCTGAAGAATAGCGACGTTGGATCTTTGGGAAGGATTGTCCTTCCGAAGAGATACACCACAATACAGGAGGTATAA

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

10.58

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 101, 114, 232
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 3 cut(s) 87, 184, 196
AluBI AGCT 3 cut(s) 56, 71, 205
AluI AGCT 3 cut(s) 56, 71, 205
AlwI GGATC 3 cut(s) 101, 114, 232
ApeKI GCWGC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 7, 118
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 32, 146
BseXI GCAGC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 167
Bsp143I GATC 2 cut(s) 106, 224
BspCNI CTCAG 2 cut(s) 33, 145
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 3 cut(s) 101, 114, 232
BssMI GATC 2 cut(s) 106, 224
Bst6I CTCTTC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 41, 132
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 109, 227
BstMBI GATC 2 cut(s) 106, 224
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 106, 224
BstYI RGATCY 2 cut(s) 106, 224
BtsCI GGATG 1 cut(s) 18
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 163
CviJI RGCY 3 cut(s) 56, 71, 205
CviKI_1 RGCY 3 cut(s) 56, 71, 205
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 41, 132
DpnI GATC 2 cut(s) 108, 226
DpnII GATC 2 cut(s) 106, 224
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 227
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 164, 277
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 57
HapII CCGG 1 cut(s) 167
Hin1II CATG 1 cut(s) 166
HpaII CCGG 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 42, 135, 249
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 228, 254
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 41, 132
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 106, 224
LpnPI CCDG 3 cut(s) 105, 180, 254
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 219
MalI GATC 2 cut(s) 108, 226
MboI GATC 2 cut(s) 106, 224
MboII GAAGA 7 cut(s) 39, 66, 69, 72, 75, 220, 262
MflI RGATCY 2 cut(s) 106, 224
MluCI AATT 2 cut(s) 179, 185
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 3 cut(s) 96, 158, 265
MspI CCGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 106, 224
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 108
PsuI RGATCY 2 cut(s) 106, 224
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 106, 224
SetI ASST 7 cut(s) 58, 73, 92, 150, 207, 222, 276
SgeI CNNG 8 cut(s) 21, 72, 99, 126, 132, 175, 179, 187
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 179, 185
SspMI CTAG 1 cut(s) 114
TaiI ACGT 1 cut(s) 222
TasI AATT 2 cut(s) 179, 185
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 153
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.