Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001473.1

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

128682 .. 131112

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001473.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggagaacttccgcccacctttcacaccttcaacaactaccgctagctcttcttctccatcttcaactctggaaagttcatcatctcagttgtatcatgatccagtggtttgctacctaccacacccacattggcagcaaccaccatgtttttcatatcctcctcccatgcgtcctgatccaatcccaagttcggctgcgtgggaaacaaggatggcacgccaaagaagaggcaacattctgagaacaagaaaagctgctcgtgccgcggctgcttcttcaaggttggcagtagggaaggatccatctagtgctgtttctgaaaagccgaatgaacaatacatctactcattctgcacgccggataacaagttactcatgaagtgcactaatgtcatgttgatctgttgtttacctcctccacagaaagaggctgaaaaataccttccaagcctctccgacaaggaaggcatagagctgagaatcagggatgctctttcaacccaagagtggggtttgaaatacaagtactggtcaaataacaaaagccgaatgtatgtgcttgaaaacgcaggagacttcgttaggcaaactggagtggaggtgggagatagcattcatctttacgaagatgaatgcaagaatcttcagtacgtctccatccaccggcaggctcaagtaagaccagtccatgttgtcaagccctcctcaacctcatatcatcaacaaaactatacccataccaacaccaacaccaacaccgctaaaagagacaacaccaacaccgccatcgatcacaccaacagcaaaacccatgccaacacaacaagcatatacacgccatacgcctacaatgaaaccggaaccggtgaagttgagacttcttcagcggtagtattactacaacaacaacgcaatgaacaactagtagaaacaaacaacatggtgacattgtttacggatcctgcttcttcatatagacaaagtgaagaagctagcaacaccaacaacgacgtcactagacaacaacaaacctctactcaaccagctatggcagggatattcgggtcctcatcatcatcatcgtcctcaccgagtatgaagatggctgaggataactttggcgactgctatgaaggccttgggacgctcccggaagtagtcgatcgttttaatcattctcttttttattttgacgacataataacggacgacaagacgttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

408

Amino Acids

45.72

Weight (kDa)

6.02

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1017
AccII	CGCG	1 cut(s)	269
AciI	CCGC	7 cut(s)	13, 42, 267, 269, 762, 786, 890
AclWI	GGATC	6 cut(s)	95, 173, 296, 309, 956, 969
AcuI	CTGAAG	2 cut(s)	632, 870
AcyI	GRCGYC	1 cut(s)	1014
AfaI	GTAC	2 cut(s)	530, 653
AfiI	CCNNNNNNNGG	5 cut(s)	193, 510, 511, 666, 670
AgeI	ACCGGT	1 cut(s)	866
AgsI	TTSAA	6 cut(s)	33, 66, 282, 501, 520, 566
AhlI	ACTAGT	1 cut(s)	925
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	5 cut(s)	48, 257, 478, 995, 1049
AluI	AGCT	5 cut(s)	48, 257, 478, 995, 1049
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	4 cut(s)	570, 661, 765, 872
Alw44I	GTGCAC	1 cut(s)	385
AlwI	GGATC	6 cut(s)	95, 173, 296, 309, 956, 969
AoxI	GGCC	1 cut(s)	1138
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	4 cut(s)	136, 197, 257, 272
AsiGI	ACCGGT	1 cut(s)	866
AspS9I	GGNCC	1 cut(s)	1068
AsuC2I	CCSGG	1 cut(s)	1154
AsuHPI	GGTGA	3 cut(s)	881, 958, 1083
AsuNHI	GCTAGC	2 cut(s)	44, 995
AvaII	GGWCC	1 cut(s)	1068
BaeGI	GKGCMC	1 cut(s)	389
BamHI	GGATCC	2 cut(s)	301, 961
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	1110
BbvI	GCAGC	4 cut(s)	148, 184, 244, 259
BccI	CCATC	6 cut(s)	67, 208, 313, 668, 797, 1099
BcnI	CCSGG	1 cut(s)	1154
BcoDI	GTCTC	4 cut(s)	570, 661, 765, 872
BcuI	ACTAGT	1 cut(s)	925
BfaI	CTAG	5 cut(s)	45, 309, 926, 996, 1020
BisI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
BlsI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	1154
Bme18I	GGWCC	1 cut(s)	1068
BmgT120I	GGNCC	1 cut(s)	1068
BmiI	GGNNCC	4 cut(s)	303, 865, 963, 1069
BmrFI	CCNGG	1 cut(s)	1154
BmsI	GCATC	1 cut(s)	481
BmtI	GCTAGC	2 cut(s)	48, 999
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	1154
Bsa29I	ATCGAT	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	1014
BsaJI	CCNNGG	2 cut(s)	267, 1141
BsaWI	WCCGGW	2 cut(s)	860, 866
BsaXI	ACNNNNNCTCC	4 cut(s)	567, 588, 597, 618
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 510, 511, 666, 670
Bse118I	RCCGGY	2 cut(s)	666, 866
Bse1I	ACTGG	4 cut(s)	104, 536, 598, 686
Bse3DI	GCAATG	1 cut(s)	922
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	2 cut(s)	267, 1141
BseGI	GGATG	3 cut(s)	219, 496, 660
BseLI	CCNNNNNNNGG	5 cut(s)	193, 510, 511, 666, 670
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	4 cut(s)	101, 233, 470, 1101
BseNI	ACTGG	4 cut(s)	104, 536, 598, 686
BseRI	GAGGAG	3 cut(s)	153, 408, 697
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	148, 184, 244, 259
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	1168
BshFI	GGCC	1 cut(s)	1140
BshTI	ACCGGT	1 cut(s)	866
BshVI	ATCGAT	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	1168
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	5 cut(s)	362, 667, 861, 867, 1154
BslFI	GGGAC	1 cut(s)	1159
BslI	CCNNNNNNNGG	5 cut(s)	193, 510, 511, 666, 670
BsmAI	GTCTC	4 cut(s)	570, 661, 765, 872
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	1159
BsmI	GAATGC	2 cut(s)	615, 641
BsnI	GGCC	1 cut(s)	1140
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
BspACI	CCGC	7 cut(s)	13, 42, 267, 269, 762, 786, 890
BspANI	GGCC	1 cut(s)	1140
BspCNI	CTCAG	4 cut(s)	100, 234, 471, 1102
BspDI	ATCGAT	1 cut(s)	792
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	97, 378
BspLI	GGNNCC	4 cut(s)	303, 865, 963, 1069
BspOI	GCTAGC	2 cut(s)	48, 999
BspPI	GGATC	6 cut(s)	95, 173, 296, 309, 956, 969
BspQI	GCTCTTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	922
BsrFI	RCCGGY	2 cut(s)	666, 866
BsrI	ACTGG	4 cut(s)	104, 536, 598, 686
BssAI	RCCGGY	2 cut(s)	666, 866
BssECI	CCNNGG	2 cut(s)	267, 1141
BssMI	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
BssNI	GRCGYC	1 cut(s)	1014
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	1141
Bst2BI	CACGAG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	55, 223
BstACI	GRCGYC	1 cut(s)	1014
BstC8I	GCNNGC	5 cut(s)	46, 220, 359, 672, 997
BstDEI	CTNAG	4 cut(s)	87, 242, 479, 1110
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	219, 496, 660
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	7 cut(s)	103, 181, 304, 405, 796, 964, 1168
BstMAI	GTCTC	4 cut(s)	570, 661, 765, 872
BstMBI	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
BstMCI	CGRYCG	1 cut(s)	1168
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 266, 272, 1137
BstSCI	CCNGG	1 cut(s)	1152
BstSLI	GKGCMC	1 cut(s)	389
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	148, 184, 244, 259
BstX2I	RGATCY	2 cut(s)	301, 961
BstYI	RGATCY	2 cut(s)	301, 961
Bsu15I	ATCGAT	1 cut(s)	792
BsuRI	GGCC	1 cut(s)	1140
BsuTUI	ATCGAT	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	219, 496, 660
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	5 cut(s)	46, 220, 359, 672, 997
CciI	TCATGA	2 cut(s)	97, 378
Cfr10I	RCCGGY	2 cut(s)	666, 866
Cfr13I	GGNCC	1 cut(s)	1068
Cfr42I	CCGCGG	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	792
CseI	GACGC	2 cut(s)	161, 1156
Csp6I	GTAC	2 cut(s)	529, 652
CspAI	ACCGGT	1 cut(s)	866
CviAII	CATG	8 cut(s)	98, 147, 169, 379, 397, 692, 815, 943
CviQI	GTAC	2 cut(s)	529, 652
DdeI	CTNAG	4 cut(s)	87, 242, 479, 1110
DpnI	GATC	7 cut(s)	102, 180, 303, 404, 795, 963, 1167
DpnII	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
Eam1104I	CTCTTC	2 cut(s)	55, 223
EarI	CTCTTC	2 cut(s)	55, 223
Eco130I	CCWWGG	1 cut(s)	1141
Eco147I	AGGCCT	1 cut(s)	1140
Eco47I	GGWCC	1 cut(s)	1068
Eco57I	CTGAAG	2 cut(s)	632, 870
EcoO109I	RGGNCCY	1 cut(s)	1068
EcoT14I	CCWWGG	1 cut(s)	1141
ErhI	CCWWGG	1 cut(s)	1141
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	8 cut(s)	101, 150, 172, 382, 400, 695, 818, 946
FaqI	GGGAC	1 cut(s)	1159
FatI	CATG	8 cut(s)	97, 146, 168, 378, 396, 691, 814, 942
Fnu4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FokI	GGATG	3 cut(s)	226, 503, 647
Fsp4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FspBI	CTAG	5 cut(s)	45, 309, 926, 996, 1020
GluI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	1140
HapII	CCGG	5 cut(s)	362, 667, 861, 867, 1154
HgaI	GACGC	2 cut(s)	161, 1156
Hin1I	GRCGYC	1 cut(s)	1014
Hin1II	CATG	8 cut(s)	101, 150, 172, 382, 400, 695, 818, 946
HinfI	GANTC	2 cut(s)	483, 643
HpaII	CCGG	5 cut(s)	362, 667, 861, 867, 1154
HphI	GGTGA	3 cut(s)	881, 958, 1083
Hpy166II	GTNNAC	3 cut(s)	387, 413, 957
Hpy188I	TCNGA	3 cut(s)	243, 322, 460
Hpy188III	TCNNGA	4 cut(s)	71, 98, 176, 379
Hpy8I	GTNNAC	3 cut(s)	387, 413, 957
Hpy99I	CGWCG	1 cut(s)	1016
HpyAV	CCTTC	5 cut(s)	39, 292, 455, 461, 1130
HpyCH4IV	ACGT	3 cut(s)	654, 1014, 1220
HpyCH4V	TGCA	3 cut(s)	357, 387, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 266, 272, 1137
HpyF3I	CTNAG	4 cut(s)	87, 242, 479, 1110
HpySE526I	ACGT	3 cut(s)	654, 1014, 1220
Hsp92I	GRCGYC	1 cut(s)	1014
Hsp92II	CATG	8 cut(s)	101, 150, 172, 382, 400, 695, 818, 946
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	1155
Lsp1109I	GCAGC	4 cut(s)	148, 184, 244, 259
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	5 cut(s)	45, 309, 926, 996, 1020
MaeII	ACGT	3 cut(s)	654, 1014, 1220
MaeIII	GTNAC	3 cut(s)	372, 946, 1015
MalI	GATC	7 cut(s)	102, 180, 303, 404, 795, 963, 1167
MboI	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
MflI	RGATCY	2 cut(s)	301, 961
MhlI	GDGCHC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	483
MseI	TTAA	1 cut(s)	1173
MspA1I	CMGCKG	2 cut(s)	269, 890
MspI	CCGG	5 cut(s)	362, 667, 861, 867, 1154
MspR9I	CCNGG	1 cut(s)	1154
Mva1269I	GAATGC	2 cut(s)	615, 641
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	263, 266, 272, 1137
NciI	CCSGG	1 cut(s)	1154
NdeII	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
NheI	GCTAGC	2 cut(s)	44, 995
NlaIII	CATG	8 cut(s)	101, 150, 172, 382, 400, 695, 818, 946
NlaIV	GGNNCC	4 cut(s)	303, 865, 963, 1069
NmuCI	GTSAC	2 cut(s)	946, 1015
PagI	TCATGA	2 cut(s)	97, 378
PceI	AGGCCT	1 cut(s)	1140
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	1091
PctI	GAATGC	2 cut(s)	615, 641
PfeI	GAWTC	2 cut(s)	483, 643
PfoI	TCCNGGA	1 cut(s)	1152
PinAI	ACCGGT	1 cut(s)	866
PkrI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
Ple19I	CGATCG	1 cut(s)	1168
PpuMI	RGGWCCY	1 cut(s)	1068
Psp5II	RGGWCCY	1 cut(s)	1068
PspN4I	GGNNCC	4 cut(s)	303, 865, 963, 1069
PspPI	GGNCC	1 cut(s)	1068
PspPPI	RGGWCCY	1 cut(s)	1068
PsuI	RGATCY	2 cut(s)	301, 961
PvuI	CGATCG	1 cut(s)	1168
RsaI	GTAC	2 cut(s)	530, 653
RsaNI	GTAC	2 cut(s)	529, 652
SacII	CCGCGG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	1173
SatI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
Sau3AI	GATC	7 cut(s)	100, 178, 301, 402, 793, 961, 1165
Sau96I	GGNCC	1 cut(s)	1068
ScaI	AGTACT	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	1154
SduI	GDGCHC	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	481
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	1068
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
SpeI	ACTAGT	1 cut(s)	925
SseBI	AGGCCT	1 cut(s)	1140
SsiI	CCGC	7 cut(s)	13, 42, 267, 269, 762, 786, 890
SspMI	CTAG	5 cut(s)	45, 309, 926, 996, 1020
StuI	AGGCCT	1 cut(s)	1140
StyD4I	CCNGG	1 cut(s)	1152
StyI	CCWWGG	1 cut(s)	1141
TaiI	ACGT	3 cut(s)	657, 1017, 1223
TaqI	TCGA	2 cut(s)	792, 1164
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	2 cut(s)	269, 272
TfiI	GAWTC	2 cut(s)	483, 643
Tru1I	TTAA	1 cut(s)	1173
Tru9I	TTAA	1 cut(s)	1173
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	946, 1015
TseI	GCWGC	4 cut(s)	136, 197, 257, 272
Tsp45I	GTSAC	2 cut(s)	946, 1015
TspGWI	ACGGA	2 cut(s)	974, 1223
TspRI	CASTG	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	1068
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	5 cut(s)	45, 309, 926, 996, 1020
ZraI	GACGTC	1 cut(s)	1015
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.