Rh5DG061100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001669
Physical Location & Seq
Forward (+)
5205701 .. 5206680
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG061100.1

Sequence Viewer

Length: 273 bp
ATGAATGTAAGAGATTTTCATGCCATGGAGAATTTCTTTACTCATTCTGTGGTGAACTCTGGTGGACTCAAAGGAGTCTTGGGTTCATGCTTTGTGGTTGAACAAATGAGAAGCAAGAAGCAAGATGTGGCTTCAAACCATGGAGTGCTTCAAATCAAGACGGAAATGAAAGCACAGATTTCATTGAGTTCCTCAGGTTATGCTGCCCCTGTTTTTACTCACATTCCAAACATTAAAACAACCTTGTTTACTCACATCCCAAACATTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.9

Weight (kDa)

9.36

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 31
AgsI TTSAA 3 cut(s) 101, 135, 152
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 190
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 24, 139
Bse21I CCTNAGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 24, 139
BseGI GGATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 190
Bsp19I CCATGG 2 cut(s) 24, 139
BspCNI CTCAG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 24, 139
BssT1I CCWWGG 2 cut(s) 24, 139
BstDEI CTNAG 1 cut(s) 193
BstDSI CCRYGG 2 cut(s) 24, 139
BstF5I GGATG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 193
BtgI CCRYGG 2 cut(s) 24, 139
BtsCI GGATG 1 cut(s) 255
CviAII CATG 4 cut(s) 20, 25, 87, 140
CviJI RGCY 1 cut(s) 131
CviKI_1 RGCY 1 cut(s) 131
DdeI CTNAG 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 24, 139
Eco81I CCTNAGG 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 24, 139
ErhI CCWWGG 2 cut(s) 24, 139
FaeI CATG 4 cut(s) 23, 28, 90, 143
FaiI YATR 7 cut(s) 21, 26, 88, 141, 201, 269, 271
FatI CATG 4 cut(s) 19, 24, 86, 139
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
Hin1II CATG 4 cut(s) 23, 28, 90, 143
HinfI GANTC 2 cut(s) 66, 75
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 3 cut(s) 55, 65, 249
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 3 cut(s) 55, 65, 249
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 4 cut(s) 23, 28, 90, 143
LpnPI CCDG 3 cut(s) 45, 180, 222
Lsp1109I GCAGC 1 cut(s) 190
MluCI AATT 1 cut(s) 31
MlyI GAGTC 2 cut(s) 60, 84
MnlI CCTC 1 cut(s) 202
MseI TTAA 1 cut(s) 234
NcoI CCATGG 2 cut(s) 24, 139
NlaIII CATG 4 cut(s) 23, 28, 90, 143
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 2 cut(s) 60, 83
PpsI GAGTC 2 cut(s) 60, 83
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 204
SchI GAGTC 2 cut(s) 60, 84
SetI ASST 2 cut(s) 199, 245
Sse9I AATT 1 cut(s) 31
StyI CCWWGG 2 cut(s) 24, 139
TasI AATT 1 cut(s) 31
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 5 cut(s) 8, 17, 75, 171, 182
TspGWI ACGGA 1 cut(s) 176
XapI RAATTY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.