B3 domain-containing transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 158 - 256 | 4.9e-13 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1297 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 149, 272 |
| AciI | CCGC | 1 cut(s) | 153 |
| AclWI | GGATC | 5 cut(s) | 498, 511, 596, 1064, 1227 |
| AcoI | YGGCCR | 1 cut(s) | 251 |
| AcvI | CACGTG | 1 cut(s) | 613 |
| AfaI | GTAC | 5 cut(s) | 134, 167, 600, 635, 980 |
| AfeI | AGCGCT | 1 cut(s) | 358 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| AflII | CTTAAG | 1 cut(s) | 1094 |
| AflIII | ACRYGT | 2 cut(s) | 612, 790 |
| AgsI | TTSAA | 7 cut(s) | 84, 173, 387, 475, 487, 671, 997 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 370 |
| AjnI | CCWGG | 2 cut(s) | 227, 506 |
| AleI | CACNNNNGTG | 1 cut(s) | 917 |
| AluBI | AGCT | 6 cut(s) | 163, 177, 684, 1110, 1146, 1160 |
| AluI | AGCT | 6 cut(s) | 163, 177, 684, 1110, 1146, 1160 |
| Alw21I | GWGCWC | 1 cut(s) | 1202 |
| Alw26I | GTCTC | 1 cut(s) | 274 |
| AlwI | GGATC | 5 cut(s) | 498, 511, 596, 1064, 1227 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 272, 1073 |
| Aor51HI | AGCGCT | 1 cut(s) | 358 |
| AoxI | GGCC | 3 cut(s) | 201, 251, 1176 |
| ApeKI | GCWGC | 4 cut(s) | 156, 302, 359, 1022 |
| AspLEI | GCGC | 1 cut(s) | 359 |
| AspS9I | GGNCC | 3 cut(s) | 372, 782, 1176 |
| AsuHPI | GGTGA | 1 cut(s) | 1066 |
| AvaII | GGWCC | 2 cut(s) | 372, 782 |
| BamHI | GGATCC | 1 cut(s) | 503 |
| BbrPI | CACGTG | 1 cut(s) | 613 |
| BbsI | GAAGAC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 1 cut(s) | 1202 |
| BbvCI | CCTCAGC | 1 cut(s) | 584 |
| BbvI | GCAGC | 4 cut(s) | 168, 289, 346, 1034 |
| BccI | CCATC | 5 cut(s) | 316, 388, 793, 1121, 1204 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 502, 536 |
| BciT130I | CCWGG | 2 cut(s) | 229, 508 |
| BciVI | GTATCC | 1 cut(s) | 243 |
| BcoDI | GTCTC | 1 cut(s) | 274 |
| BfaI | CTAG | 2 cut(s) | 93, 1019 |
| BfmI | CTRYAG | 1 cut(s) | 1065 |
| BfoI | RGCGCY | 1 cut(s) | 360 |
| BfrI | CTTAAG | 1 cut(s) | 1094 |
| BfuI | GTATCC | 1 cut(s) | 243 |
| BisI | GCNGC | 5 cut(s) | 154, 157, 303, 360, 1023 |
| BlsI | GCNGC | 5 cut(s) | 155, 158, 304, 361, 1024 |
| BmcAI | AGTACT | 1 cut(s) | 635 |
| Bme1390I | CCNGG | 2 cut(s) | 229, 508 |
| Bme18I | GGWCC | 2 cut(s) | 372, 782 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 370 |
| BmgT120I | GGNCC | 3 cut(s) | 372, 782, 1176 |
| BmiI | GGNNCC | 3 cut(s) | 373, 505, 1177 |
| BmrFI | CCNGG | 2 cut(s) | 229, 508 |
| BmrI | ACTGGG | 1 cut(s) | 646 |
| BmsI | GCATC | 3 cut(s) | 585, 879, 925 |
| BmuI | ACTGGG | 1 cut(s) | 646 |
| BpiI | GAAGAC | 1 cut(s) | 343 |
| BpmI | CTGGAG | 3 cut(s) | 294, 725, 910 |
| Bpu10I | CCTNAGC | 1 cut(s) | 584 |
| BsaAI | YACGTR | 2 cut(s) | 613, 919 |
| BsaJI | CCNNGG | 4 cut(s) | 227, 248, 297, 507 |
| BsaWI | WCCGGW | 1 cut(s) | 605 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 908, 938 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| Bse1I | ACTGG | 4 cut(s) | 236, 266, 641, 708 |
| BseBI | CCWGG | 2 cut(s) | 229, 508 |
| BseDI | CCNNGG | 4 cut(s) | 227, 248, 297, 507 |
| BseGI | GGATG | 4 cut(s) | 98, 327, 742, 942 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| BseMII | CTCAG | 2 cut(s) | 221, 575 |
| BseNI | ACTGG | 4 cut(s) | 236, 266, 641, 708 |
| BseXI | GCAGC | 4 cut(s) | 168, 289, 346, 1034 |
| BsgI | GTGCAG | 2 cut(s) | 424, 696 |
| BshFI | GGCC | 3 cut(s) | 203, 253, 1178 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1202 |
| BsiSI | CCGG | 2 cut(s) | 446, 606 |
| BslFI | GGGAC | 1 cut(s) | 1264 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| BsmAI | GTCTC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 1 cut(s) | 1264 |
| BsnI | GGCC | 3 cut(s) | 203, 253, 1178 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1202 |
| Bsp1407I | TGTACA | 2 cut(s) | 598, 978 |
| Bsp143I | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| BspACI | CCGC | 1 cut(s) | 153 |
| BspANI | GGCC | 3 cut(s) | 203, 253, 1178 |
| BspCNI | CTCAG | 2 cut(s) | 220, 576 |
| BspLI | GGNNCC | 3 cut(s) | 373, 505, 1177 |
| BspMAI | CTGCAG | 1 cut(s) | 1069 |
| BspPI | GGATC | 5 cut(s) | 498, 511, 596, 1064, 1227 |
| BspTI | CTTAAG | 1 cut(s) | 1094 |
| BsrGI | TGTACA | 2 cut(s) | 598, 978 |
| BsrI | ACTGG | 4 cut(s) | 236, 266, 641, 708 |
| BssECI | CCNNGG | 4 cut(s) | 227, 248, 297, 507 |
| BssMI | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| BssT1I | CCWWGG | 1 cut(s) | 297 |
| Bst2UI | CCWGG | 2 cut(s) | 229, 508 |
| Bst4CI | ACNGT | 7 cut(s) | 824, 836, 845, 1029, 1062, 1204, 1235 |
| Bst6I | CTCTTC | 1 cut(s) | 485 |
| BstAFI | CTTAAG | 1 cut(s) | 1094 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1073 |
| BstAUI | TGTACA | 2 cut(s) | 598, 978 |
| BstBAI | YACGTR | 2 cut(s) | 613, 919 |
| BstC8I | GCNNGC | 4 cut(s) | 161, 201, 328, 443 |
| BstDEI | CTNAG | 2 cut(s) | 207, 584 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 511 |
| BstF5I | GGATG | 4 cut(s) | 98, 327, 742, 942 |
| BstH2I | RGCGCY | 1 cut(s) | 360 |
| BstHHI | GCGC | 1 cut(s) | 359 |
| BstKTI | GATC | 6 cut(s) | 280, 506, 591, 1072, 1222, 1270 |
| BstMAI | GTCTC | 1 cut(s) | 274 |
| BstMBI | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 250, 1073, 1252 |
| BstNI | CCWGG | 2 cut(s) | 229, 508 |
| BstNSI | RCATGY | 1 cut(s) | 794 |
| BstSCI | CCNGG | 2 cut(s) | 227, 506 |
| BstSFI | CTRYAG | 1 cut(s) | 1065 |
| BstV1I | GCAGC | 4 cut(s) | 168, 289, 346, 1034 |
| BstV2I | GAAGAC | 1 cut(s) | 343 |
| BstX2I | RGATCY | 2 cut(s) | 503, 1069 |
| BstYI | RGATCY | 2 cut(s) | 503, 1069 |
| BsuI | GTATCC | 1 cut(s) | 243 |
| BsuRI | GGCC | 3 cut(s) | 203, 253, 1178 |
| BtsCI | GGATG | 4 cut(s) | 98, 327, 742, 942 |
| BtsIMutI | CAGTG | 4 cut(s) | 820, 1025, 1058, 1209 |
| Cac8I | GCNNGC | 4 cut(s) | 161, 201, 328, 443 |
| CaiI | CAGNNNCTG | 2 cut(s) | 272, 1073 |
| CfoI | GCGC | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 3 cut(s) | 372, 782, 1176 |
| CseI | GACGC | 1 cut(s) | 1261 |
| Csp6I | GTAC | 5 cut(s) | 133, 166, 599, 634, 979 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1032, 1067 |
| CviAII | CATG | 5 cut(s) | 46, 622, 791, 1083, 1280 |
| CviQI | GTAC | 5 cut(s) | 133, 166, 599, 634, 979 |
| DdeI | CTNAG | 2 cut(s) | 207, 584 |
| DpnI | GATC | 6 cut(s) | 279, 505, 590, 1071, 1221, 1269 |
| DpnII | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| DriI | GACNNNNNGTC | 1 cut(s) | 370 |
| EaeI | YGGCCR | 1 cut(s) | 251 |
| Eam1104I | CTCTTC | 1 cut(s) | 485 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 370 |
| EarI | CTCTTC | 1 cut(s) | 485 |
| Eco130I | CCWWGG | 1 cut(s) | 297 |
| Eco147I | AGGCCT | 1 cut(s) | 203 |
| Eco47I | GGWCC | 2 cut(s) | 372, 782 |
| Eco47III | AGCGCT | 1 cut(s) | 358 |
| Eco72I | CACGTG | 1 cut(s) | 613 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 511 |
| EcoO109I | RGGNCCY | 2 cut(s) | 372, 1176 |
| EcoRII | CCWGG | 2 cut(s) | 227, 506 |
| EcoT14I | CCWWGG | 1 cut(s) | 297 |
| ErhI | CCWWGG | 1 cut(s) | 297 |
| FaeI | CATG | 5 cut(s) | 49, 625, 794, 1086, 1283 |
| FaqI | GGGAC | 1 cut(s) | 1264 |
| FatI | CATG | 5 cut(s) | 45, 621, 790, 1082, 1279 |
| Fnu4HI | GCNGC | 5 cut(s) | 154, 157, 303, 360, 1023 |
| FokI | GGATG | 4 cut(s) | 85, 334, 749, 929 |
| Fsp4HI | GCNGC | 5 cut(s) | 154, 157, 303, 360, 1023 |
| FspBI | CTAG | 2 cut(s) | 93, 1019 |
| GlaI | GCGC | 1 cut(s) | 358 |
| GluI | GCNGC | 5 cut(s) | 154, 157, 303, 360, 1023 |
| GsuI | CTGGAG | 3 cut(s) | 294, 725, 910 |
| HaeII | RGCGCY | 1 cut(s) | 360 |
| HaeIII | GGCC | 3 cut(s) | 203, 253, 1178 |
| HapII | CCGG | 2 cut(s) | 446, 606 |
| HgaI | GACGC | 1 cut(s) | 1261 |
| HhaI | GCGC | 1 cut(s) | 359 |
| Hin1II | CATG | 5 cut(s) | 49, 625, 794, 1086, 1283 |
| Hin6I | GCGC | 1 cut(s) | 357 |
| HinP1I | GCGC | 1 cut(s) | 357 |
| HindIII | AAGCTT | 1 cut(s) | 682 |
| HinfI | GANTC | 6 cut(s) | 293, 365, 413, 800, 959, 1040 |
| HpaII | CCGG | 2 cut(s) | 446, 606 |
| HphI | GGTGA | 1 cut(s) | 1066 |
| Hpy166II | GTNNAC | 3 cut(s) | 922, 981, 1088 |
| Hpy188I | TCNGA | 4 cut(s) | 14, 418, 593, 895 |
| Hpy188III | TCNNGA | 3 cut(s) | 273, 281, 475 |
| Hpy8I | GTNNAC | 3 cut(s) | 922, 981, 1088 |
| Hpy99I | CGWCG | 1 cut(s) | 854 |
| HpyAV | CCTTC | 9 cut(s) | 31, 39, 90, 226, 278, 448, 472, 560, 1003 |
| HpyCH4III | ACNGT | 7 cut(s) | 824, 836, 845, 1029, 1062, 1204, 1235 |
| HpyCH4IV | ACGT | 2 cut(s) | 612, 918 |
| HpyCH4V | TGCA | 7 cut(s) | 305, 391, 424, 441, 677, 720, 1067 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 250, 1073, 1252 |
| HpyF3I | CTNAG | 2 cut(s) | 207, 584 |
| HpySE526I | ACGT | 2 cut(s) | 612, 918 |
| Hsp92II | CATG | 5 cut(s) | 49, 625, 794, 1086, 1283 |
| HspAI | GCGC | 1 cut(s) | 357 |
| Kzo9I | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| LmnI | GCTCC | 1 cut(s) | 1115 |
| Lsp1109I | GCAGC | 4 cut(s) | 168, 289, 346, 1034 |
| LweI | GCATC | 3 cut(s) | 585, 879, 925 |
| MaeI | CTAG | 2 cut(s) | 93, 1019 |
| MaeII | ACGT | 2 cut(s) | 612, 918 |
| MaeIII | GTNAC | 5 cut(s) | 608, 793, 845, 1054, 1235 |
| MalI | GATC | 6 cut(s) | 279, 505, 590, 1071, 1221, 1269 |
| MboI | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| MboII | GAAGA | 7 cut(s) | 348, 499, 502, 1013, 1016, 1046, 1219 |
| MflI | RGATCY | 2 cut(s) | 503, 1069 |
| MhlI | GDGCHC | 1 cut(s) | 1202 |
| MluCI | AATT | 5 cut(s) | 187, 458, 974, 1136, 1170 |
| MlyI | GAGTC | 2 cut(s) | 302, 359 |
| MmeI | TCCRAC | 4 cut(s) | 37, 481, 987, 1011 |
| MseI | TTAA | 3 cut(s) | 347, 1095, 1104 |
| MslI | CAYNNNNRTG | 2 cut(s) | 917, 1227 |
| MspA1I | CMGCKG | 1 cut(s) | 163 |
| MspCI | CTTAAG | 1 cut(s) | 1094 |
| MspI | CCGG | 2 cut(s) | 446, 606 |
| MspR9I | CCNGG | 2 cut(s) | 229, 508 |
| MvaI | CCWGG | 2 cut(s) | 229, 508 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 250, 1073, 1252 |
| NdeII | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| NlaIII | CATG | 5 cut(s) | 49, 625, 794, 1086, 1283 |
| NlaIV | GGNNCC | 3 cut(s) | 373, 505, 1177 |
| NmeAIII | GCCGAG | 1 cut(s) | 229 |
| NmuCI | GTSAC | 2 cut(s) | 608, 1054 |
| NspI | RCATGY | 1 cut(s) | 794 |
| OliI | CACNNNNGTG | 1 cut(s) | 917 |
| PceI | AGGCCT | 1 cut(s) | 203 |
| PciI | ACATGT | 1 cut(s) | 790 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 849 |
| PfeI | GAWTC | 4 cut(s) | 413, 800, 959, 1040 |
| PflFI | GACNNNGTC | 2 cut(s) | 1060, 1121 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 149, 272 |
| PkrI | GCNGC | 5 cut(s) | 155, 158, 304, 361, 1024 |
| PleI | GAGTC | 2 cut(s) | 301, 359 |
| PmaCI | CACGTG | 1 cut(s) | 613 |
| PmlI | CACGTG | 1 cut(s) | 613 |
| PpsI | GAGTC | 2 cut(s) | 301, 359 |
| Ppu21I | YACGTR | 2 cut(s) | 613, 919 |
| PpuMI | RGGWCCY | 1 cut(s) | 372 |
| PscI | ACATGT | 1 cut(s) | 790 |
| PsiI | TTATAA | 1 cut(s) | 1297 |
| Psp5II | RGGWCCY | 1 cut(s) | 372 |
| Psp6I | CCWGG | 2 cut(s) | 227, 506 |
| PspCI | CACGTG | 1 cut(s) | 613 |
| PspGI | CCWGG | 2 cut(s) | 227, 506 |
| PspN4I | GGNNCC | 3 cut(s) | 373, 505, 1177 |
| PspPI | GGNCC | 3 cut(s) | 372, 782, 1176 |
| PspPPI | RGGWCCY | 1 cut(s) | 372 |
| PstI | CTGCAG | 1 cut(s) | 1069 |
| PstNI | CAGNNNCTG | 2 cut(s) | 272, 1073 |
| PsuI | RGATCY | 2 cut(s) | 503, 1069 |
| PsyI | GACNNNGTC | 2 cut(s) | 1060, 1121 |
| PvuII | CAGCTG | 1 cut(s) | 163 |
| RsaI | GTAC | 5 cut(s) | 134, 167, 600, 635, 980 |
| RsaNI | GTAC | 5 cut(s) | 133, 166, 599, 634, 979 |
| RseI | CAYNNNNRTG | 2 cut(s) | 917, 1227 |
| SaqAI | TTAA | 3 cut(s) | 347, 1095, 1104 |
| SatI | GCNGC | 5 cut(s) | 154, 157, 303, 360, 1023 |
| Sau3AI | GATC | 6 cut(s) | 277, 503, 588, 1069, 1219, 1267 |
| Sau96I | GGNCC | 3 cut(s) | 372, 782, 1176 |
| ScaI | AGTACT | 1 cut(s) | 635 |
| SchI | GAGTC | 2 cut(s) | 302, 359 |
| ScrFI | CCNGG | 2 cut(s) | 229, 508 |
| SduI | GDGCHC | 1 cut(s) | 1202 |
| SfaNI | GCATC | 3 cut(s) | 585, 879, 925 |
| SfcI | CTRYAG | 1 cut(s) | 1065 |
| SinI | GGWCC | 2 cut(s) | 372, 782 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 917, 1227 |
| SmlI | CTYRAG | 1 cut(s) | 1094 |
| SmoI | CTYRAG | 1 cut(s) | 1094 |
| Sse9I | AATT | 5 cut(s) | 187, 458, 974, 1136, 1170 |
| SseBI | AGGCCT | 1 cut(s) | 203 |
| SsiI | CCGC | 1 cut(s) | 153 |
| SspMI | CTAG | 2 cut(s) | 93, 1019 |
| StuI | AGGCCT | 1 cut(s) | 203 |
| StyD4I | CCNGG | 2 cut(s) | 227, 506 |
| StyI | CCWWGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 7 cut(s) | 824, 836, 845, 1029, 1062, 1204, 1235 |
| TaiI | ACGT | 2 cut(s) | 615, 921 |
| TaqI | TCGA | 3 cut(s) | 655, 1116, 1227 |
| TasI | AATT | 5 cut(s) | 187, 458, 974, 1136, 1170 |
| TatI | WGTACW | 4 cut(s) | 165, 598, 633, 978 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TfiI | GAWTC | 4 cut(s) | 413, 800, 959, 1040 |
| Tru1I | TTAA | 3 cut(s) | 347, 1095, 1104 |
| Tru9I | TTAA | 3 cut(s) | 347, 1095, 1104 |
| TscAI | CASTG | 4 cut(s) | 827, 1032, 1065, 1209 |
| TseFI | GTSAC | 2 cut(s) | 608, 1054 |
| TseI | GCWGC | 4 cut(s) | 156, 302, 359, 1022 |
| Tsp45I | GTSAC | 2 cut(s) | 608, 1054 |
| TspDTI | ATGAA | 9 cut(s) | 75, 87, 467, 638, 825, 1014, 1023, 1053, 1071 |
| TspRI | CASTG | 4 cut(s) | 827, 1032, 1065, 1209 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1060, 1121 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 149, 272 |
| Vha464I | CTTAAG | 1 cut(s) | 1094 |
| VpaK11BI | GGWCC | 2 cut(s) | 372, 782 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 511 |
| XceI | RCATGY | 1 cut(s) | 794 |
| XspI | CTAG | 2 cut(s) | 93, 1019 |
| ZrmI | AGTACT | 1 cut(s) | 635 |