Rh5AG252600

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
32441972 .. 32445045
3074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG252600.1

Sequence Viewer

Length: 1299 bp
ATGGAGAACTTCCGACAACCCTTCTTTCCTTCCACAACAACCACCATGACCTCCATTTATGAACCTATGAGTTCCTCCCCTTCAACTCTTGCTAGTTCATCCTCTCTGTCCTATCATTATCCAGCAGTTCAGTACCTACCACCACTCAATGGCGGCAGCCAGCTGTACTTTCAAAGCTCATACCCTAATTACCAGAAGCAGGCCTCTCAGCCCCCCTTCCAATATCCCAGGTATCCAGTCCTGCTTCCTCGGCCACAGCCAAATCCAGTCTCTGGAGATCAAGAAGGGATTGAGTCCAAGGCTGCAAGAGATGAGCAAAGGATGGCTCGCCAAAGAAGACACTTTTTAAGCAGAAGCGCTGCTGACTCTGGGTCCTCATCAAGTTCAATGCAGATGGATTTATGTGGTGCTGATTCTGATATGCAGAACACAGACCTCTGCACGCCGGATATGAAGGAATTGAGAGTGTTGTTCAAGAAGGAGTTGAAGAAGAGTGATGTTGGATCCTGGGGCAGGATTGTCGTTCCAAAGAAAGAGGCAGAGAAATACCTTCCAAGCCTTGCTGAAAAACAAGGCATCGTGCTGAGGATCAGAGATGTACATTCCGGTCACGTGTGGGGCATGAAATACAAGTACTGGGCAAATAACAAAAGTCGAATGTATGTCTTTGAAAGTGCAGGAAGCTTTATTAGGAAAAATGGACTGGAGGTGGGAGATTGCATTTCTCTTTACAAGGATGAGAGCAAGAACTTTTACTTCTCCATAGAAAAGGCAGGAACAGGACCATCACATGTAACTGAATCCTCGTATGAACAACAGCACTGTGCTACCAACTGTAAAGACGGTAACGACGATGACAACAGCAGTAGCATCAACACACAGATTACCAACTCTGACGATAACAACACCAACACCTACGTGAACTCCAGCAACGATGCTGACATCCACAGCGAAACCGATTCCAACAATACAAAATTGTACACACCATATACCTTCAATGAAGAAGATGAATGGTATCTAGCAGCACTGTTGGAAGATGAATCAAACAAGGTGGTGACACTGTCTGCAGATCCTGCTTTTTCATGTGGACGACTTAAGGAAGTTAATAGCTCCATCGACAATGTCATCAATACTCAATTAGAAAGCTCTACTCAACCAGCTATGGCAGGAATTGGGGCCTCATCATCGTCCTCACAGAGCACAGTGAAGATGGTGGAGGATCACTTCGATGACTGTTACAAAGGGCTTGGGACGCTTCGGGCAGTTGATCGCTATGAGCATGATGATTTTTTGTTATAA

Protein Analysis

432

Amino Acids

48.35

Weight (kDa)

5.12

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 158 - 256 4.9e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1297
AccB7I CCANNNNNTGG 2 cut(s) 149, 272
AciI CCGC 1 cut(s) 153
AclWI GGATC 5 cut(s) 498, 511, 596, 1064, 1227
AcoI YGGCCR 1 cut(s) 251
AcvI CACGTG 1 cut(s) 613
AfaI GTAC 5 cut(s) 134, 167, 600, 635, 980
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
AflII CTTAAG 1 cut(s) 1094
AflIII ACRYGT 2 cut(s) 612, 790
AgsI TTSAA 7 cut(s) 84, 173, 387, 475, 487, 671, 997
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 227, 506
AleI CACNNNNGTG 1 cut(s) 917
AluBI AGCT 6 cut(s) 163, 177, 684, 1110, 1146, 1160
AluI AGCT 6 cut(s) 163, 177, 684, 1110, 1146, 1160
Alw21I GWGCWC 1 cut(s) 1202
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 5 cut(s) 498, 511, 596, 1064, 1227
AlwNI CAGNNNCTG 2 cut(s) 272, 1073
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 3 cut(s) 201, 251, 1176
ApeKI GCWGC 4 cut(s) 156, 302, 359, 1022
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 3 cut(s) 372, 782, 1176
AsuHPI GGTGA 1 cut(s) 1066
AvaII GGWCC 2 cut(s) 372, 782
BamHI GGATCC 1 cut(s) 503
BbrPI CACGTG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 1202
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 4 cut(s) 168, 289, 346, 1034
BccI CCATC 5 cut(s) 316, 388, 793, 1121, 1204
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 2 cut(s) 229, 508
BciVI GTATCC 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 93, 1019
BfmI CTRYAG 1 cut(s) 1065
BfoI RGCGCY 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 1094
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 5 cut(s) 154, 157, 303, 360, 1023
BlsI GCNGC 5 cut(s) 155, 158, 304, 361, 1024
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 2 cut(s) 229, 508
Bme18I GGWCC 2 cut(s) 372, 782
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgT120I GGNCC 3 cut(s) 372, 782, 1176
BmiI GGNNCC 3 cut(s) 373, 505, 1177
BmrFI CCNGG 2 cut(s) 229, 508
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 3 cut(s) 585, 879, 925
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 3 cut(s) 294, 725, 910
Bpu10I CCTNAGC 1 cut(s) 584
BsaAI YACGTR 2 cut(s) 613, 919
BsaJI CCNNGG 4 cut(s) 227, 248, 297, 507
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
Bse1I ACTGG 4 cut(s) 236, 266, 641, 708
BseBI CCWGG 2 cut(s) 229, 508
BseDI CCNNGG 4 cut(s) 227, 248, 297, 507
BseGI GGATG 4 cut(s) 98, 327, 742, 942
BseLI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
BseMII CTCAG 2 cut(s) 221, 575
BseNI ACTGG 4 cut(s) 236, 266, 641, 708
BseXI GCAGC 4 cut(s) 168, 289, 346, 1034
BsgI GTGCAG 2 cut(s) 424, 696
BshFI GGCC 3 cut(s) 203, 253, 1178
BsiHKAI GWGCWC 1 cut(s) 1202
BsiSI CCGG 2 cut(s) 446, 606
BslFI GGGAC 1 cut(s) 1264
BslI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 1264
BsnI GGCC 3 cut(s) 203, 253, 1178
Bsp1286I GDGCHC 1 cut(s) 1202
Bsp1407I TGTACA 2 cut(s) 598, 978
Bsp143I GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
BspACI CCGC 1 cut(s) 153
BspANI GGCC 3 cut(s) 203, 253, 1178
BspCNI CTCAG 2 cut(s) 220, 576
BspLI GGNNCC 3 cut(s) 373, 505, 1177
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 5 cut(s) 498, 511, 596, 1064, 1227
BspTI CTTAAG 1 cut(s) 1094
BsrGI TGTACA 2 cut(s) 598, 978
BsrI ACTGG 4 cut(s) 236, 266, 641, 708
BssECI CCNNGG 4 cut(s) 227, 248, 297, 507
BssMI GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 229, 508
Bst4CI ACNGT 7 cut(s) 824, 836, 845, 1029, 1062, 1204, 1235
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 1094
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstAUI TGTACA 2 cut(s) 598, 978
BstBAI YACGTR 2 cut(s) 613, 919
BstC8I GCNNGC 4 cut(s) 161, 201, 328, 443
BstDEI CTNAG 2 cut(s) 207, 584
BstENI CCTNNNNNAGG 1 cut(s) 511
BstF5I GGATG 4 cut(s) 98, 327, 742, 942
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 6 cut(s) 280, 506, 591, 1072, 1222, 1270
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
BstMWI GCNNNNNNNGC 3 cut(s) 250, 1073, 1252
BstNI CCWGG 2 cut(s) 229, 508
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 227, 506
BstSFI CTRYAG 1 cut(s) 1065
BstV1I GCAGC 4 cut(s) 168, 289, 346, 1034
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 2 cut(s) 503, 1069
BstYI RGATCY 2 cut(s) 503, 1069
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 3 cut(s) 203, 253, 1178
BtsCI GGATG 4 cut(s) 98, 327, 742, 942
BtsIMutI CAGTG 4 cut(s) 820, 1025, 1058, 1209
Cac8I GCNNGC 4 cut(s) 161, 201, 328, 443
CaiI CAGNNNCTG 2 cut(s) 272, 1073
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 372, 782, 1176
CseI GACGC 1 cut(s) 1261
Csp6I GTAC 5 cut(s) 133, 166, 599, 634, 979
CspCI CAANNNNNGTGG 2 cut(s) 1032, 1067
CviAII CATG 5 cut(s) 46, 622, 791, 1083, 1280
CviQI GTAC 5 cut(s) 133, 166, 599, 634, 979
DdeI CTNAG 2 cut(s) 207, 584
DpnI GATC 6 cut(s) 279, 505, 590, 1071, 1221, 1269
DpnII GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
DriI GACNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 485
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 372, 782
Eco47III AGCGCT 1 cut(s) 358
Eco72I CACGTG 1 cut(s) 613
EcoNI CCTNNNNNAGG 1 cut(s) 511
EcoO109I RGGNCCY 2 cut(s) 372, 1176
EcoRII CCWGG 2 cut(s) 227, 506
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 5 cut(s) 49, 625, 794, 1086, 1283
FaqI GGGAC 1 cut(s) 1264
FatI CATG 5 cut(s) 45, 621, 790, 1082, 1279
Fnu4HI GCNGC 5 cut(s) 154, 157, 303, 360, 1023
FokI GGATG 4 cut(s) 85, 334, 749, 929
Fsp4HI GCNGC 5 cut(s) 154, 157, 303, 360, 1023
FspBI CTAG 2 cut(s) 93, 1019
GlaI GCGC 1 cut(s) 358
GluI GCNGC 5 cut(s) 154, 157, 303, 360, 1023
GsuI CTGGAG 3 cut(s) 294, 725, 910
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 3 cut(s) 203, 253, 1178
HapII CCGG 2 cut(s) 446, 606
HgaI GACGC 1 cut(s) 1261
HhaI GCGC 1 cut(s) 359
Hin1II CATG 5 cut(s) 49, 625, 794, 1086, 1283
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 6 cut(s) 293, 365, 413, 800, 959, 1040
HpaII CCGG 2 cut(s) 446, 606
HphI GGTGA 1 cut(s) 1066
Hpy166II GTNNAC 3 cut(s) 922, 981, 1088
Hpy188I TCNGA 4 cut(s) 14, 418, 593, 895
Hpy188III TCNNGA 3 cut(s) 273, 281, 475
Hpy8I GTNNAC 3 cut(s) 922, 981, 1088
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 9 cut(s) 31, 39, 90, 226, 278, 448, 472, 560, 1003
HpyCH4III ACNGT 7 cut(s) 824, 836, 845, 1029, 1062, 1204, 1235
HpyCH4IV ACGT 2 cut(s) 612, 918
HpyCH4V TGCA 7 cut(s) 305, 391, 424, 441, 677, 720, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 1073, 1252
HpyF3I CTNAG 2 cut(s) 207, 584
HpySE526I ACGT 2 cut(s) 612, 918
Hsp92II CATG 5 cut(s) 49, 625, 794, 1086, 1283
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
LmnI GCTCC 1 cut(s) 1115
Lsp1109I GCAGC 4 cut(s) 168, 289, 346, 1034
LweI GCATC 3 cut(s) 585, 879, 925
MaeI CTAG 2 cut(s) 93, 1019
MaeII ACGT 2 cut(s) 612, 918
MaeIII GTNAC 5 cut(s) 608, 793, 845, 1054, 1235
MalI GATC 6 cut(s) 279, 505, 590, 1071, 1221, 1269
MboI GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
MboII GAAGA 7 cut(s) 348, 499, 502, 1013, 1016, 1046, 1219
MflI RGATCY 2 cut(s) 503, 1069
MhlI GDGCHC 1 cut(s) 1202
MluCI AATT 5 cut(s) 187, 458, 974, 1136, 1170
MlyI GAGTC 2 cut(s) 302, 359
MmeI TCCRAC 4 cut(s) 37, 481, 987, 1011
MseI TTAA 3 cut(s) 347, 1095, 1104
MslI CAYNNNNRTG 2 cut(s) 917, 1227
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 1094
MspI CCGG 2 cut(s) 446, 606
MspR9I CCNGG 2 cut(s) 229, 508
MvaI CCWGG 2 cut(s) 229, 508
MwoI GCNNNNNNNGC 3 cut(s) 250, 1073, 1252
NdeII GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
NlaIII CATG 5 cut(s) 49, 625, 794, 1086, 1283
NlaIV GGNNCC 3 cut(s) 373, 505, 1177
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 608, 1054
NspI RCATGY 1 cut(s) 794
OliI CACNNNNGTG 1 cut(s) 917
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 1 cut(s) 790
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PfeI GAWTC 4 cut(s) 413, 800, 959, 1040
PflFI GACNNNGTC 2 cut(s) 1060, 1121
PflMI CCANNNNNTGG 2 cut(s) 149, 272
PkrI GCNGC 5 cut(s) 155, 158, 304, 361, 1024
PleI GAGTC 2 cut(s) 301, 359
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 2 cut(s) 301, 359
Ppu21I YACGTR 2 cut(s) 613, 919
PpuMI RGGWCCY 1 cut(s) 372
PscI ACATGT 1 cut(s) 790
PsiI TTATAA 1 cut(s) 1297
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 227, 506
PspCI CACGTG 1 cut(s) 613
PspGI CCWGG 2 cut(s) 227, 506
PspN4I GGNNCC 3 cut(s) 373, 505, 1177
PspPI GGNCC 3 cut(s) 372, 782, 1176
PspPPI RGGWCCY 1 cut(s) 372
PstI CTGCAG 1 cut(s) 1069
PstNI CAGNNNCTG 2 cut(s) 272, 1073
PsuI RGATCY 2 cut(s) 503, 1069
PsyI GACNNNGTC 2 cut(s) 1060, 1121
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 5 cut(s) 134, 167, 600, 635, 980
RsaNI GTAC 5 cut(s) 133, 166, 599, 634, 979
RseI CAYNNNNRTG 2 cut(s) 917, 1227
SaqAI TTAA 3 cut(s) 347, 1095, 1104
SatI GCNGC 5 cut(s) 154, 157, 303, 360, 1023
Sau3AI GATC 6 cut(s) 277, 503, 588, 1069, 1219, 1267
Sau96I GGNCC 3 cut(s) 372, 782, 1176
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 2 cut(s) 302, 359
ScrFI CCNGG 2 cut(s) 229, 508
SduI GDGCHC 1 cut(s) 1202
SfaNI GCATC 3 cut(s) 585, 879, 925
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 2 cut(s) 372, 782
SmiMI CAYNNNNRTG 2 cut(s) 917, 1227
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
Sse9I AATT 5 cut(s) 187, 458, 974, 1136, 1170
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 153
SspMI CTAG 2 cut(s) 93, 1019
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 227, 506
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 7 cut(s) 824, 836, 845, 1029, 1062, 1204, 1235
TaiI ACGT 2 cut(s) 615, 921
TaqI TCGA 3 cut(s) 655, 1116, 1227
TasI AATT 5 cut(s) 187, 458, 974, 1136, 1170
TatI WGTACW 4 cut(s) 165, 598, 633, 978
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 4 cut(s) 413, 800, 959, 1040
Tru1I TTAA 3 cut(s) 347, 1095, 1104
Tru9I TTAA 3 cut(s) 347, 1095, 1104
TscAI CASTG 4 cut(s) 827, 1032, 1065, 1209
TseFI GTSAC 2 cut(s) 608, 1054
TseI GCWGC 4 cut(s) 156, 302, 359, 1022
Tsp45I GTSAC 2 cut(s) 608, 1054
TspDTI ATGAA 9 cut(s) 75, 87, 467, 638, 825, 1014, 1023, 1053, 1071
TspRI CASTG 4 cut(s) 827, 1032, 1065, 1209
Tth111I GACNNNGTC 2 cut(s) 1060, 1121
Van91I CCANNNNNTGG 2 cut(s) 149, 272
Vha464I CTTAAG 1 cut(s) 1094
VpaK11BI GGWCC 2 cut(s) 372, 782
XagI CCTNNNNNAGG 1 cut(s) 511
XceI RCATGY 1 cut(s) 794
XspI CTAG 2 cut(s) 93, 1019
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.