Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

5300602 .. 5303037

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGAACTTCCGCCCACCTTTCACACCTTCAACAACTACCGGTAGCTCTTCTTCTCCATCTTCAACTCTGGAAAGTTCATCATCTCAGTTGTATCATGATCCAGTGGTTTGCTACCTACCACACCCACATTGGCAGCAACCACCATGTTTTTCATATCCTCCTCCCATGCGTCCTGATCCAATCCCAAGTTCGGCTGCGTGGGAAACAAGGATGGCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGCTTCTTCAAGGTTGGCAGTAGGGAAGGATCCATCTAGTGCTGTTTCTGAAAAGCCGAATGAACAATACATCTACTCATTCTGCACGCCGGATAACAAGAAACTGAGATTGTTGTTCAAAAAACAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTCTTTCAACCCAAGAGTGGGGTTTGAAATACAAGTACTGGTCAAATAACAAAAGCCGAATGTATGTGCTTGAAAACGCAGGAGACTTCGTTAGGCAAACTGGAGTGGAGGTGGGAGATAGCATTCATCTTTACGAAGATGAATGCAAGAATCTTGAAGCAGTACGTCTCCATCCACCGGCAGGCTCAAGTAAGACCAGTCCATGTTGTCAAGCCCTCCTCAACCTCATATCATCAACAAAACTATACCCATACCAACACCAACACCACACCAACACCGCTAAAAGAGACAACACCAACACCAAAACCAACACCGCCATCGATCACACCAACAGCAAAACCCATGCCAACACAACAAGCATATACACGCCATACGCCTACAATGAAACCGGAACCGGTGAAGTTGAGACTTCTTCAGCGGTAGTATTACTACAACAACAACGCAATGAACAACTAGTAGAAACAAACAACATGGTGACATTGTTTACGGATCCTGCTTCTTCATATAGACAAAGTGAAGAAGCTAGCAACACCAACAACGACGTCACTAGACAACAACAAACCTCTACTCAACCAGCTATGGCAGGGATATTCGGGTCCTCATCATCATCATCGTCCTCACCGAGTATGAAGATGGCTGAGGATAACTTTGGCGACTGCTATGAAGGCCTTGGGACGCTCCCGGAAGTAGTCGATCGTTTTAATCATTCTCTTTTTTATTTTGACGACATAATAACGGACGACAAGACGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

422

Amino Acids

47.1

Weight (kDa)

6.84

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	130 - 221	8.7e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1059
AccII	CGCG	1 cut(s)	269
AciI	CCGC	6 cut(s)	13, 267, 269, 792, 828, 932
AclWI	GGATC	7 cut(s)	95, 173, 296, 309, 427, 998, 1011
AcuI	CTGAAG	2 cut(s)	422, 912
AcyI	GRCGYC	1 cut(s)	1056
AfaI	GTAC	2 cut(s)	551, 678
AfiI	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 691, 695
AgeI	ACCGGT	2 cut(s)	41, 908
AgsI	TTSAA	8 cut(s)	33, 66, 282, 391, 522, 541, 587, 671
AhlI	ACTAGT	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	6 cut(s)	48, 257, 400, 499, 1037, 1091
AluI	AGCT	6 cut(s)	48, 257, 400, 499, 1037, 1091
Alw26I	GTCTC	4 cut(s)	591, 686, 795, 914
AlwI	GGATC	7 cut(s)	95, 173, 296, 309, 427, 998, 1011
AoxI	GGCC	2 cut(s)	427, 1180
ApeKI	GCWGC	4 cut(s)	136, 197, 257, 272
AsiGI	ACCGGT	2 cut(s)	41, 908
AspS9I	GGNCC	2 cut(s)	427, 1110
AsuC2I	CCSGG	1 cut(s)	1196
AsuHPI	GGTGA	3 cut(s)	923, 1000, 1125
AsuNHI	GCTAGC	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	1110
BamHI	GGATCC	2 cut(s)	301, 1003
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BauI	CACGAG	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	1152
BbvI	GCAGC	4 cut(s)	148, 184, 244, 259
BccI	CCATC	6 cut(s)	67, 208, 313, 693, 839, 1141
BcnI	CCSGG	1 cut(s)	1196
BcoDI	GTCTC	4 cut(s)	591, 686, 795, 914
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	4 cut(s)	309, 968, 1038, 1062
BisI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
BlsI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	1 cut(s)	1196
Bme18I	GGWCC	1 cut(s)	1110
BmgT120I	GGNCC	2 cut(s)	427, 1110
BmiI	GGNNCC	4 cut(s)	303, 907, 1005, 1111
BmrFI	CCNGG	1 cut(s)	1196
BmsI	GCATC	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	1041
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	1152
BpuEI	CTTGAG	1 cut(s)	685
BpuMI	CCSGG	1 cut(s)	1196
Bsa29I	ATCGAT	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	1056
BsaJI	CCNNGG	2 cut(s)	267, 1183
BsaWI	WCCGGW	3 cut(s)	41, 902, 908
BsaXI	ACNNNNNCTCC	4 cut(s)	588, 609, 618, 639
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 691, 695
Bse118I	RCCGGY	3 cut(s)	41, 691, 908
Bse1I	ACTGG	4 cut(s)	104, 557, 619, 711
Bse3DI	GCAATG	1 cut(s)	964
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	267, 1183
BseGI	GGATG	3 cut(s)	219, 517, 685
BseLI	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 691, 695
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	5 cut(s)	101, 233, 368, 491, 1143
BseNI	ACTGG	4 cut(s)	104, 557, 619, 711
BseRI	GAGGAG	2 cut(s)	153, 722
BseXI	GCAGC	4 cut(s)	148, 184, 244, 259
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	1210
BshFI	GGCC	2 cut(s)	429, 1182
BshTI	ACCGGT	2 cut(s)	41, 908
BshVI	ATCGAT	1 cut(s)	834
BsiEI	CGRYCG	1 cut(s)	1210
BsiSI	CCGG	7 cut(s)	42, 362, 430, 692, 903, 909, 1196
BslFI	GGGAC	1 cut(s)	1201
BslI	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 691, 695
BsmAI	GTCTC	4 cut(s)	591, 686, 795, 914
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	1201
BsmI	GAATGC	2 cut(s)	636, 662
BsnI	GGCC	2 cut(s)	429, 1182
Bsp143I	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
BspACI	CCGC	6 cut(s)	13, 267, 269, 792, 828, 932
BspANI	GGCC	2 cut(s)	429, 1182
BspCNI	CTCAG	5 cut(s)	100, 234, 369, 492, 1144
BspDI	ATCGAT	1 cut(s)	834
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	303, 907, 1005, 1111
BspOI	GCTAGC	1 cut(s)	1041
BspPI	GGATC	7 cut(s)	95, 173, 296, 309, 427, 998, 1011
BspQI	GCTCTTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	964
BsrFI	RCCGGY	3 cut(s)	41, 691, 908
BsrI	ACTGG	4 cut(s)	104, 557, 619, 711
BssAI	RCCGGY	3 cut(s)	41, 691, 908
BssECI	CCNNGG	2 cut(s)	267, 1183
BssMI	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
BssNI	GRCGYC	1 cut(s)	1056
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	1183
Bst2BI	CACGAG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	55, 223
BstACI	GRCGYC	1 cut(s)	1056
BstC8I	GCNNGC	4 cut(s)	220, 359, 697, 1039
BstDEI	CTNAG	5 cut(s)	87, 242, 377, 500, 1152
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	219, 517, 685
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	7 cut(s)	103, 181, 304, 422, 838, 1006, 1210
BstMAI	GTCTC	4 cut(s)	591, 686, 795, 914
BstMBI	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
BstMCI	CGRYCG	1 cut(s)	1210
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 266, 272, 1179
BstSCI	CCNGG	1 cut(s)	1194
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	148, 184, 244, 259
BstX2I	RGATCY	3 cut(s)	301, 419, 1003
BstYI	RGATCY	3 cut(s)	301, 419, 1003
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	429, 1182
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	219, 517, 685
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	220, 359, 697, 1039
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	3 cut(s)	41, 691, 908
Cfr13I	GGNCC	2 cut(s)	427, 1110
Cfr42I	CCGCGG	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	2 cut(s)	161, 1198
Csp6I	GTAC	2 cut(s)	550, 677
CspAI	ACCGGT	2 cut(s)	41, 908
CviAII	CATG	6 cut(s)	98, 147, 169, 717, 857, 985
CviQI	GTAC	2 cut(s)	550, 677
DdeI	CTNAG	5 cut(s)	87, 242, 377, 500, 1152
DpnI	GATC	7 cut(s)	102, 180, 303, 421, 837, 1005, 1209
DpnII	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
Eam1104I	CTCTTC	2 cut(s)	55, 223
EarI	CTCTTC	2 cut(s)	55, 223
Eco130I	CCWWGG	1 cut(s)	1183
Eco147I	AGGCCT	1 cut(s)	1182
Eco47I	GGWCC	1 cut(s)	1110
Eco57I	CTGAAG	2 cut(s)	422, 912
EcoO109I	RGGNCCY	1 cut(s)	1110
EcoT14I	CCWWGG	1 cut(s)	1183
ErhI	CCWWGG	1 cut(s)	1183
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	6 cut(s)	101, 150, 172, 720, 860, 988
FaqI	GGGAC	1 cut(s)	1201
FatI	CATG	6 cut(s)	97, 146, 168, 716, 856, 984
Fnu4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FokI	GGATG	3 cut(s)	226, 524, 672
Fsp4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FspBI	CTAG	4 cut(s)	309, 968, 1038, 1062
GluI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	429, 1182
HapII	CCGG	7 cut(s)	42, 362, 430, 692, 903, 909, 1196
HgaI	GACGC	2 cut(s)	161, 1198
Hin1I	GRCGYC	1 cut(s)	1056
Hin1II	CATG	6 cut(s)	101, 150, 172, 720, 860, 988
HinfI	GANTC	2 cut(s)	504, 664
HpaII	CCGG	7 cut(s)	42, 362, 430, 692, 903, 909, 1196
HphI	GGTGA	3 cut(s)	923, 1000, 1125
Hpy166II	GTNNAC	1 cut(s)	999
Hpy188I	TCNGA	4 cut(s)	243, 322, 444, 481
Hpy188III	TCNNGA	4 cut(s)	71, 98, 176, 668
Hpy8I	GTNNAC	1 cut(s)	999
Hpy99I	CGWCG	1 cut(s)	1058
HpyAV	CCTTC	6 cut(s)	39, 292, 449, 476, 482, 1172
HpyCH4IV	ACGT	4 cut(s)	414, 679, 1056, 1262
HpyCH4V	TGCA	2 cut(s)	357, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 266, 272, 1179
HpyF3I	CTNAG	5 cut(s)	87, 242, 377, 500, 1152
HpySE526I	ACGT	4 cut(s)	414, 679, 1056, 1262
Hsp92I	GRCGYC	1 cut(s)	1056
Hsp92II	CATG	6 cut(s)	101, 150, 172, 720, 860, 988
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	1197
Lsp1109I	GCAGC	4 cut(s)	148, 184, 244, 259
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	4 cut(s)	309, 968, 1038, 1062
MaeII	ACGT	4 cut(s)	414, 679, 1056, 1262
MaeIII	GTNAC	3 cut(s)	410, 988, 1057
MalI	GATC	7 cut(s)	102, 180, 303, 421, 837, 1005, 1209
MboI	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
MflI	RGATCY	3 cut(s)	301, 419, 1003
MmeI	TCCRAC	2 cut(s)	397, 504
MseI	TTAA	1 cut(s)	1215
MspA1I	CMGCKG	3 cut(s)	269, 400, 932
MspI	CCGG	7 cut(s)	42, 362, 430, 692, 903, 909, 1196
MspR9I	CCNGG	1 cut(s)	1196
Mva1269I	GAATGC	2 cut(s)	636, 662
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	263, 266, 272, 1179
NciI	CCSGG	1 cut(s)	1196
NdeII	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
NheI	GCTAGC	1 cut(s)	1037
NlaIII	CATG	6 cut(s)	101, 150, 172, 720, 860, 988
NlaIV	GGNNCC	4 cut(s)	303, 907, 1005, 1111
NmuCI	GTSAC	3 cut(s)	410, 988, 1057
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	1182
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	1133
PctI	GAATGC	2 cut(s)	636, 662
PfeI	GAWTC	2 cut(s)	504, 664
PfoI	TCCNGGA	1 cut(s)	1194
PinAI	ACCGGT	2 cut(s)	41, 908
PkrI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
Ple19I	CGATCG	1 cut(s)	1210
PpuMI	RGGWCCY	1 cut(s)	1110
Psp5II	RGGWCCY	1 cut(s)	1110
PspN4I	GGNNCC	4 cut(s)	303, 907, 1005, 1111
PspPI	GGNCC	2 cut(s)	427, 1110
PspPPI	RGGWCCY	1 cut(s)	1110
PsuI	RGATCY	3 cut(s)	301, 419, 1003
PvuI	CGATCG	1 cut(s)	1210
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	551, 678
RsaNI	GTAC	2 cut(s)	550, 677
SacII	CCGCGG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	1215
SatI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
Sau3AI	GATC	7 cut(s)	100, 178, 301, 419, 835, 1003, 1207
Sau96I	GGNCC	2 cut(s)	427, 1110
ScaI	AGTACT	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	1196
SfaNI	GCATC	1 cut(s)	502
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	1110
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SpeI	ACTAGT	1 cut(s)	967
SseBI	AGGCCT	1 cut(s)	1182
SsiI	CCGC	6 cut(s)	13, 267, 269, 792, 828, 932
SspMI	CTAG	4 cut(s)	309, 968, 1038, 1062
StuI	AGGCCT	1 cut(s)	1182
StyD4I	CCNGG	1 cut(s)	1194
StyI	CCWWGG	1 cut(s)	1183
TaiI	ACGT	4 cut(s)	417, 682, 1059, 1265
TaqI	TCGA	2 cut(s)	834, 1206
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	269, 272
TfiI	GAWTC	2 cut(s)	504, 664
Tru1I	TTAA	1 cut(s)	1215
Tru9I	TTAA	1 cut(s)	1215
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	3 cut(s)	410, 988, 1057
TseI	GCWGC	4 cut(s)	136, 197, 257, 272
Tsp45I	GTSAC	3 cut(s)	410, 988, 1057
TspGWI	ACGGA	2 cut(s)	1016, 1265
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	1110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	4 cut(s)	309, 968, 1038, 1062
ZraI	GACGTC	1 cut(s)	1057
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.