Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

6531126 .. 6532738

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCGCAGAACAACGAACAAGACCTCTACTTGTTCGGCACACCGGATAACAGGATTTTTGTTCAAAAAGGAGATCAAGAAGAGTGATGTTGGATCTTGGGGCAGGATTGTCCTTCCTAAGAAGGAGGCAGAAAAATACCTTCCCAGCCTCTCTGACAAGGAAGGAATCGAGTTGATGATCAAGGATGTCCTCTCAAATCAAGAGTGGGGTTTGACATACAACTATACAAGTACTGGACCAATAACTAACAACAGCCGAATGTATGTTCTTGAACATACAGGAGACTTTGTTAGGCAAACTGGAGTGGTGGTGGGAGATAGCATTCATCTACCACCAACGAAGACAACAGCATCGACCAAGAGAAGAATCCTAACCCCACGATCGGTAACAACAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

133

Amino Acids

14.95

Weight (kDa)

9.9

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	21 - 110	1.5e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AclWI	GGATC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	64, 272
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	347
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	276
BmcAI	AGTACT	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 294, 303, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	238, 304
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	238, 304
BseYI	CCCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	72, 92, 177, 380
BspPI	GGATC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	238, 304
BssMI	GATC	4 cut(s)	72, 92, 177, 380
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	4 cut(s)	75, 95, 180, 383
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	4 cut(s)	72, 92, 177, 380
BstMCI	CGRYCG	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	2 cut(s)	147, 255
CviKI_1	RGCY	2 cut(s)	147, 255
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	4 cut(s)	74, 94, 179, 382
DpnII	GATC	4 cut(s)	72, 92, 177, 380
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	236
FaiI	YATR	5 cut(s)	217, 225, 264, 276, 400
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	1 cut(s)	197
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	165, 366
HpaII	CCGG	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	76, 200, 269
HpyAV	CCTTC	4 cut(s)	115, 122, 149, 155
HpyF3I	CTNAG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	72, 92, 177, 380
LpnPI	CCDG	7 cut(s)	36, 56, 88, 157, 219, 264, 285
LweI	GCATC	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	74, 94, 179, 382
MboI	GATC	4 cut(s)	72, 92, 177, 380
MboII	GAAGA	3 cut(s)	91, 352, 375
MflI	RGATCY	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	34, 118, 158, 200
MspI	CCGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	321
NdeII	GATC	4 cut(s)	72, 92, 177, 380
NsbI	TGCGCA	1 cut(s)	5
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	165, 366
Ple19I	CGATCG	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
Sau3AI	GATC	4 cut(s)	72, 92, 177, 380
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	232
SetI	ASST	2 cut(s)	26, 141
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	236
TaqI	TCGA	2 cut(s)	168, 353
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	165, 366
TspDTI	ATGAA	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.