Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

31485946 .. 31487370

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACCTCCATTTATGAACCTATGAGTTCCTCCCCTTCAACTCTTGCTAGTTCATCCTCTCTGTCCTATCATTATTCAGCAGTTCAGTACCTACCACCACTCAATGGCGGCAGCCAGCTGTACTTTCAAAGCTCATACCCTAATTACCAGAAGCAGGCCTCTCAGCCCCCCTTCCAATATCCCAGGTATCCAGTCCTGCTTCCTCGGCCACAGCAAAATCCAGTCTCTGGAGATCAAGAAGGGATTGAGTCCAAGGCTGCAAGAGATGAGCAAAGGATGGCTCGCCAAAGAAGACACTTTTTAAGCAGAAGCGCTGCTGACTCTGGGTCCTCATCAAGTTCAATGCAGATGGATTTATGTGGTGCTGATTCTGATATGCAGAACACAGACCTCTGCACGCCGGATATGAAGGAATTGAGAGTGTTGTTCAAGAAGGAGTTGAAGAAGAGTGATGTTGGATCCTGGGGCAGGATTGTCGTTCCAAAGTGGTGTATCGATCCTTTCTTCAATGTACCAGGAAGCTTTATTAGGAAAAATGGACTGGAGGTGGGAGATTGCATTTCTCTTTACAAGGATGAGAGCAAGAACTTTGTGAGTCTCTCTTATTTTCTTTTACATTACGAATTTATTACAGATAAGAAGTGGTATGTTGAAAATTGCCCTTCACCTTTTTCTGTAATGAGGACGGTATCTTTGGAGGATAGTGAAATGGTGGTGATCGAGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

243

Amino Acids

27.58

Weight (kDa)

6.32

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	104, 227
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	3 cut(s)	453, 466, 491
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	623
AfaI	GTAC	3 cut(s)	89, 122, 513
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	4 cut(s)	104, 154, 227, 468
AgsI	TTSAA	7 cut(s)	39, 128, 342, 430, 442, 508, 653
AhdI	GACNNNNNGTC	1 cut(s)	325
AjnI	CCWGG	3 cut(s)	182, 461, 514
AluBI	AGCT	3 cut(s)	118, 132, 522
AluI	AGCT	3 cut(s)	118, 132, 522
Alw26I	GTCTC	3 cut(s)	229, 602, 716
AlwI	GGATC	3 cut(s)	453, 466, 491
AlwNI	CAGNNNCTG	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	2 cut(s)	156, 206
ApeKI	GCWGC	3 cut(s)	111, 257, 314
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	676, 708
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	657, 727
AvaII	GGWCC	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	123, 244, 301
BccI	CCATC	2 cut(s)	271, 343
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	3 cut(s)	184, 463, 516
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	3 cut(s)	229, 602, 716
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	4 cut(s)	109, 112, 258, 315
BlsI	GCNGC	4 cut(s)	110, 113, 259, 316
Bme1390I	CCNGG	3 cut(s)	184, 463, 516
Bme18I	GGWCC	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	328, 460
BmrFI	CCNGG	3 cut(s)	184, 463, 516
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	2 cut(s)	249, 563
Bsa29I	ATCGAT	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	182, 203, 252, 462
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 154, 227, 468
Bse1I	ACTGG	3 cut(s)	191, 221, 546
BseBI	CCWGG	3 cut(s)	184, 463, 516
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	4 cut(s)	182, 203, 252, 462
BseGI	GGATG	3 cut(s)	53, 282, 580
BseLI	CCNNNNNNNGG	4 cut(s)	104, 154, 227, 468
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	3 cut(s)	191, 221, 546
BseXI	GCAGC	3 cut(s)	123, 244, 301
BsgI	GTGCAG	1 cut(s)	379
BshFI	GGCC	2 cut(s)	158, 208
BshVI	ATCGAT	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	104, 154, 227, 468
BsmAI	GTCTC	3 cut(s)	229, 602, 716
BsnI	GGCC	2 cut(s)	158, 208
Bsp143I	GATC	4 cut(s)	232, 458, 496, 717
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	158, 208
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	328, 460
BspPI	GGATC	3 cut(s)	453, 466, 491
BsrI	ACTGG	3 cut(s)	191, 221, 546
BssECI	CCNNGG	4 cut(s)	182, 203, 252, 462
BssMI	GATC	4 cut(s)	232, 458, 496, 717
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	184, 463, 516
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	116, 156, 283, 398
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	53, 282, 580
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	4 cut(s)	235, 461, 499, 720
BstMAI	GTCTC	3 cut(s)	229, 602, 716
BstMBI	GATC	4 cut(s)	232, 458, 496, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	3 cut(s)	184, 463, 516
BstSCI	CCNGG	3 cut(s)	182, 461, 514
BstV1I	GCAGC	3 cut(s)	123, 244, 301
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	158, 208
BsuTUI	ATCGAT	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	53, 282, 580
Cac8I	GCNNGC	4 cut(s)	116, 156, 283, 398
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	88, 121, 512
CviJI	RGCY	9 cut(s)	114, 118, 132, 158, 166, 208, 257, 281, 522
CviKI_1	RGCY	9 cut(s)	114, 118, 132, 158, 166, 208, 257, 281, 522
CviQI	GTAC	3 cut(s)	88, 121, 512
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	4 cut(s)	234, 460, 498, 719
DpnII	GATC	4 cut(s)	232, 458, 496, 717
DriI	GACNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	440
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	327
Eco47III	AGCGCT	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	3 cut(s)	182, 461, 514
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaiI	YATR	7 cut(s)	15, 23, 136, 358, 377, 407, 648
Fnu4HI	GCNGC	4 cut(s)	109, 112, 258, 315
FokI	GGATG	3 cut(s)	40, 289, 587
Fsp4HI	GCNGC	4 cut(s)	109, 112, 258, 315
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	4 cut(s)	109, 112, 258, 315
GsuI	CTGGAG	2 cut(s)	249, 563
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	158, 208
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	4 cut(s)	248, 320, 368, 595
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	657, 727
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	4 cut(s)	228, 236, 430, 721
HpyAV	CCTTC	6 cut(s)	45, 181, 233, 403, 427, 672
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4V	TGCA	5 cut(s)	260, 346, 379, 396, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	1 cut(s)	162
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	232, 458, 496, 717
Lsp1109I	GCAGC	3 cut(s)	123, 244, 301
MaeI	CTAG	1 cut(s)	48
MalI	GATC	4 cut(s)	234, 460, 498, 719
MboI	GATC	4 cut(s)	232, 458, 496, 717
MboII	GAAGA	4 cut(s)	303, 454, 457, 496
MflI	RGATCY	1 cut(s)	458
MluCI	AATT	4 cut(s)	142, 413, 623, 655
MlyI	GAGTC	3 cut(s)	257, 314, 604
MmeI	TCCRAC	1 cut(s)	436
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	184, 463, 516
MvaI	CCWGG	3 cut(s)	184, 463, 516
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	4 cut(s)	232, 458, 496, 717
NlaIV	GGNNCC	2 cut(s)	328, 460
NmeAIII	GCCGAG	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	2 cut(s)	104, 227
PkrI	GCNGC	4 cut(s)	110, 113, 259, 316
PleI	GAGTC	3 cut(s)	256, 314, 603
PpsI	GAGTC	3 cut(s)	256, 314, 603
PpuMI	RGGWCCY	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	182, 461, 514
PspGI	CCWGG	3 cut(s)	182, 461, 514
PspN4I	GGNNCC	2 cut(s)	328, 460
PspPI	GGNCC	1 cut(s)	327
PspPPI	RGGWCCY	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	89, 122, 513
RsaNI	GTAC	3 cut(s)	88, 121, 512
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	4 cut(s)	109, 112, 258, 315
Sau3AI	GATC	4 cut(s)	232, 458, 496, 717
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	3 cut(s)	257, 314, 604
ScrFI	CCNGG	3 cut(s)	184, 463, 516
SinI	GGWCC	1 cut(s)	327
Sse9I	AATT	4 cut(s)	142, 413, 623, 655
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	182, 461, 514
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	688
TaqI	TCGA	2 cut(s)	495, 720
TasI	AATT	4 cut(s)	142, 413, 623, 655
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	3 cut(s)	111, 257, 314
TspDTI	ATGAA	3 cut(s)	30, 42, 422
Van91I	CCANNNNNTGG	2 cut(s)	104, 227
VpaK11BI	GGWCC	1 cut(s)	327
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	623
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.