Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

5329505 .. 5334074

Gene Structure 4570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG064300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGAACTTCCGCCCACCTTTCACACCTTCAACAACTACCGCTAGCTCTTCTTCTCCATCTTCAACTCTGGACAGTTCATCATCTCAGTTGTATCATGATCCAGTGGTTTGCTACCTACCACCACACCCACATTGGCAGCAACCACCATGTTTTTCATATCCTCCTCCCATGCGTCCCGATCCAGTCCCAAGTTCGGCTGCGTGGGAAACAAGGATGGCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGCTTCTTCAAGGTTGGCAGTAGGGAAGGATCCATCTAGTGCTGTTTCTGAAACGCCGAATGAACAATACATCTACTCATTCTGCACGCCGGATAACAAGAAACTGAGAATGTTGTTCGAAAAACAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTCTTTCAACCCAAGAATGGGGTTTGAAATACAAATACTGGTCAAATAACAAAAGCCGAATGTATGTGCTTGAAAACACAGGAGACTTTGTTAGGCAATCTGGAGTGGAGGTGGGAGATAGCATTCATCTTTACGAAGATGAATGCAAGAATATTTACGTCTCCATCCACCGGCAGGCTCAAGTAAGACCAGAAGTAAGACCAGTCCATGTTGTCAAGCCCTCCTCAACCTCATATCATCAACAAAACTATACCCATACCAACACCAAAACCAACACCGCCATCGATCACACCAACAGCAAAACCCATGCCAACACAACAAGCATATACACGCCATACGCCTACAATGAAACCGGAACCGGTGAAGTTGAGACTTCTTCAGCGGTAGTATTACTACAACAACAACGCAATGAACAACTAGTAGAAACAAACAACATGGTGACATTGTTTACGGATCCTGCTTCTTCATATAGACAAAGTGAAGAAGCTAGCAACACCAACAACGACGTCACTAGACAACAACAAACCTCTACTCAACCAGCTATGGCAGGGATATTCGGGTCCTCATCATCATCATCGTCCTCACCGAGTATAGTGAAGATGGCTGAGGATAACTTTGGCGACTGCTATGAAGGCCTTGGGACGCTCCCGGAAGTAGTCGATCGTTTTAATCATTCTCTTTTTGATTTTGACGACATAATAAGGGACGACAAGACGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

412

Amino Acids

46.19

Weight (kDa)

6.28

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	131 - 231	4.3e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1026
AccII	CGCG	1 cut(s)	272
AciI	CCGC	6 cut(s)	13, 42, 270, 272, 795, 899
AclWI	GGATC	7 cut(s)	95, 176, 299, 312, 430, 965, 978
AcuI	CTGAAG	2 cut(s)	425, 879
AcyI	GRCGYC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	5 cut(s)	196, 534, 535, 687, 691
AgeI	ACCGGT	1 cut(s)	875
AgsI	TTSAA	6 cut(s)	33, 66, 285, 525, 544, 590
AhlI	ACTAGT	1 cut(s)	934
AluBI	AGCT	6 cut(s)	48, 260, 403, 502, 1004, 1058
AluI	AGCT	6 cut(s)	48, 260, 403, 502, 1004, 1058
Alw26I	GTCTC	3 cut(s)	594, 682, 881
AlwI	GGATC	7 cut(s)	95, 176, 299, 312, 430, 965, 978
AoxI	GGCC	2 cut(s)	430, 1150
ApeKI	GCWGC	4 cut(s)	139, 200, 260, 275
AsiGI	ACCGGT	1 cut(s)	875
AspS9I	GGNCC	2 cut(s)	430, 1077
AsuC2I	CCSGG	1 cut(s)	1166
AsuHPI	GGTGA	3 cut(s)	890, 967, 1092
AsuII	TTCGAA	1 cut(s)	393
AsuNHI	GCTAGC	2 cut(s)	44, 1004
AvaII	GGWCC	1 cut(s)	1077
BamHI	GGATCC	2 cut(s)	304, 970
BauI	CACGAG	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	1122
BbvI	GCAGC	4 cut(s)	151, 187, 247, 262
BccI	CCATC	6 cut(s)	67, 211, 316, 689, 806, 1111
BcnI	CCSGG	1 cut(s)	1166
BcoDI	GTCTC	3 cut(s)	594, 682, 881
BcuI	ACTAGT	1 cut(s)	934
BfaI	CTAG	5 cut(s)	45, 312, 935, 1005, 1029
BisI	GCNGC	6 cut(s)	140, 201, 261, 270, 273, 276
BlsI	GCNGC	6 cut(s)	141, 202, 262, 271, 274, 277
Bme1390I	CCNGG	1 cut(s)	1166
Bme18I	GGWCC	1 cut(s)	1077
BmgT120I	GGNCC	2 cut(s)	430, 1077
BmiI	GGNNCC	4 cut(s)	306, 874, 972, 1078
BmrFI	CCNGG	1 cut(s)	1166
BmsI	GCATC	1 cut(s)	505
BmtI	GCTAGC	2 cut(s)	48, 1008
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	1122
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	1166
Bsa29I	ATCGAT	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	1023
BsaJI	CCNNGG	2 cut(s)	270, 1153
BsaWI	WCCGGW	2 cut(s)	869, 875
BsaXI	ACNNNNNCTCC	4 cut(s)	591, 612, 621, 642
Bsc4I	CCNNNNNNNGG	5 cut(s)	196, 534, 535, 687, 691
Bse118I	RCCGGY	2 cut(s)	687, 875
Bse1I	ACTGG	4 cut(s)	104, 185, 560, 719
Bse3DI	GCAATG	1 cut(s)	931
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	2 cut(s)	270, 1153
BseGI	GGATG	3 cut(s)	222, 520, 681
BseLI	CCNNNNNNNGG	5 cut(s)	196, 534, 535, 687, 691
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	5 cut(s)	101, 236, 371, 494, 1113
BseNI	ACTGG	4 cut(s)	104, 185, 560, 719
BseRI	GAGGAG	2 cut(s)	156, 730
BseXI	GCAGC	4 cut(s)	151, 187, 247, 262
BsgI	GTGCAG	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	1180
BshFI	GGCC	2 cut(s)	432, 1152
BshTI	ACCGGT	1 cut(s)	875
BshVI	ATCGAT	1 cut(s)	801
BsiEI	CGRYCG	1 cut(s)	1180
BsiSI	CCGG	6 cut(s)	365, 433, 688, 870, 876, 1166
BslFI	GGGAC	4 cut(s)	162, 173, 1171, 1235
BslI	CCNNNNNNNGG	5 cut(s)	196, 534, 535, 687, 691
BsmAI	GTCTC	3 cut(s)	594, 682, 881
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	4 cut(s)	162, 173, 1171, 1235
BsmI	GAATGC	2 cut(s)	639, 665
BsnI	GGCC	2 cut(s)	432, 1152
Bsp119I	TTCGAA	1 cut(s)	393
Bsp143I	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
BspACI	CCGC	6 cut(s)	13, 42, 270, 272, 795, 899
BspANI	GGCC	2 cut(s)	432, 1152
BspCNI	CTCAG	5 cut(s)	100, 237, 372, 495, 1114
BspDI	ATCGAT	1 cut(s)	801
BspFNI	CGCG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	306, 874, 972, 1078
BspOI	GCTAGC	2 cut(s)	48, 1008
BspPI	GGATC	7 cut(s)	95, 176, 299, 312, 430, 965, 978
BspQI	GCTCTTC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	931
BsrFI	RCCGGY	2 cut(s)	687, 875
BsrI	ACTGG	4 cut(s)	104, 185, 560, 719
BssAI	RCCGGY	2 cut(s)	687, 875
BssECI	CCNNGG	2 cut(s)	270, 1153
BssMI	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
BssNI	GRCGYC	1 cut(s)	1023
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	1153
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	55, 226
BstACI	GRCGYC	1 cut(s)	1023
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	46, 223, 362, 693, 1006
BstDEI	CTNAG	5 cut(s)	87, 245, 380, 503, 1122
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	222, 520, 681
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	7 cut(s)	103, 184, 307, 425, 805, 973, 1180
BstMAI	GTCTC	3 cut(s)	594, 682, 881
BstMBI	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
BstMCI	CGRYCG	1 cut(s)	1180
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 269, 275, 1149
BstSCI	CCNGG	1 cut(s)	1164
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	151, 187, 247, 262
BstX2I	RGATCY	3 cut(s)	304, 422, 970
BstYI	RGATCY	3 cut(s)	304, 422, 970
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	432, 1152
BsuTUI	ATCGAT	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	222, 520, 681
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	5 cut(s)	46, 223, 362, 693, 1006
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	2 cut(s)	687, 875
Cfr13I	GGNCC	2 cut(s)	430, 1077
Cfr42I	CCGCGG	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	801
CseI	GACGC	2 cut(s)	164, 1168
CspAI	ACCGGT	1 cut(s)	875
CviAII	CATG	6 cut(s)	98, 150, 172, 725, 824, 952
DdeI	CTNAG	5 cut(s)	87, 245, 380, 503, 1122
DpnI	GATC	7 cut(s)	102, 183, 306, 424, 804, 972, 1179
DpnII	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
Eam1104I	CTCTTC	2 cut(s)	55, 226
EarI	CTCTTC	2 cut(s)	55, 226
Eco130I	CCWWGG	1 cut(s)	1153
Eco147I	AGGCCT	1 cut(s)	1152
Eco47I	GGWCC	1 cut(s)	1077
Eco57I	CTGAAG	2 cut(s)	425, 879
EcoO109I	RGGNCCY	1 cut(s)	1077
EcoT14I	CCWWGG	1 cut(s)	1153
ErhI	CCWWGG	1 cut(s)	1153
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	6 cut(s)	101, 153, 175, 728, 827, 955
FaqI	GGGAC	4 cut(s)	162, 173, 1171, 1235
FatI	CATG	6 cut(s)	97, 149, 171, 724, 823, 951
Fnu4HI	GCNGC	6 cut(s)	140, 201, 261, 270, 273, 276
FokI	GGATG	3 cut(s)	229, 527, 668
Fsp4HI	GCNGC	6 cut(s)	140, 201, 261, 270, 273, 276
FspBI	CTAG	5 cut(s)	45, 312, 935, 1005, 1029
GluI	GCNGC	6 cut(s)	140, 201, 261, 270, 273, 276
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	432, 1152
HapII	CCGG	6 cut(s)	365, 433, 688, 870, 876, 1166
HgaI	GACGC	2 cut(s)	164, 1168
Hin1I	GRCGYC	1 cut(s)	1023
Hin1II	CATG	6 cut(s)	101, 153, 175, 728, 827, 955
HinfI	GANTC	1 cut(s)	507
HpaII	CCGG	6 cut(s)	365, 433, 688, 870, 876, 1166
HphI	GGTGA	3 cut(s)	890, 967, 1092
Hpy166II	GTNNAC	1 cut(s)	966
Hpy188I	TCNGA	4 cut(s)	246, 325, 447, 484
Hpy188III	TCNNGA	4 cut(s)	71, 98, 179, 618
Hpy8I	GTNNAC	1 cut(s)	966
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	6 cut(s)	39, 295, 452, 479, 485, 1142
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	4 cut(s)	417, 675, 1023, 1232
HpyCH4V	TGCA	2 cut(s)	360, 663
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 269, 275, 1149
HpyF3I	CTNAG	5 cut(s)	87, 245, 380, 503, 1122
HpySE526I	ACGT	4 cut(s)	417, 675, 1023, 1232
Hsp92I	GRCGYC	1 cut(s)	1023
Hsp92II	CATG	6 cut(s)	101, 153, 175, 728, 827, 955
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	1167
Lsp1109I	GCAGC	4 cut(s)	151, 187, 247, 262
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	5 cut(s)	45, 312, 935, 1005, 1029
MaeII	ACGT	4 cut(s)	417, 675, 1023, 1232
MaeIII	GTNAC	3 cut(s)	413, 955, 1024
MalI	GATC	7 cut(s)	102, 183, 306, 424, 804, 972, 1179
MboI	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
MflI	RGATCY	3 cut(s)	304, 422, 970
MmeI	TCCRAC	2 cut(s)	400, 507
MseI	TTAA	1 cut(s)	1185
MspA1I	CMGCKG	3 cut(s)	272, 403, 899
MspI	CCGG	6 cut(s)	365, 433, 688, 870, 876, 1166
MspR9I	CCNGG	1 cut(s)	1166
Mva1269I	GAATGC	2 cut(s)	639, 665
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	4 cut(s)	266, 269, 275, 1149
NciI	CCSGG	1 cut(s)	1166
NdeII	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
NheI	GCTAGC	2 cut(s)	44, 1004
NlaIII	CATG	6 cut(s)	101, 153, 175, 728, 827, 955
NlaIV	GGNNCC	4 cut(s)	306, 874, 972, 1078
NmuCI	GTSAC	3 cut(s)	413, 955, 1024
NspV	TTCGAA	1 cut(s)	393
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	1152
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	1100
PctI	GAATGC	2 cut(s)	639, 665
PfeI	GAWTC	1 cut(s)	507
PfoI	TCCNGGA	1 cut(s)	1164
PinAI	ACCGGT	1 cut(s)	875
PkrI	GCNGC	6 cut(s)	141, 202, 262, 271, 274, 277
Ple19I	CGATCG	1 cut(s)	1180
PpuMI	RGGWCCY	1 cut(s)	1077
Psp5II	RGGWCCY	1 cut(s)	1077
PspN4I	GGNNCC	4 cut(s)	306, 874, 972, 1078
PspPI	GGNCC	2 cut(s)	430, 1077
PspPPI	RGGWCCY	1 cut(s)	1077
PsuI	RGATCY	3 cut(s)	304, 422, 970
PvuI	CGATCG	1 cut(s)	1180
PvuII	CAGCTG	1 cut(s)	403
SacII	CCGCGG	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	1185
SatI	GCNGC	6 cut(s)	140, 201, 261, 270, 273, 276
Sau3AI	GATC	7 cut(s)	100, 181, 304, 422, 802, 970, 1177
Sau96I	GGNCC	2 cut(s)	430, 1077
ScrFI	CCNGG	1 cut(s)	1166
SfaNI	GCATC	1 cut(s)	505
Sfr303I	CCGCGG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	393
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	1077
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
SpeI	ACTAGT	1 cut(s)	934
SseBI	AGGCCT	1 cut(s)	1152
SsiI	CCGC	6 cut(s)	13, 42, 270, 272, 795, 899
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	5 cut(s)	45, 312, 935, 1005, 1029
StuI	AGGCCT	1 cut(s)	1152
StyD4I	CCNGG	1 cut(s)	1164
StyI	CCWWGG	1 cut(s)	1153
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	4 cut(s)	420, 678, 1026, 1235
TaqI	TCGA	3 cut(s)	393, 801, 1176
TauI	GCSGC	2 cut(s)	272, 275
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	1185
Tru9I	TTAA	1 cut(s)	1185
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	3 cut(s)	413, 955, 1024
TseI	GCWGC	4 cut(s)	139, 200, 260, 275
Tsp45I	GTSAC	3 cut(s)	413, 955, 1024
TspDTI	ATGAA	9 cut(s)	69, 147, 351, 632, 672, 879, 942, 972, 1161
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	1077
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XspI	CTAG	5 cut(s)	45, 312, 935, 1005, 1029
ZraI	GACGTC	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.