Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

5663127 .. 5670257

Gene Structure 7131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGAACTTCCGCCCACCTTTCACACCTTCAACAACTACCGCTAGCTCTTCTTCTCCATCTTCAACTCTGGAAAGTTCATCATCTCAGTTGTATCATGATCCAGTGGTTTGCTACCTACCACACCCACATTGGCAGCAACCACCATGTTTTTCATATCCTCCTCCCATGCGTCCTGATCCAATCCCAAGTTCGGCTGCGTGGGAAACAAGGATGGCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGCTTCTTCAAGGTTGGCAGTAGGGAAGGATCCATCTAGTGCTGTTTCTGAAAAGCCGAATGAACAATACATCTACTCATTCTGCACGCCGGATAACAAGAAACTGAGATTGTTGTTCAAAAAACAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTCTTTCAACCCAAGAGTGGGGTTTGAAATACAAGTACTGGTCAAATAACAAAAGCCGAATGTATGTGCTTGAAAACGCAGGAGACTTCGTTAGGCAAACTGGAGTGGAGGTGGGAGATAGCATTCATCTTTACGAAGATGAATGCAAGAATCTTTACGTCTCCATCCACCGGCAGGCTCAACTGCAATGTTCTCTCAACATGCTTGAACGATACTGGGTTCTTAGCCCAGAAATGTTGAAATCGAAATTGCAACATGGTGGGTTAATTAAAATGTTGGGGTACTCTGCGAGAGCGTGTTGCCAGATTTTTTGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

277

Amino Acids

31.43

Weight (kDa)

9.32

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	130 - 230	3.3e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	4 cut(s)	13, 42, 267, 269
AclWI	GGATC	5 cut(s)	95, 173, 296, 309, 427
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	551, 797
AfiI	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 684, 688
AgsI	TTSAA	9 cut(s)	33, 66, 282, 391, 522, 541, 587, 722, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	4 cut(s)	48, 257, 400, 499
AluI	AGCT	4 cut(s)	48, 257, 400, 499
Alw26I	GTCTC	2 cut(s)	591, 679
AlwI	GGATC	5 cut(s)	95, 173, 296, 309, 427
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	4 cut(s)	136, 197, 257, 272
AspS9I	GGNCC	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	148, 184, 244, 259
BccI	CCATC	4 cut(s)	67, 208, 313, 686
BcoDI	GTCTC	2 cut(s)	591, 679
BfaI	CTAG	2 cut(s)	45, 309
BisI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
BlsI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
BmcAI	AGTACT	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	739
BpmI	CTGGAG	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	4 cut(s)	588, 609, 618, 639
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 684, 688
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	4 cut(s)	104, 557, 619, 734
Bse3DI	GCAATG	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	219, 517, 678
BseLI	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 684, 688
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	4 cut(s)	101, 233, 368, 491
BseNI	ACTGG	4 cut(s)	104, 557, 619, 734
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	148, 184, 244, 259
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	362, 430, 685
BslI	CCNNNNNNNGG	5 cut(s)	193, 531, 532, 684, 688
BsmAI	GTCTC	2 cut(s)	591, 679
BsmBI	CGTCTC	1 cut(s)	679
BsmI	GAATGC	2 cut(s)	636, 662
BsnI	GGCC	1 cut(s)	429
Bsp143I	GATC	4 cut(s)	100, 178, 301, 419
BspACI	CCGC	4 cut(s)	13, 42, 267, 269
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	4 cut(s)	100, 234, 369, 492
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	303
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	95, 173, 296, 309, 427
BspQI	GCTCTTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	4 cut(s)	104, 557, 619, 734
BssAI	RCCGGY	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	100, 178, 301, 419
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	55, 223
BstC8I	GCNNGC	4 cut(s)	46, 220, 359, 690
BstDEI	CTNAG	5 cut(s)	87, 242, 377, 500, 737
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	219, 517, 678
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	4 cut(s)	103, 181, 304, 422
BstMAI	GTCTC	2 cut(s)	591, 679
BstMBI	GATC	4 cut(s)	100, 178, 301, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 266, 272
BstNSI	RCATGY	1 cut(s)	718
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	148, 184, 244, 259
BstX2I	RGATCY	2 cut(s)	301, 419
BstYI	RGATCY	2 cut(s)	301, 419
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	219, 517, 678
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	46, 220, 359, 690
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	427
Cfr42I	CCGCGG	1 cut(s)	270
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	550, 796
CviAII	CATG	5 cut(s)	98, 147, 169, 715, 770
CviQI	GTAC	2 cut(s)	550, 796
DdeI	CTNAG	5 cut(s)	87, 242, 377, 500, 737
DpnI	GATC	4 cut(s)	102, 180, 303, 421
DpnII	GATC	4 cut(s)	100, 178, 301, 419
Eam1104I	CTCTTC	2 cut(s)	55, 223
EarI	CTCTTC	2 cut(s)	55, 223
Eco57I	CTGAAG	1 cut(s)	422
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	5 cut(s)	101, 150, 172, 718, 773
FaiI	YATR	8 cut(s)	99, 148, 157, 170, 494, 579, 716, 771
FatI	CATG	5 cut(s)	97, 146, 168, 714, 769
Fnu4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FokI	GGATG	3 cut(s)	226, 524, 665
Fsp4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FspBI	CTAG	2 cut(s)	45, 309
GluI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	3 cut(s)	362, 430, 685
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	101, 150, 172, 718, 773
HinfI	GANTC	2 cut(s)	504, 664
HpaII	CCGG	3 cut(s)	362, 430, 685
Hpy188I	TCNGA	4 cut(s)	243, 322, 444, 481
Hpy188III	TCNNGA	3 cut(s)	71, 98, 176
HpyAV	CCTTC	5 cut(s)	39, 292, 449, 476, 482
HpyCH4IV	ACGT	2 cut(s)	414, 672
HpyCH4V	TGCA	4 cut(s)	357, 660, 700, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 266, 272
HpyF3I	CTNAG	5 cut(s)	87, 242, 377, 500, 737
HpySE526I	ACGT	2 cut(s)	414, 672
Hsp92II	CATG	5 cut(s)	101, 150, 172, 718, 773
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	100, 178, 301, 419
LguI	GCTCTTC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	148, 184, 244, 259
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	2 cut(s)	45, 309
MaeII	ACGT	2 cut(s)	414, 672
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	4 cut(s)	102, 180, 303, 421
MboI	GATC	4 cut(s)	100, 178, 301, 419
MboII	GAAGA	8 cut(s)	42, 45, 54, 240, 270, 415, 457, 662
MflI	RGATCY	2 cut(s)	301, 419
MluCI	AATT	2 cut(s)	761, 780
MmeI	TCCRAC	2 cut(s)	397, 504
MnlI	CCTC	6 cut(s)	171, 174, 224, 445, 485, 616
MseI	TTAA	3 cut(s)	779, 783, 832
MspA1I	CMGCKG	2 cut(s)	269, 400
MspI	CCGG	3 cut(s)	362, 430, 685
Mva1269I	GAATGC	2 cut(s)	636, 662
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	263, 266, 272
NdeII	GATC	4 cut(s)	100, 178, 301, 419
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	5 cut(s)	101, 150, 172, 718, 773
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	718
PacI	TTAATTAA	1 cut(s)	783
PagI	TCATGA	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	55
PctI	GAATGC	2 cut(s)	636, 662
PfeI	GAWTC	2 cut(s)	504, 664
PkrI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	2 cut(s)	301, 419
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	551, 797
RsaNI	GTAC	2 cut(s)	550, 796
SacII	CCGCGG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	779, 783, 832
SatI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
Sau3AI	GATC	4 cut(s)	100, 178, 301, 419
Sau96I	GGNCC	1 cut(s)	427
ScaI	AGTACT	1 cut(s)	551
SfaNI	GCATC	1 cut(s)	502
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	761, 780
SsiI	CCGC	4 cut(s)	13, 42, 267, 269
SspMI	CTAG	2 cut(s)	45, 309
TaiI	ACGT	2 cut(s)	417, 675
TaqI	TCGA	1 cut(s)	758
TasI	AATT	2 cut(s)	761, 780
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	269, 272
TfiI	GAWTC	2 cut(s)	504, 664
Tru1I	TTAA	3 cut(s)	779, 783, 832
Tru9I	TTAA	3 cut(s)	779, 783, 832
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	4 cut(s)	136, 197, 257, 272
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	5 cut(s)	69, 144, 348, 629, 669
TspRI	CASTG	1 cut(s)	111
XceI	RCATGY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	2 cut(s)	45, 309
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.