Rh5BG064700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001669
Physical Location & Seq
Reverse (-)
5356338 .. 5357304
967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG064700.1

Sequence Viewer

Length: 207 bp
ATGGAGAATTTCTTTACTCATTCTGTGGTGAACTCTGGTGGACTCAAAGGAGTCTTGGGTTCATGCTTTGTGGTTGAACAAATGAGAAGCAAGAAGCAAGACGTGGCTTCAAACCATGGAGTGCTTCAAGACGGAAATGAAAGCACATATTTCATTGAGTTCCTCAGGTTATGCTGCCCCTGTTTTTACTCACATTCCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.65

Weight (kDa)

6.88

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 7
AgsI TTSAA 3 cut(s) 77, 111, 128
AjiI CACGTC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 161
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 115
Bse21I CCTNAGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 115
BtrI CACGTC 1 cut(s) 103
CviAII CATG 2 cut(s) 63, 116
CviJI RGCY 1 cut(s) 107
CviKI_1 RGCY 1 cut(s) 107
DdeI CTNAG 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 66, 119
FaiI YATR 4 cut(s) 64, 117, 148, 172
FatI CATG 2 cut(s) 62, 115
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 66, 119
HinfI GANTC 2 cut(s) 42, 51
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 31, 41
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 31, 41
HpyCH4IV ACGT 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 66, 119
LpnPI CCDG 3 cut(s) 21, 151, 193
Lsp1109I GCAGC 1 cut(s) 161
MaeII ACGT 1 cut(s) 102
MluCI AATT 1 cut(s) 7
MlyI GAGTC 2 cut(s) 36, 60
MnlI CCTC 1 cut(s) 173
MseI TTAA 1 cut(s) 205
NcoI CCATGG 1 cut(s) 115
NlaIII CATG 2 cut(s) 66, 119
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 2 cut(s) 36, 59
PpsI GAGTC 2 cut(s) 36, 59
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 1 cut(s) 175
SchI GAGTC 2 cut(s) 36, 60
SetI ASST 2 cut(s) 105, 170
Sse9I AATT 1 cut(s) 7
StyI CCWWGG 1 cut(s) 115
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 7
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 51, 142, 153
TspGWI ACGGA 1 cut(s) 147
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.