Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

14717329 .. 14719973

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21641.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGGACTTCCATCAACCTTTCTTTCCTTCCACAACGACCACCATGACCCCCATTTATGAACCTATGAGTTCCTCCCCTTCAATTCTTGCTAGTTCCTCTATGTCCAATTATTATCCAAGAGTTCAGTACCTACCACCAACCAATGGTGGCGGCCAGTTGTACTTTCAAAGCTTGTACCCTCATTTCCAGAAGCAGGCCTCTCAGCCACCCTTCCAATATCGCAGGCATCCCCTCCTCCTCCCTCGGCCACAGCCAAATCCAGTCTCTGGAGATCAAGGAGGGATTGAGTCCAAGGCTGCAAGAGATCAGCGAAGGATGGCACGCCAAAGAAGGCTCTTTTCAAGCAGAAGCGCTGCTGACTCTGTTTCCTCATCAAGTTCAACGCAGATGGATTTATGTGGTGCTGATTCTGATAGGCAGAACACAGACCTCTGCACCCTCACCCCGGATATGAAGGAAATCAGAAAGTTGTTCAAGAAGGAGTTGAAGAAGAGTGATGTTGGTTGCTGGGGCAGGATTGTCATTCCAAAGAAGGAGGCAGAGAAATACCTTCCAAGCCTTGTTGAAAAACAAGGCATCGTGCTGTGGATCAGAGATGTCCATTCCAGTCATGTGTGGGGCATGAAATACAAGTACTGGGCAAATAACAACAGTCGAATGTATGTCTTCGAAAGTGCAGGAAGCTTTATTAAAACAAATAGACTGGAGGTGGGAGATTGCATTTCTCTTTACGAGGATGATGGCAAGAATTTTTACTTCTCCATAGACAAGGCAGGTACAAAACCAATACATGTAGCTGAGTCCTCGCATGAACAAAAGCACTATGCTACCAACTCTAAAGACGATGACGGTGACAGTAACAGCAATAGCATCACACAGATTACCAACTCTGCCGATAACCACAAGAATACCAACACAACCACCTACACAAGCTATTCCAGAAATACAAAATTGTACACACCATATACCTTCAATGAAGAAGATGAATTGTATCTAGCGGCACTGTTGGAAGATGAATCAGACAAGGTGGTGACATTGTCTGCGGATCCTGCTTTTTCACAGAGACGACTTGAGGAAGCTAATAGCTCCATCGACAATGTCATCAATAGTCAATCAGAAAGCTCTACTCAACCAGCTATGGCAGGGATTTGGGCCGCATCATCGTCCTCACAGAGCATAGTGAAGATGGTGGAGGAACACTTGGATGAGAATGATGATTTTTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

411

Amino Acids

46.3

Weight (kDa)

5.74

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	159 - 256	1.5e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
AccB7I	CCANNNNNTGG	2 cut(s)	146, 269
AciI	CCGC	4 cut(s)	153, 1001, 1046, 1158
AclWI	GGATC	3 cut(s)	599, 1043, 1056
AcoI	YGGCCR	2 cut(s)	154, 248
AcsI	RAATTY	1 cut(s)	751
AfaI	GTAC	6 cut(s)	131, 164, 179, 638, 781, 959
AfeI	AGCGCT	1 cut(s)	355
AfiI	CCNNNNNNNGG	4 cut(s)	146, 196, 269, 448
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	8 cut(s)	84, 170, 345, 384, 478, 490, 569, 976
AluBI	AGCT	8 cut(s)	174, 687, 800, 936, 1082, 1089, 1125, 1139
AluI	AGCT	8 cut(s)	174, 687, 800, 936, 1082, 1089, 1125, 1139
Alw26I	GTCTC	2 cut(s)	271, 1060
AlwI	GGATC	3 cut(s)	599, 1043, 1056
AlwNI	CAGNNNCTG	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	355
AoxI	GGCC	4 cut(s)	154, 198, 248, 1155
ApeKI	GCWGC	2 cut(s)	299, 356
ApoI	RAATTY	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	1155
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	436, 866, 1045
AsuII	TTCGAA	1 cut(s)	672
BamHI	GGATCC	1 cut(s)	1048
BbsI	GAAGAC	1 cut(s)	661
BbvI	GCAGC	2 cut(s)	286, 343
BccI	CCATC	6 cut(s)	21, 313, 385, 737, 1100, 1183
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	271, 1060
BfaI	CTAG	2 cut(s)	93, 998
BfoI	RGCGCY	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	767
BisI	GCNGC	5 cut(s)	154, 300, 357, 1002, 1158
BlsI	GCNGC	5 cut(s)	155, 301, 358, 1003, 1159
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	1155
BmiI	GGNNCC	1 cut(s)	1050
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	4 cut(s)	238, 588, 882, 1169
BmuI	ACTGGG	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	661
BpmI	CTGGAG	2 cut(s)	291, 728
Bpu14I	TTCGAA	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	1094
BpuMI	CCSGG	1 cut(s)	449
BsaJI	CCNNGG	3 cut(s)	245, 294, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 196, 269, 448
Bse1I	ACTGG	5 cut(s)	157, 263, 609, 644, 711
BseDI	CCNNGG	3 cut(s)	245, 294, 447
BseGI	GGATG	4 cut(s)	229, 324, 745, 1213
BseLI	CCNNNNNNNGG	4 cut(s)	146, 196, 269, 448
BseMII	CTCAG	2 cut(s)	218, 792
BseNI	ACTGG	5 cut(s)	157, 263, 609, 644, 711
BseRI	GAGGAG	2 cut(s)	227, 230
BseXI	GCAGC	2 cut(s)	286, 343
BseYI	CCCAGC	1 cut(s)	510
BsgI	GTGCAG	2 cut(s)	421, 699
BshFI	GGCC	4 cut(s)	156, 200, 250, 1157
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	4 cut(s)	146, 196, 269, 448
BsmAI	GTCTC	2 cut(s)	271, 1060
BsmBI	CGTCTC	1 cut(s)	1060
BsnI	GGCC	4 cut(s)	156, 200, 250, 1157
Bsp119I	TTCGAA	1 cut(s)	672
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	4 cut(s)	274, 307, 591, 1048
BspACI	CCGC	4 cut(s)	153, 1001, 1046, 1158
BspANI	GGCC	4 cut(s)	156, 200, 250, 1157
BspCNI	CTCAG	2 cut(s)	217, 793
BspHI	TCATGA	1 cut(s)	1229
BspLI	GGNNCC	1 cut(s)	1050
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	3 cut(s)	599, 1043, 1056
BspT104I	TTCGAA	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	5 cut(s)	157, 263, 609, 644, 711
BssECI	CCNNGG	3 cut(s)	245, 294, 447
BssMI	GATC	4 cut(s)	274, 307, 591, 1048
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	656, 854, 860, 1008
Bst6I	CTCTTC	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	957
BstBI	TTCGAA	1 cut(s)	672
BstC8I	GCNNGC	3 cut(s)	198, 227, 325
BstDEI	CTNAG	2 cut(s)	204, 801
BstF5I	GGATG	4 cut(s)	229, 324, 745, 1213
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	4 cut(s)	277, 310, 594, 1051
BstMAI	GTCTC	2 cut(s)	271, 1060
BstMBI	GATC	4 cut(s)	274, 307, 591, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	1052
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	286, 343
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	1048
BsuRI	GGCC	4 cut(s)	156, 200, 250, 1157
BtsCI	GGATG	4 cut(s)	229, 324, 745, 1213
BtsIMutI	CAGTG	1 cut(s)	1004
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	3 cut(s)	198, 227, 325
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	1 cut(s)	1229
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	1155
Csp6I	GTAC	6 cut(s)	130, 163, 178, 637, 780, 958
CviAII	CATG	6 cut(s)	46, 614, 625, 794, 812, 1230
CviQI	GTAC	6 cut(s)	130, 163, 178, 637, 780, 958
DdeI	CTNAG	2 cut(s)	204, 801
DpnI	GATC	4 cut(s)	276, 309, 593, 1050
DpnII	GATC	4 cut(s)	274, 307, 591, 1048
EaeI	YGGCCR	2 cut(s)	154, 248
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	200
Eco47III	AGCGCT	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	1060
FaeI	CATG	6 cut(s)	49, 617, 628, 797, 815, 1233
FatI	CATG	6 cut(s)	45, 613, 624, 793, 811, 1229
Fnu4HI	GCNGC	5 cut(s)	154, 300, 357, 1002, 1158
FokI	GGATG	4 cut(s)	216, 331, 752, 1220
Fsp4HI	GCNGC	5 cut(s)	154, 300, 357, 1002, 1158
FspBI	CTAG	2 cut(s)	93, 998
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	5 cut(s)	154, 300, 357, 1002, 1158
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	2 cut(s)	291, 728
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	156, 200, 250, 1157
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	6 cut(s)	49, 617, 628, 797, 815, 1233
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HindIII	AAGCTT	2 cut(s)	172, 685
HinfI	GANTC	5 cut(s)	290, 362, 410, 803, 1019
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	3 cut(s)	436, 866, 1045
Hpy166II	GTNNAC	1 cut(s)	960
Hpy188I	TCNGA	5 cut(s)	415, 467, 596, 1024, 1120
Hpy188III	TCNNGA	5 cut(s)	190, 270, 478, 942, 1230
Hpy8I	GTNNAC	1 cut(s)	960
HpyCH4III	ACNGT	4 cut(s)	656, 854, 860, 1008
HpyCH4V	TGCA	4 cut(s)	302, 438, 680, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1052
HpyF3I	CTNAG	2 cut(s)	204, 801
Hsp92II	CATG	6 cut(s)	49, 617, 628, 797, 815, 1233
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	274, 307, 591, 1048
LmnI	GCTCC	1 cut(s)	1094
Lsp1109I	GCAGC	2 cut(s)	286, 343
LweI	GCATC	4 cut(s)	238, 588, 882, 1169
MaeI	CTAG	2 cut(s)	93, 998
MaeIII	GTNAC	3 cut(s)	854, 860, 1033
MalI	GATC	4 cut(s)	276, 309, 593, 1050
MboI	GATC	4 cut(s)	274, 307, 591, 1048
MboII	GAAGA	7 cut(s)	502, 505, 661, 992, 995, 1025, 1198
MflI	RGATCY	1 cut(s)	1048
MluCI	AATT	5 cut(s)	84, 109, 751, 953, 989
MlyI	GAGTC	3 cut(s)	299, 356, 812
MmeI	TCCRAC	1 cut(s)	990
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	1 cut(s)	1206
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	1052
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	4 cut(s)	274, 307, 591, 1048
NlaIII	CATG	6 cut(s)	49, 617, 628, 797, 815, 1233
NlaIV	GGNNCC	1 cut(s)	1050
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	854, 1033
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	672
PagI	TCATGA	1 cut(s)	1229
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	410, 1019
PflFI	GACNNNGTC	2 cut(s)	1039, 1100
PflMI	CCANNNNNTGG	2 cut(s)	146, 269
PkrI	GCNGC	5 cut(s)	155, 301, 358, 1003, 1159
PleI	GAGTC	3 cut(s)	298, 356, 811
PpsI	GAGTC	3 cut(s)	298, 356, 811
PscI	ACATGT	1 cut(s)	793
PspFI	CCCAGC	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	1050
PspPI	GGNCC	1 cut(s)	1155
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	1048
PsyI	GACNNNGTC	2 cut(s)	1039, 1100
RsaI	GTAC	6 cut(s)	131, 164, 179, 638, 781, 959
RsaNI	GTAC	6 cut(s)	130, 163, 178, 637, 780, 958
RseI	CAYNNNNRTG	1 cut(s)	1206
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	5 cut(s)	154, 300, 357, 1002, 1158
Sau3AI	GATC	4 cut(s)	274, 307, 591, 1048
Sau96I	GGNCC	1 cut(s)	1155
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	3 cut(s)	299, 356, 812
ScrFI	CCNGG	1 cut(s)	449
SfaNI	GCATC	4 cut(s)	238, 588, 882, 1169
SfuI	TTCGAA	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	1206
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
Sse9I	AATT	5 cut(s)	84, 109, 751, 953, 989
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	4 cut(s)	153, 1001, 1046, 1158
SspMI	CTAG	2 cut(s)	93, 998
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	656, 854, 860, 1008
TaqI	TCGA	3 cut(s)	658, 672, 1095
TasI	AATT	5 cut(s)	84, 109, 751, 953, 989
TatI	WGTACW	3 cut(s)	162, 636, 957
TauI	GCSGC	3 cut(s)	156, 1004, 1160
TfiI	GAWTC	2 cut(s)	410, 1019
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	1 cut(s)	1011
TseFI	GTSAC	2 cut(s)	854, 1033
TseI	GCWGC	2 cut(s)	299, 356
Tsp45I	GTSAC	2 cut(s)	854, 1033
TspDTI	ATGAA	7 cut(s)	75, 470, 641, 828, 993, 1002, 1032
TspRI	CASTG	1 cut(s)	1011
Tth111I	GACNNNGTC	2 cut(s)	1039, 1100
Van91I	CCANNNNNTGG	2 cut(s)	146, 269
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	1 cut(s)	797
XspI	CTAG	2 cut(s)	93, 998
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.