B3 domain-containing transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 196 - 293 | 9.4e-13 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 369 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 452 |
| AciI | CCGC | 5 cut(s) | 581, 653, 824, 1217, 1459 |
| AclWI | GGATC | 1 cut(s) | 1337 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 1 cut(s) | 734 |
| AfaI | GTAC | 5 cut(s) | 137, 212, 415, 714, 900 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 173, 452, 730, 1096 |
| AflII | CTTAAG | 1 cut(s) | 1187 |
| AflIII | ACRYGT | 1 cut(s) | 901 |
| AgsI | TTSAA | 4 cut(s) | 13, 108, 739, 1301 |
| AjiI | CACGTC | 1 cut(s) | 495 |
| AjnI | CCWGG | 2 cut(s) | 172, 243 |
| AluBI | AGCT | 6 cut(s) | 541, 697, 817, 908, 1139, 1265 |
| AluI | AGCT | 6 cut(s) | 541, 697, 817, 908, 1139, 1265 |
| Alw26I | GTCTC | 7 cut(s) | 230, 288, 355, 377, 571, 1236, 1240 |
| AlwI | GGATC | 1 cut(s) | 1337 |
| AoxI | GGCC | 7 cut(s) | 126, 175, 219, 285, 999, 1098, 1432 |
| ApeKI | GCWGC | 4 cut(s) | 392, 401, 817, 1286 |
| ApoI | RAATTY | 1 cut(s) | 734 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1391, 1423 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 487 |
| AspLEI | GCGC | 1 cut(s) | 797 |
| AspS9I | GGNCC | 1 cut(s) | 617 |
| AsuC2I | CCSGG | 1 cut(s) | 149 |
| AsuHPI | GGTGA | 3 cut(s) | 476, 1107, 1113 |
| AsuII | TTCGAA | 1 cut(s) | 783 |
| AsuNHI | GCTAGC | 1 cut(s) | 1289 |
| AvaII | GGWCC | 1 cut(s) | 617 |
| BaeGI | GKGCMC | 1 cut(s) | 256 |
| BanII | GRGCYC | 1 cut(s) | 915 |
| BauI | CACGAG | 1 cut(s) | 477 |
| BbsI | GAAGAC | 1 cut(s) | 1158 |
| BbvI | GCAGC | 4 cut(s) | 388, 404, 804, 1273 |
| BccI | CCATC | 7 cut(s) | 28, 300, 349, 455, 971, 1327, 1384 |
| BciT130I | CCWGG | 2 cut(s) | 174, 245 |
| BciVI | GTATCC | 1 cut(s) | 246 |
| BcnI | CCSGG | 1 cut(s) | 149 |
| BcoDI | GTCTC | 7 cut(s) | 230, 288, 355, 377, 571, 1236, 1240 |
| BfaI | CTAG | 6 cut(s) | 161, 990, 1166, 1239, 1290, 1374 |
| BfmI | CTRYAG | 5 cut(s) | 402, 818, 951, 1246, 1332 |
| BfoI | RGCGCY | 1 cut(s) | 798 |
| BfrI | CTTAAG | 1 cut(s) | 1187 |
| BfuI | GTATCC | 1 cut(s) | 246 |
| BisI | GCNGC | 4 cut(s) | 393, 402, 818, 1287 |
| BlpI | GCTNAGC | 1 cut(s) | 909 |
| BlsI | GCNGC | 4 cut(s) | 394, 403, 819, 1288 |
| Bme1390I | CCNGG | 3 cut(s) | 149, 174, 245 |
| Bme18I | GGWCC | 1 cut(s) | 617 |
| BmgBI | CACGTC | 1 cut(s) | 495 |
| BmgT120I | GGNCC | 1 cut(s) | 617 |
| BmrFI | CCNGG | 3 cut(s) | 149, 174, 245 |
| BmsI | GCATC | 6 cut(s) | 307, 448, 699, 1057, 1210, 1431 |
| BmtI | GCTAGC | 1 cut(s) | 1293 |
| BpiI | GAAGAC | 1 cut(s) | 1158 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 902, 934 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 909 |
| Bpu14I | TTCGAA | 1 cut(s) | 783 |
| BpuEI | CTTGAG | 1 cut(s) | 980 |
| BpuMI | CCSGG | 1 cut(s) | 149 |
| Bsa29I | ATCGAT | 1 cut(s) | 1341 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1401 |
| BsaI | GGTCTC | 4 cut(s) | 230, 288, 571, 1240 |
| BsaJI | CCNNGG | 2 cut(s) | 1078, 1435 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 361, 391, 406, 436 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 173, 452, 730, 1096 |
| Bse118I | RCCGGY | 2 cut(s) | 221, 723 |
| Bse1I | ACTGG | 3 cut(s) | 89, 796, 896 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1401 |
| BseBI | CCWGG | 2 cut(s) | 174, 245 |
| BseCI | ATCGAT | 1 cut(s) | 1341 |
| BseDI | CCNNGG | 2 cut(s) | 1078, 1435 |
| BseGI | GGATG | 9 cut(s) | 311, 322, 439, 690, 856, 1225, 1319, 1395, 1446 |
| BseJI | GATNNNNATC | 1 cut(s) | 1401 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 173, 452, 730, 1096 |
| BseMII | CTCAG | 4 cut(s) | 146, 388, 422, 900 |
| BseNI | ACTGG | 3 cut(s) | 89, 796, 896 |
| BseRI | GAGGAG | 2 cut(s) | 382, 907 |
| BseSI | GKGCMC | 1 cut(s) | 256 |
| BseXI | GCAGC | 4 cut(s) | 388, 404, 804, 1273 |
| BseYI | CCCAGC | 1 cut(s) | 1311 |
| BsgI | GTGCAG | 1 cut(s) | 538 |
| BshFI | GGCC | 7 cut(s) | 128, 177, 221, 287, 1001, 1100, 1434 |
| BshVI | ATCGAT | 1 cut(s) | 1341 |
| BsiSI | CCGG | 4 cut(s) | 149, 222, 560, 724 |
| BslFI | GGGAC | 1 cut(s) | 959 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 173, 452, 730, 1096 |
| BsmAI | GTCTC | 7 cut(s) | 230, 288, 355, 377, 571, 1236, 1240 |
| BsmFI | GGGAC | 1 cut(s) | 959 |
| BsmI | GAATGC | 1 cut(s) | 860 |
| BsnI | GGCC | 7 cut(s) | 128, 177, 221, 287, 1001, 1100, 1434 |
| Bso31I | GGTCTC | 4 cut(s) | 230, 288, 571, 1240 |
| Bsp119I | TTCGAA | 1 cut(s) | 783 |
| Bsp1286I | GDGCHC | 2 cut(s) | 256, 915 |
| Bsp1407I | TGTACA | 1 cut(s) | 712 |
| Bsp143I | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 909 |
| BspACI | CCGC | 5 cut(s) | 581, 653, 824, 1217, 1459 |
| BspANI | GGCC | 7 cut(s) | 128, 177, 221, 287, 1001, 1100, 1434 |
| BspCNI | CTCAG | 4 cut(s) | 145, 387, 423, 901 |
| BspDI | ATCGAT | 1 cut(s) | 1341 |
| BspMAI | CTGCAG | 2 cut(s) | 406, 822 |
| BspOI | GCTAGC | 1 cut(s) | 1293 |
| BspPI | GGATC | 1 cut(s) | 1337 |
| BspT104I | TTCGAA | 1 cut(s) | 783 |
| BspTI | CTTAAG | 1 cut(s) | 1187 |
| BspTNI | GGTCTC | 4 cut(s) | 230, 288, 571, 1240 |
| BsrFI | RCCGGY | 2 cut(s) | 221, 723 |
| BsrGI | TGTACA | 1 cut(s) | 712 |
| BsrI | ACTGG | 3 cut(s) | 89, 796, 896 |
| BssAI | RCCGGY | 2 cut(s) | 221, 723 |
| BssECI | CCNNGG | 2 cut(s) | 1078, 1435 |
| BssMI | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| BssSI | CACGAG | 1 cut(s) | 477 |
| BssT1I | CCWWGG | 2 cut(s) | 1078, 1435 |
| Bst2BI | CACGAG | 1 cut(s) | 477 |
| Bst2UI | CCWGG | 2 cut(s) | 174, 245 |
| Bst4CI | ACNGT | 4 cut(s) | 75, 156, 215, 703 |
| Bst6I | CTCTTC | 1 cut(s) | 925 |
| BstAFI | CTTAAG | 1 cut(s) | 1187 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 187 |
| BstAUI | TGTACA | 1 cut(s) | 712 |
| BstBI | TTCGAA | 1 cut(s) | 783 |
| BstC8I | GCNNGC | 8 cut(s) | 179, 192, 289, 437, 557, 822, 1141, 1291 |
| BstDEI | CTNAG | 4 cut(s) | 132, 374, 431, 909 |
| BstF5I | GGATG | 9 cut(s) | 311, 322, 439, 690, 856, 1225, 1319, 1395, 1446 |
| BstH2I | RGCGCY | 1 cut(s) | 798 |
| BstHHI | GCGC | 1 cut(s) | 797 |
| BstKTI | GATC | 6 cut(s) | 958, 972, 1198, 1345, 1405, 1414 |
| BstMAI | GTCTC | 7 cut(s) | 230, 288, 355, 377, 571, 1236, 1240 |
| BstMBI | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 187, 398, 401, 1431 |
| BstNI | CCWGG | 2 cut(s) | 174, 245 |
| BstNSI | RCATGY | 2 cut(s) | 194, 905 |
| BstSCI | CCNGG | 3 cut(s) | 147, 172, 243 |
| BstSFI | CTRYAG | 5 cut(s) | 402, 818, 951, 1246, 1332 |
| BstSLI | GKGCMC | 1 cut(s) | 256 |
| BstV1I | GCAGC | 4 cut(s) | 388, 404, 804, 1273 |
| BstV2I | GAAGAC | 1 cut(s) | 1158 |
| Bsu15I | ATCGAT | 1 cut(s) | 1341 |
| BsuI | GTATCC | 1 cut(s) | 246 |
| BsuRI | GGCC | 7 cut(s) | 128, 177, 221, 287, 1001, 1100, 1434 |
| BsuTUI | ATCGAT | 1 cut(s) | 1341 |
| BtgZI | GCGATG | 1 cut(s) | 1267 |
| BtrI | CACGTC | 1 cut(s) | 495 |
| BtsCI | GGATG | 9 cut(s) | 311, 322, 439, 690, 856, 1225, 1319, 1395, 1446 |
| BtsIMutI | CAGTG | 3 cut(s) | 96, 256, 428 |
| Cac8I | GCNNGC | 8 cut(s) | 179, 192, 289, 437, 557, 822, 1141, 1291 |
| CfoI | GCGC | 1 cut(s) | 797 |
| Cfr10I | RCCGGY | 2 cut(s) | 221, 723 |
| Cfr13I | GGNCC | 1 cut(s) | 617 |
| ClaI | ATCGAT | 1 cut(s) | 1341 |
| Csp6I | GTAC | 5 cut(s) | 136, 211, 414, 713, 899 |
| CviAII | CATG | 4 cut(s) | 191, 452, 902, 1256 |
| CviQI | GTAC | 5 cut(s) | 136, 211, 414, 713, 899 |
| DdeI | CTNAG | 4 cut(s) | 132, 374, 431, 909 |
| DpnI | GATC | 6 cut(s) | 957, 971, 1197, 1344, 1404, 1413 |
| DpnII | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 369 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 369 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 925 |
| EarI | CTCTTC | 1 cut(s) | 925 |
| Eco130I | CCWWGG | 2 cut(s) | 1078, 1435 |
| Eco147I | AGGCCT | 2 cut(s) | 177, 1434 |
| Eco24I | GRGCYC | 1 cut(s) | 915 |
| Eco31I | GGTCTC | 4 cut(s) | 230, 288, 571, 1240 |
| Eco47I | GGWCC | 1 cut(s) | 617 |
| EcoRI | GAATTC | 1 cut(s) | 734 |
| EcoRII | CCWGG | 2 cut(s) | 172, 243 |
| EcoT14I | CCWWGG | 2 cut(s) | 1078, 1435 |
| EcoT38I | GRGCYC | 1 cut(s) | 915 |
| ErhI | CCWWGG | 2 cut(s) | 1078, 1435 |
| FaeI | CATG | 4 cut(s) | 194, 455, 905, 1259 |
| FaqI | GGGAC | 1 cut(s) | 959 |
| FatI | CATG | 4 cut(s) | 190, 451, 901, 1255 |
| FauI | CCCGC | 1 cut(s) | 817 |
| FauNDI | CATATG | 2 cut(s) | 231, 1472 |
| Fnu4HI | GCNGC | 4 cut(s) | 393, 402, 818, 1287 |
| FokI | GGATG | 9 cut(s) | 318, 329, 426, 677, 863, 1232, 1306, 1402, 1453 |
| FriOI | GRGCYC | 1 cut(s) | 915 |
| Fsp4HI | GCNGC | 4 cut(s) | 393, 402, 818, 1287 |
| FspBI | CTAG | 6 cut(s) | 161, 990, 1166, 1239, 1290, 1374 |
| GlaI | GCGC | 1 cut(s) | 796 |
| GluI | GCNGC | 4 cut(s) | 393, 402, 818, 1287 |
| GsaI | CCCAGC | 1 cut(s) | 1315 |
| HaeII | RGCGCY | 1 cut(s) | 798 |
| HaeIII | GGCC | 7 cut(s) | 128, 177, 221, 287, 1001, 1100, 1434 |
| HapII | CCGG | 4 cut(s) | 149, 222, 560, 724 |
| HhaI | GCGC | 1 cut(s) | 797 |
| Hin1II | CATG | 4 cut(s) | 194, 455, 905, 1259 |
| Hin6I | GCGC | 1 cut(s) | 795 |
| HinP1I | GCGC | 1 cut(s) | 795 |
| HincII | GTYRAC | 1 cut(s) | 1456 |
| HindII | GTYRAC | 1 cut(s) | 1456 |
| HinfI | GANTC | 3 cut(s) | 370, 483, 1338 |
| HpaII | CCGG | 4 cut(s) | 149, 222, 560, 724 |
| HphI | GGTGA | 3 cut(s) | 476, 1107, 1113 |
| Hpy166II | GTNNAC | 3 cut(s) | 78, 86, 1456 |
| Hpy188I | TCNGA | 2 cut(s) | 679, 707 |
| Hpy188III | TCNNGA | 8 cut(s) | 276, 303, 504, 967, 1166, 1199, 1239, 1415 |
| Hpy8I | GTNNAC | 3 cut(s) | 78, 86, 1456 |
| HpyAV | CCTTC | 7 cut(s) | 114, 132, 586, 674, 680, 1128, 1356 |
| HpyCH4III | ACNGT | 4 cut(s) | 75, 156, 215, 703 |
| HpyCH4IV | ACGT | 1 cut(s) | 494 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 187, 398, 401, 1431 |
| HpyF3I | CTNAG | 4 cut(s) | 132, 374, 431, 909 |
| HpySE526I | ACGT | 1 cut(s) | 494 |
| Hsp92II | CATG | 4 cut(s) | 194, 455, 905, 1259 |
| HspAI | GCGC | 1 cut(s) | 795 |
| Kzo9I | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| LmnI | GCTCC | 1 cut(s) | 1449 |
| Lsp1109I | GCAGC | 4 cut(s) | 388, 404, 804, 1273 |
| LweI | GCATC | 6 cut(s) | 307, 448, 699, 1057, 1210, 1431 |
| MaeI | CTAG | 6 cut(s) | 161, 990, 1166, 1239, 1290, 1374 |
| MaeII | ACGT | 1 cut(s) | 494 |
| MaeIII | GTNAC | 1 cut(s) | 1085 |
| MalI | GATC | 6 cut(s) | 957, 971, 1197, 1344, 1404, 1413 |
| MboI | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| MboII | GAAGA | 3 cut(s) | 912, 1104, 1163 |
| MhlI | GDGCHC | 2 cut(s) | 256, 915 |
| MluCI | AATT | 4 cut(s) | 182, 572, 734, 1157 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MmeI | TCCRAC | 4 cut(s) | 595, 702, 744, 1302 |
| MroXI | GAANNNNTTC | 1 cut(s) | 487 |
| MseI | TTAA | 3 cut(s) | 588, 599, 1188 |
| MslI | CAYNNNNRTG | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 1 cut(s) | 697 |
| MspCI | CTTAAG | 1 cut(s) | 1187 |
| MspI | CCGG | 4 cut(s) | 149, 222, 560, 724 |
| MspR9I | CCNGG | 3 cut(s) | 149, 174, 245 |
| Mva1269I | GAATGC | 1 cut(s) | 860 |
| MvaI | CCWGG | 2 cut(s) | 174, 245 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 187, 398, 401, 1431 |
| NciI | CCSGG | 1 cut(s) | 149 |
| NdeI | CATATG | 2 cut(s) | 231, 1472 |
| NdeII | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| NheI | GCTAGC | 1 cut(s) | 1289 |
| NlaIII | CATG | 4 cut(s) | 194, 455, 905, 1259 |
| NmeAIII | GCCGAG | 1 cut(s) | 317 |
| NspI | RCATGY | 2 cut(s) | 194, 905 |
| NspV | TTCGAA | 1 cut(s) | 783 |
| PaeI | GCATGC | 1 cut(s) | 194 |
| PceI | AGGCCT | 2 cut(s) | 177, 1434 |
| PciI | ACATGT | 1 cut(s) | 901 |
| PctI | GAATGC | 1 cut(s) | 860 |
| PdmI | GAANNNNTTC | 1 cut(s) | 487 |
| PfeI | GAWTC | 2 cut(s) | 483, 1338 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 452 |
| PkrI | GCNGC | 4 cut(s) | 394, 403, 819, 1288 |
| PleI | GAGTC | 1 cut(s) | 378 |
| PpsI | GAGTC | 1 cut(s) | 378 |
| PscI | ACATGT | 1 cut(s) | 901 |
| Psp6I | CCWGG | 2 cut(s) | 172, 243 |
| PspFI | CCCAGC | 1 cut(s) | 1311 |
| PspGI | CCWGG | 2 cut(s) | 172, 243 |
| PspPI | GGNCC | 1 cut(s) | 617 |
| PstI | CTGCAG | 2 cut(s) | 406, 822 |
| PvuII | CAGCTG | 1 cut(s) | 697 |
| RsaI | GTAC | 5 cut(s) | 137, 212, 415, 714, 900 |
| RsaNI | GTAC | 5 cut(s) | 136, 211, 414, 713, 899 |
| RseI | CAYNNNNRTG | 1 cut(s) | 456 |
| SaqAI | TTAA | 3 cut(s) | 588, 599, 1188 |
| SatI | GCNGC | 4 cut(s) | 393, 402, 818, 1287 |
| Sau3AI | GATC | 6 cut(s) | 955, 969, 1195, 1342, 1402, 1411 |
| Sau96I | GGNCC | 1 cut(s) | 617 |
| SchI | GAGTC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 3 cut(s) | 149, 174, 245 |
| SduI | GDGCHC | 2 cut(s) | 256, 915 |
| SfaNI | GCATC | 6 cut(s) | 307, 448, 699, 1057, 1210, 1431 |
| SfcI | CTRYAG | 5 cut(s) | 402, 818, 951, 1246, 1332 |
| SfuI | TTCGAA | 1 cut(s) | 783 |
| SinI | GGWCC | 1 cut(s) | 617 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 456 |
| SmlI | CTYRAG | 2 cut(s) | 995, 1187 |
| SmoI | CTYRAG | 2 cut(s) | 995, 1187 |
| SphI | GCATGC | 1 cut(s) | 194 |
| Sse9I | AATT | 4 cut(s) | 182, 572, 734, 1157 |
| SseBI | AGGCCT | 2 cut(s) | 177, 1434 |
| SsiI | CCGC | 5 cut(s) | 581, 653, 824, 1217, 1459 |
| SspMI | CTAG | 6 cut(s) | 161, 990, 1166, 1239, 1290, 1374 |
| StuI | AGGCCT | 2 cut(s) | 177, 1434 |
| StyD4I | CCNGG | 3 cut(s) | 147, 172, 243 |
| StyI | CCWWGG | 2 cut(s) | 1078, 1435 |
| TaaI | ACNGT | 4 cut(s) | 75, 156, 215, 703 |
| TaiI | ACGT | 1 cut(s) | 497 |
| TaqI | TCGA | 3 cut(s) | 783, 1341, 1416 |
| TasI | AATT | 4 cut(s) | 182, 572, 734, 1157 |
| TatI | WGTACW | 4 cut(s) | 135, 413, 712, 898 |
| TfiI | GAWTC | 2 cut(s) | 483, 1338 |
| Tru1I | TTAA | 3 cut(s) | 588, 599, 1188 |
| Tru9I | TTAA | 3 cut(s) | 588, 599, 1188 |
| TscAI | CASTG | 3 cut(s) | 96, 256, 435 |
| TseI | GCWGC | 4 cut(s) | 392, 401, 817, 1286 |
| TspDTI | ATGAA | 3 cut(s) | 440, 867, 1338 |
| TspGWI | ACGGA | 1 cut(s) | 865 |
| TspRI | CASTG | 3 cut(s) | 96, 256, 435 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 452 |
| Vha464I | CTTAAG | 1 cut(s) | 1187 |
| VpaK11BI | GGWCC | 1 cut(s) | 617 |
| XapI | RAATTY | 1 cut(s) | 734 |
| XbaI | TCTAGA | 2 cut(s) | 1165, 1238 |
| XceI | RCATGY | 2 cut(s) | 194, 905 |
| XmnI | GAANNNNTTC | 1 cut(s) | 487 |
| XspI | CTAG | 6 cut(s) | 161, 990, 1166, 1239, 1290, 1374 |