MD00G1115600.v1.1

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
24544877 .. 24549632
4756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1115600.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGAGAACTTCAACCCACCATCTATCCCCTCTACAACCACCATAACCTCTGCTCACAAGACAAATAACTCACAGTCCACTTGTGAACCAGTGAGTTGTTTGCCTTCAACTACTTGTAGTCCTTCGGCCACTCAGTACAGGTATTACCCGGCACAGTATCTAGCACCAAATCCAGGCCTGCAATTCCTGCATGCAAATAATCAATACCCGTACCGTCAGGCCGGTCTCCATATGTATCCATTCCTGGTCAGTGCCCAACCGAATATGGTTCTTTCCAGAGAACAGGCCAGCCGAGACCAATCAGGATGGATATTGGATGCACTTATGTCCAAGTCTGCAAGAAATGAGAGAAAGATGGCGAGACAGAGGAGTCTCAGTTTGAGCAGAAACGCAGCCAACGCTGCAGTTTCCTGTACTTGTTCTCCCCCACTGAGCAGGCATCCTCCATTTCATGGGAATGATGGTGATGATGATACTCGTGGAATCATTTCCACGTCATCATCTGGAAATGGTGCTGATTTGCAGAACACCAAAGAACAGCTCTACTCGTTCTGCACGCCGGATAACAAGAAATTGAGACCGCTTTTTAAGAAGGAGTTAAAGAATAGTGATGTTGGACCTTTGGGTAGGATTATACTACCAAAGAAAGAAGCGGAAAATAACCTTCCAATGCTCTCCGACAGAGAAGGCATCCAGCTGACTGTCAGAGATGTACATTCCAACCGGCATTGGGAATTCAAATACAAGTTCTGGTCAAATAACAGAAGCAGAATGTATGTGTTCGAATATACTGGCGCTTTTGTTAGGAAAAAAAAGCTGCAGGCGGGAGATTGCATTTATCTTTATGAGGATGAATGCAAGAACCTCTACATCTCCGTAGAAAAGGTGCAAAGACCAGTACATGTAGCTGAGCCCTCCTCTTCTAAACAGCGTAATACTACAACTAACCCTACAGATCAAACCATCAAGATCGTCCCCAACATCAACACTAGCCTCAAGGCCAACACCACCGACAACAACAAAACTAACACCAACACCAACACCAACGCCAAAACTCCCAACACCGATGCCAAAACCCTTGGAAGTAACCCCTATGTGGCCTCAAACTTATCTTCACCTTCACCCTATACCTATGTAGCTGGCAACAAAGAAGACGAATTATCTCTAGAACAACTTGTGGAACAACTTAAGCAAGATCAAGAAACTAACATCTTTGCGGATGCTTTGTCTATGGTCTCTAGAGACTATAGGGAACATGAGGAAGCTACTGCTTTGTCCAACATCGCTGCTAGCCATATTGAAACATCTACCCAGCCACCATCCACATTGGCTGTAGGAATCGATCCTTCATCGTCATCATCATCATCACAGACTAGAGCAACAATGAGGATGGTAGATGACGATCACTTTGATCTCGATGACTGCTACAAAGGCCTTGGGATGCTCCCAGAAGTCAACCGCTACAAATACATATGA

Protein Analysis

492

Amino Acids

54.87

Weight (kDa)

7.97

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 196 - 293 9.4e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 452
AciI CCGC 5 cut(s) 581, 653, 824, 1217, 1459
AclWI GGATC 1 cut(s) 1337
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 734
AfaI GTAC 5 cut(s) 137, 212, 415, 714, 900
AfiI CCNNNNNNNGG 4 cut(s) 173, 452, 730, 1096
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 1 cut(s) 901
AgsI TTSAA 4 cut(s) 13, 108, 739, 1301
AjiI CACGTC 1 cut(s) 495
AjnI CCWGG 2 cut(s) 172, 243
AluBI AGCT 6 cut(s) 541, 697, 817, 908, 1139, 1265
AluI AGCT 6 cut(s) 541, 697, 817, 908, 1139, 1265
Alw26I GTCTC 7 cut(s) 230, 288, 355, 377, 571, 1236, 1240
AlwI GGATC 1 cut(s) 1337
AoxI GGCC 7 cut(s) 126, 175, 219, 285, 999, 1098, 1432
ApeKI GCWGC 4 cut(s) 392, 401, 817, 1286
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 1391, 1423
Asp700I GAANNNNTTC 1 cut(s) 487
AspLEI GCGC 1 cut(s) 797
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 476, 1107, 1113
AsuII TTCGAA 1 cut(s) 783
AsuNHI GCTAGC 1 cut(s) 1289
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 915
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 1158
BbvI GCAGC 4 cut(s) 388, 404, 804, 1273
BccI CCATC 7 cut(s) 28, 300, 349, 455, 971, 1327, 1384
BciT130I CCWGG 2 cut(s) 174, 245
BciVI GTATCC 1 cut(s) 246
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 7 cut(s) 230, 288, 355, 377, 571, 1236, 1240
BfaI CTAG 6 cut(s) 161, 990, 1166, 1239, 1290, 1374
BfmI CTRYAG 5 cut(s) 402, 818, 951, 1246, 1332
BfoI RGCGCY 1 cut(s) 798
BfrI CTTAAG 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 4 cut(s) 393, 402, 818, 1287
BlpI GCTNAGC 1 cut(s) 909
BlsI GCNGC 4 cut(s) 394, 403, 819, 1288
Bme1390I CCNGG 3 cut(s) 149, 174, 245
Bme18I GGWCC 1 cut(s) 617
BmgBI CACGTC 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 617
BmrFI CCNGG 3 cut(s) 149, 174, 245
BmsI GCATC 6 cut(s) 307, 448, 699, 1057, 1210, 1431
BmtI GCTAGC 1 cut(s) 1293
BpiI GAAGAC 1 cut(s) 1158
BplI GAGNNNNNCTC 2 cut(s) 902, 934
Bpu1102I GCTNAGC 1 cut(s) 909
Bpu14I TTCGAA 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 980
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 1341
BsaBI GATNNNNATC 1 cut(s) 1401
BsaI GGTCTC 4 cut(s) 230, 288, 571, 1240
BsaJI CCNNGG 2 cut(s) 1078, 1435
BsaXI ACNNNNNCTCC 4 cut(s) 361, 391, 406, 436
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 452, 730, 1096
Bse118I RCCGGY 2 cut(s) 221, 723
Bse1I ACTGG 3 cut(s) 89, 796, 896
Bse8I GATNNNNATC 1 cut(s) 1401
BseBI CCWGG 2 cut(s) 174, 245
BseCI ATCGAT 1 cut(s) 1341
BseDI CCNNGG 2 cut(s) 1078, 1435
BseGI GGATG 9 cut(s) 311, 322, 439, 690, 856, 1225, 1319, 1395, 1446
BseJI GATNNNNATC 1 cut(s) 1401
BseLI CCNNNNNNNGG 4 cut(s) 173, 452, 730, 1096
BseMII CTCAG 4 cut(s) 146, 388, 422, 900
BseNI ACTGG 3 cut(s) 89, 796, 896
BseRI GAGGAG 2 cut(s) 382, 907
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 4 cut(s) 388, 404, 804, 1273
BseYI CCCAGC 1 cut(s) 1311
BsgI GTGCAG 1 cut(s) 538
BshFI GGCC 7 cut(s) 128, 177, 221, 287, 1001, 1100, 1434
BshVI ATCGAT 1 cut(s) 1341
BsiSI CCGG 4 cut(s) 149, 222, 560, 724
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 4 cut(s) 173, 452, 730, 1096
BsmAI GTCTC 7 cut(s) 230, 288, 355, 377, 571, 1236, 1240
BsmFI GGGAC 1 cut(s) 959
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 7 cut(s) 128, 177, 221, 287, 1001, 1100, 1434
Bso31I GGTCTC 4 cut(s) 230, 288, 571, 1240
Bsp119I TTCGAA 1 cut(s) 783
Bsp1286I GDGCHC 2 cut(s) 256, 915
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
Bsp1720I GCTNAGC 1 cut(s) 909
BspACI CCGC 5 cut(s) 581, 653, 824, 1217, 1459
BspANI GGCC 7 cut(s) 128, 177, 221, 287, 1001, 1100, 1434
BspCNI CTCAG 4 cut(s) 145, 387, 423, 901
BspDI ATCGAT 1 cut(s) 1341
BspMAI CTGCAG 2 cut(s) 406, 822
BspOI GCTAGC 1 cut(s) 1293
BspPI GGATC 1 cut(s) 1337
BspT104I TTCGAA 1 cut(s) 783
BspTI CTTAAG 1 cut(s) 1187
BspTNI GGTCTC 4 cut(s) 230, 288, 571, 1240
BsrFI RCCGGY 2 cut(s) 221, 723
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 3 cut(s) 89, 796, 896
BssAI RCCGGY 2 cut(s) 221, 723
BssECI CCNNGG 2 cut(s) 1078, 1435
BssMI GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 1078, 1435
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 174, 245
Bst4CI ACNGT 4 cut(s) 75, 156, 215, 703
Bst6I CTCTTC 1 cut(s) 925
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 783
BstC8I GCNNGC 8 cut(s) 179, 192, 289, 437, 557, 822, 1141, 1291
BstDEI CTNAG 4 cut(s) 132, 374, 431, 909
BstF5I GGATG 9 cut(s) 311, 322, 439, 690, 856, 1225, 1319, 1395, 1446
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 1 cut(s) 797
BstKTI GATC 6 cut(s) 958, 972, 1198, 1345, 1405, 1414
BstMAI GTCTC 7 cut(s) 230, 288, 355, 377, 571, 1236, 1240
BstMBI GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
BstMWI GCNNNNNNNGC 4 cut(s) 187, 398, 401, 1431
BstNI CCWGG 2 cut(s) 174, 245
BstNSI RCATGY 2 cut(s) 194, 905
BstSCI CCNGG 3 cut(s) 147, 172, 243
BstSFI CTRYAG 5 cut(s) 402, 818, 951, 1246, 1332
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 388, 404, 804, 1273
BstV2I GAAGAC 1 cut(s) 1158
Bsu15I ATCGAT 1 cut(s) 1341
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 7 cut(s) 128, 177, 221, 287, 1001, 1100, 1434
BsuTUI ATCGAT 1 cut(s) 1341
BtgZI GCGATG 1 cut(s) 1267
BtrI CACGTC 1 cut(s) 495
BtsCI GGATG 9 cut(s) 311, 322, 439, 690, 856, 1225, 1319, 1395, 1446
BtsIMutI CAGTG 3 cut(s) 96, 256, 428
Cac8I GCNNGC 8 cut(s) 179, 192, 289, 437, 557, 822, 1141, 1291
CfoI GCGC 1 cut(s) 797
Cfr10I RCCGGY 2 cut(s) 221, 723
Cfr13I GGNCC 1 cut(s) 617
ClaI ATCGAT 1 cut(s) 1341
Csp6I GTAC 5 cut(s) 136, 211, 414, 713, 899
CviAII CATG 4 cut(s) 191, 452, 902, 1256
CviQI GTAC 5 cut(s) 136, 211, 414, 713, 899
DdeI CTNAG 4 cut(s) 132, 374, 431, 909
DpnI GATC 6 cut(s) 957, 971, 1197, 1344, 1404, 1413
DpnII GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
DrdI GACNNNNNNGTC 1 cut(s) 369
DseDI GACNNNNNNGTC 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 925
EarI CTCTTC 1 cut(s) 925
Eco130I CCWWGG 2 cut(s) 1078, 1435
Eco147I AGGCCT 2 cut(s) 177, 1434
Eco24I GRGCYC 1 cut(s) 915
Eco31I GGTCTC 4 cut(s) 230, 288, 571, 1240
Eco47I GGWCC 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 172, 243
EcoT14I CCWWGG 2 cut(s) 1078, 1435
EcoT38I GRGCYC 1 cut(s) 915
ErhI CCWWGG 2 cut(s) 1078, 1435
FaeI CATG 4 cut(s) 194, 455, 905, 1259
FaqI GGGAC 1 cut(s) 959
FatI CATG 4 cut(s) 190, 451, 901, 1255
FauI CCCGC 1 cut(s) 817
FauNDI CATATG 2 cut(s) 231, 1472
Fnu4HI GCNGC 4 cut(s) 393, 402, 818, 1287
FokI GGATG 9 cut(s) 318, 329, 426, 677, 863, 1232, 1306, 1402, 1453
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 4 cut(s) 393, 402, 818, 1287
FspBI CTAG 6 cut(s) 161, 990, 1166, 1239, 1290, 1374
GlaI GCGC 1 cut(s) 796
GluI GCNGC 4 cut(s) 393, 402, 818, 1287
GsaI CCCAGC 1 cut(s) 1315
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 7 cut(s) 128, 177, 221, 287, 1001, 1100, 1434
HapII CCGG 4 cut(s) 149, 222, 560, 724
HhaI GCGC 1 cut(s) 797
Hin1II CATG 4 cut(s) 194, 455, 905, 1259
Hin6I GCGC 1 cut(s) 795
HinP1I GCGC 1 cut(s) 795
HincII GTYRAC 1 cut(s) 1456
HindII GTYRAC 1 cut(s) 1456
HinfI GANTC 3 cut(s) 370, 483, 1338
HpaII CCGG 4 cut(s) 149, 222, 560, 724
HphI GGTGA 3 cut(s) 476, 1107, 1113
Hpy166II GTNNAC 3 cut(s) 78, 86, 1456
Hpy188I TCNGA 2 cut(s) 679, 707
Hpy188III TCNNGA 8 cut(s) 276, 303, 504, 967, 1166, 1199, 1239, 1415
Hpy8I GTNNAC 3 cut(s) 78, 86, 1456
HpyAV CCTTC 7 cut(s) 114, 132, 586, 674, 680, 1128, 1356
HpyCH4III ACNGT 4 cut(s) 75, 156, 215, 703
HpyCH4IV ACGT 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 398, 401, 1431
HpyF3I CTNAG 4 cut(s) 132, 374, 431, 909
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 4 cut(s) 194, 455, 905, 1259
HspAI GCGC 1 cut(s) 795
Kzo9I GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
LmnI GCTCC 1 cut(s) 1449
Lsp1109I GCAGC 4 cut(s) 388, 404, 804, 1273
LweI GCATC 6 cut(s) 307, 448, 699, 1057, 1210, 1431
MaeI CTAG 6 cut(s) 161, 990, 1166, 1239, 1290, 1374
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 1085
MalI GATC 6 cut(s) 957, 971, 1197, 1344, 1404, 1413
MboI GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
MboII GAAGA 3 cut(s) 912, 1104, 1163
MhlI GDGCHC 2 cut(s) 256, 915
MluCI AATT 4 cut(s) 182, 572, 734, 1157
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 4 cut(s) 595, 702, 744, 1302
MroXI GAANNNNTTC 1 cut(s) 487
MseI TTAA 3 cut(s) 588, 599, 1188
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 697
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 4 cut(s) 149, 222, 560, 724
MspR9I CCNGG 3 cut(s) 149, 174, 245
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 2 cut(s) 174, 245
MwoI GCNNNNNNNGC 4 cut(s) 187, 398, 401, 1431
NciI CCSGG 1 cut(s) 149
NdeI CATATG 2 cut(s) 231, 1472
NdeII GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
NheI GCTAGC 1 cut(s) 1289
NlaIII CATG 4 cut(s) 194, 455, 905, 1259
NmeAIII GCCGAG 1 cut(s) 317
NspI RCATGY 2 cut(s) 194, 905
NspV TTCGAA 1 cut(s) 783
PaeI GCATGC 1 cut(s) 194
PceI AGGCCT 2 cut(s) 177, 1434
PciI ACATGT 1 cut(s) 901
PctI GAATGC 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 483, 1338
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 4 cut(s) 394, 403, 819, 1288
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PscI ACATGT 1 cut(s) 901
Psp6I CCWGG 2 cut(s) 172, 243
PspFI CCCAGC 1 cut(s) 1311
PspGI CCWGG 2 cut(s) 172, 243
PspPI GGNCC 1 cut(s) 617
PstI CTGCAG 2 cut(s) 406, 822
PvuII CAGCTG 1 cut(s) 697
RsaI GTAC 5 cut(s) 137, 212, 415, 714, 900
RsaNI GTAC 5 cut(s) 136, 211, 414, 713, 899
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 3 cut(s) 588, 599, 1188
SatI GCNGC 4 cut(s) 393, 402, 818, 1287
Sau3AI GATC 6 cut(s) 955, 969, 1195, 1342, 1402, 1411
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 3 cut(s) 149, 174, 245
SduI GDGCHC 2 cut(s) 256, 915
SfaNI GCATC 6 cut(s) 307, 448, 699, 1057, 1210, 1431
SfcI CTRYAG 5 cut(s) 402, 818, 951, 1246, 1332
SfuI TTCGAA 1 cut(s) 783
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 995, 1187
SmoI CTYRAG 2 cut(s) 995, 1187
SphI GCATGC 1 cut(s) 194
Sse9I AATT 4 cut(s) 182, 572, 734, 1157
SseBI AGGCCT 2 cut(s) 177, 1434
SsiI CCGC 5 cut(s) 581, 653, 824, 1217, 1459
SspMI CTAG 6 cut(s) 161, 990, 1166, 1239, 1290, 1374
StuI AGGCCT 2 cut(s) 177, 1434
StyD4I CCNGG 3 cut(s) 147, 172, 243
StyI CCWWGG 2 cut(s) 1078, 1435
TaaI ACNGT 4 cut(s) 75, 156, 215, 703
TaiI ACGT 1 cut(s) 497
TaqI TCGA 3 cut(s) 783, 1341, 1416
TasI AATT 4 cut(s) 182, 572, 734, 1157
TatI WGTACW 4 cut(s) 135, 413, 712, 898
TfiI GAWTC 2 cut(s) 483, 1338
Tru1I TTAA 3 cut(s) 588, 599, 1188
Tru9I TTAA 3 cut(s) 588, 599, 1188
TscAI CASTG 3 cut(s) 96, 256, 435
TseI GCWGC 4 cut(s) 392, 401, 817, 1286
TspDTI ATGAA 3 cut(s) 440, 867, 1338
TspGWI ACGGA 1 cut(s) 865
TspRI CASTG 3 cut(s) 96, 256, 435
Van91I CCANNNNNTGG 1 cut(s) 452
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 1 cut(s) 734
XbaI TCTAGA 2 cut(s) 1165, 1238
XceI RCATGY 2 cut(s) 194, 905
XmnI GAANNNNTTC 1 cut(s) 487
XspI CTAG 6 cut(s) 161, 990, 1166, 1239, 1290, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.