Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

5740020 .. 5741015

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGCTTCTTCAAGGTTGGCAGTAGGGAAGGATCCATCTAGTGCTGTTTCTGAAACGCCGAATGAACAATACATCTACTCATTCTGCACGCCGGATAACAAGAAACTGAGAATGTTGTTCGAAAAACAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTCTTTCAACCCAAGAATGGGGTTTGAAATACAAATACTGGTCAAATAACAAAAGCCGAATGTATGTGCTTGAAAACACAGGAGACTTTGTTAGGCAATCTGGAGTGGAGGTGGGAGATAGCATTCATCTTTACGAAGATGAATGCAAGAATATTGTGAGTTCTACTCTCCTTAGTTTTCTTCTTTGGATAAAGATGAGCATTTTGATTTTTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

173

Amino Acids

19.77

Weight (kDa)

9.58

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	59 - 151	2.9e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	54, 56
AclWI	GGATC	3 cut(s)	83, 96, 214
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	318, 319
AgsI	TTSAA	4 cut(s)	69, 309, 328, 374
AluBI	AGCT	3 cut(s)	44, 187, 286
AluI	AGCT	3 cut(s)	44, 187, 286
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	3 cut(s)	83, 96, 214
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	44, 59
ApoI	RAATTY	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	31, 46
BccI	CCATC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	4 cut(s)	45, 54, 57, 60
BlsI	GCNGC	4 cut(s)	46, 55, 58, 61
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpmI	CTGGAG	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 396, 405, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 319
Bse1I	ACTGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	318, 319
BseMII	CTCAG	3 cut(s)	20, 155, 278
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	31, 46
BsgI	GTGCAG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	149, 217
BslI	CCNNNNNNNGG	2 cut(s)	318, 319
BsmAI	GTCTC	1 cut(s)	378
BsmI	GAATGC	2 cut(s)	423, 449
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	88, 206
BspACI	CCGC	2 cut(s)	54, 56
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	3 cut(s)	21, 156, 279
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	83, 96, 214
BspT104I	TTCGAA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	88, 206
BssSI	CACGAG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	4 cut(s)	29, 164, 287, 473
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	91, 209
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	88, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 53, 59
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	31, 46
BstX2I	RGATCY	2 cut(s)	88, 206
BstYI	RGATCY	2 cut(s)	88, 206
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	214
Cfr42I	CCGCGG	1 cut(s)	57
CviJI	RGCY	8 cut(s)	44, 59, 187, 216, 242, 261, 286, 357
CviKI_1	RGCY	8 cut(s)	44, 59, 187, 216, 242, 261, 286, 357
DdeI	CTNAG	4 cut(s)	29, 164, 287, 473
DpnI	GATC	2 cut(s)	90, 208
DpnII	GATC	2 cut(s)	88, 206
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	209
FaiI	YATR	2 cut(s)	281, 366
Fnu4HI	GCNGC	4 cut(s)	45, 54, 57, 60
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	45, 54, 57, 60
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	4 cut(s)	45, 54, 57, 60
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	149, 217
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	149, 217
Hpy188I	TCNGA	4 cut(s)	30, 109, 231, 268
Hpy188III	TCNNGA	1 cut(s)	402
HpyAV	CCTTC	4 cut(s)	79, 236, 263, 269
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	144, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 53, 59
HpyF3I	CTNAG	4 cut(s)	29, 164, 287, 473
HpySE526I	ACGT	1 cut(s)	201
KspI	CCGCGG	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	88, 206
LpnPI	CCDG	6 cut(s)	162, 230, 280, 325, 366, 387
Lsp1109I	GCAGC	2 cut(s)	31, 46
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	3, 197
MalI	GATC	2 cut(s)	90, 208
MboI	GATC	2 cut(s)	88, 206
MboII	GAAGA	6 cut(s)	27, 57, 202, 244, 449, 473
MflI	RGATCY	2 cut(s)	88, 206
MluCI	AATT	1 cut(s)	516
MmeI	TCCRAC	2 cut(s)	184, 291
MnlI	CCTC	4 cut(s)	11, 232, 272, 403
MseI	TTAA	1 cut(s)	513
MspA1I	CMGCKG	2 cut(s)	56, 187
MspI	CCGG	2 cut(s)	149, 217
Mva1269I	GAATGC	2 cut(s)	423, 449
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	50, 53, 59
NdeII	GATC	2 cut(s)	88, 206
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	3, 197
NspV	TTCGAA	1 cut(s)	177
PctI	GAATGC	2 cut(s)	423, 449
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	46, 55, 58, 61
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	88, 206
PvuII	CAGCTG	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	4 cut(s)	45, 54, 57, 60
Sau3AI	GATC	2 cut(s)	88, 206
Sau96I	GGNCC	1 cut(s)	214
SetI	ASST	7 cut(s)	46, 74, 189, 204, 255, 288, 414
SfaNI	GCATC	1 cut(s)	289
Sfr303I	CCGCGG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	177
SgrBI	CCGCGG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	516
SsiI	CCGC	2 cut(s)	54, 56
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	516
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TseFI	GTSAC	2 cut(s)	3, 197
TseI	GCWGC	2 cut(s)	44, 59
Tsp45I	GTSAC	2 cut(s)	3, 197
TspDTI	ATGAA	3 cut(s)	135, 416, 456
XapI	RAATTY	1 cut(s)	516
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.