B3 domain-containing transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 158 - 256 | 5.1e-13 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1321 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 149, 272 |
| AciI | CCGC | 1 cut(s) | 153 |
| AclWI | GGATC | 5 cut(s) | 498, 511, 596, 1088, 1251 |
| AcoI | YGGCCR | 1 cut(s) | 251 |
| AfaI | GTAC | 5 cut(s) | 134, 167, 600, 635, 1004 |
| AfeI | AGCGCT | 1 cut(s) | 358 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| AflII | CTTAAG | 1 cut(s) | 1118 |
| AflIII | ACRYGT | 1 cut(s) | 790 |
| AgsI | TTSAA | 7 cut(s) | 84, 173, 293, 387, 487, 671, 1021 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 370 |
| AjnI | CCWGG | 1 cut(s) | 506 |
| AluBI | AGCT | 6 cut(s) | 163, 177, 684, 1134, 1170, 1184 |
| AluI | AGCT | 6 cut(s) | 163, 177, 684, 1134, 1170, 1184 |
| Alw21I | GWGCWC | 2 cut(s) | 806, 1226 |
| Alw26I | GTCTC | 2 cut(s) | 274, 971 |
| AlwI | GGATC | 5 cut(s) | 498, 511, 596, 1088, 1251 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 272, 1097 |
| Aor51HI | AGCGCT | 1 cut(s) | 358 |
| AoxI | GGCC | 3 cut(s) | 201, 251, 1200 |
| ApeKI | GCWGC | 5 cut(s) | 156, 302, 359, 861, 1046 |
| AspA2I | CCTAGG | 1 cut(s) | 227 |
| AspLEI | GCGC | 2 cut(s) | 359, 410 |
| AspS9I | GGNCC | 2 cut(s) | 372, 1200 |
| AsuHPI | GGTGA | 1 cut(s) | 1090 |
| AvaII | GGWCC | 1 cut(s) | 372 |
| AvrII | CCTAGG | 1 cut(s) | 227 |
| BamHI | GGATCC | 1 cut(s) | 503 |
| BbsI | GAAGAC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 2 cut(s) | 806, 1226 |
| BbvCI | CCTCAGC | 1 cut(s) | 584 |
| BbvI | GCAGC | 5 cut(s) | 168, 289, 346, 873, 1058 |
| BccI | CCATC | 5 cut(s) | 316, 388, 793, 1145, 1228 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 502, 536 |
| BciT130I | CCWGG | 1 cut(s) | 508 |
| BciVI | GTATCC | 1 cut(s) | 243 |
| BcoDI | GTCTC | 2 cut(s) | 274, 971 |
| BfaI | CTAG | 4 cut(s) | 93, 228, 951, 1043 |
| BfmI | CTRYAG | 1 cut(s) | 1089 |
| BfoI | RGCGCY | 2 cut(s) | 360, 411 |
| BfrI | CTTAAG | 1 cut(s) | 1118 |
| BfuI | GTATCC | 1 cut(s) | 243 |
| BisI | GCNGC | 6 cut(s) | 154, 157, 303, 360, 862, 1047 |
| BlnI | CCTAGG | 1 cut(s) | 227 |
| BlsI | GCNGC | 6 cut(s) | 155, 158, 304, 361, 863, 1048 |
| BmcAI | AGTACT | 1 cut(s) | 635 |
| Bme1390I | CCNGG | 1 cut(s) | 508 |
| Bme18I | GGWCC | 1 cut(s) | 372 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 370 |
| BmgT120I | GGNCC | 2 cut(s) | 372, 1200 |
| BmiI | GGNNCC | 3 cut(s) | 373, 505, 1201 |
| BmrFI | CCNGG | 1 cut(s) | 508 |
| BmrI | ACTGGG | 1 cut(s) | 646 |
| BmsI | GCATC | 2 cut(s) | 585, 879 |
| BmuI | ACTGGG | 1 cut(s) | 646 |
| BpiI | GAAGAC | 1 cut(s) | 343 |
| BpmI | CTGGAG | 2 cut(s) | 294, 725 |
| Bpu10I | CCTNAGC | 1 cut(s) | 584 |
| BsaI | GGTCTC | 1 cut(s) | 971 |
| BsaJI | CCNNGG | 4 cut(s) | 227, 248, 297, 507 |
| BsaWI | WCCGGW | 1 cut(s) | 605 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| Bse1I | ACTGG | 4 cut(s) | 236, 266, 641, 708 |
| BseBI | CCWGG | 1 cut(s) | 508 |
| BseDI | CCNNGG | 4 cut(s) | 227, 248, 297, 507 |
| BseGI | GGATG | 4 cut(s) | 98, 327, 742, 966 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| BseMII | CTCAG | 3 cut(s) | 221, 575, 789 |
| BseNI | ACTGG | 4 cut(s) | 236, 266, 641, 708 |
| BseXI | GCAGC | 5 cut(s) | 168, 289, 346, 873, 1058 |
| BsgI | GTGCAG | 2 cut(s) | 424, 696 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1294 |
| BshFI | GGCC | 3 cut(s) | 203, 253, 1202 |
| BsiEI | CGRYCG | 1 cut(s) | 1294 |
| BsiHKAI | GWGCWC | 2 cut(s) | 806, 1226 |
| BsiSI | CCGG | 3 cut(s) | 446, 606, 1283 |
| BslFI | GGGAC | 1 cut(s) | 1288 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 149, 199, 272, 513 |
| BsmAI | GTCTC | 2 cut(s) | 274, 971 |
| BsmFI | GGGAC | 1 cut(s) | 1288 |
| BsnI | GGCC | 3 cut(s) | 203, 253, 1202 |
| Bso31I | GGTCTC | 1 cut(s) | 971 |
| Bsp1286I | GDGCHC | 2 cut(s) | 806, 1226 |
| Bsp1407I | TGTACA | 2 cut(s) | 598, 1002 |
| Bsp143I | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| BspACI | CCGC | 1 cut(s) | 153 |
| BspANI | GGCC | 3 cut(s) | 203, 253, 1202 |
| BspCNI | CTCAG | 3 cut(s) | 220, 576, 790 |
| BspLI | GGNNCC | 3 cut(s) | 373, 505, 1201 |
| BspMAI | CTGCAG | 1 cut(s) | 1093 |
| BspPI | GGATC | 5 cut(s) | 498, 511, 596, 1088, 1251 |
| BspTI | CTTAAG | 1 cut(s) | 1118 |
| BspTNI | GGTCTC | 1 cut(s) | 971 |
| BsrGI | TGTACA | 2 cut(s) | 598, 1002 |
| BsrI | ACTGG | 4 cut(s) | 236, 266, 641, 708 |
| BssECI | CCNNGG | 4 cut(s) | 227, 248, 297, 507 |
| BssMI | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| BssT1I | CCWWGG | 2 cut(s) | 227, 297 |
| Bst2UI | CCWGG | 1 cut(s) | 508 |
| Bst4CI | ACNGT | 7 cut(s) | 824, 836, 845, 1053, 1086, 1228, 1259 |
| Bst6I | CTCTTC | 1 cut(s) | 485 |
| BstAFI | CTTAAG | 1 cut(s) | 1118 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1097 |
| BstAUI | TGTACA | 2 cut(s) | 598, 1002 |
| BstC8I | GCNNGC | 4 cut(s) | 161, 201, 328, 443 |
| BstDEI | CTNAG | 3 cut(s) | 207, 584, 798 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 511 |
| BstF5I | GGATG | 4 cut(s) | 98, 327, 742, 966 |
| BstH2I | RGCGCY | 2 cut(s) | 360, 411 |
| BstHHI | GCGC | 2 cut(s) | 359, 410 |
| BstKTI | GATC | 6 cut(s) | 280, 506, 591, 1096, 1246, 1294 |
| BstMAI | GTCTC | 2 cut(s) | 274, 971 |
| BstMBI | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| BstMCI | CGRYCG | 1 cut(s) | 1294 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 250, 867, 1097, 1276 |
| BstNI | CCWGG | 1 cut(s) | 508 |
| BstNSI | RCATGY | 1 cut(s) | 794 |
| BstSCI | CCNGG | 1 cut(s) | 506 |
| BstSFI | CTRYAG | 1 cut(s) | 1089 |
| BstV1I | GCAGC | 5 cut(s) | 168, 289, 346, 873, 1058 |
| BstV2I | GAAGAC | 1 cut(s) | 343 |
| BstX2I | RGATCY | 2 cut(s) | 503, 1093 |
| BstYI | RGATCY | 2 cut(s) | 503, 1093 |
| BsuI | GTATCC | 1 cut(s) | 243 |
| BsuRI | GGCC | 3 cut(s) | 203, 253, 1202 |
| BtsCI | GGATG | 4 cut(s) | 98, 327, 742, 966 |
| BtsIMutI | CAGTG | 4 cut(s) | 820, 1049, 1082, 1233 |
| Cac8I | GCNNGC | 4 cut(s) | 161, 201, 328, 443 |
| CaiI | CAGNNNCTG | 2 cut(s) | 272, 1097 |
| CfoI | GCGC | 2 cut(s) | 359, 410 |
| Cfr13I | GGNCC | 2 cut(s) | 372, 1200 |
| CseI | GACGC | 1 cut(s) | 1285 |
| Csp6I | GTAC | 5 cut(s) | 133, 166, 599, 634, 1003 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1056, 1091 |
| CviAII | CATG | 7 cut(s) | 46, 611, 622, 791, 943, 1107, 1304 |
| CviQI | GTAC | 5 cut(s) | 133, 166, 599, 634, 1003 |
| DdeI | CTNAG | 3 cut(s) | 207, 584, 798 |
| DpnI | GATC | 6 cut(s) | 279, 505, 590, 1095, 1245, 1293 |
| DpnII | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| DriI | GACNNNNNGTC | 1 cut(s) | 370 |
| EaeI | YGGCCR | 1 cut(s) | 251 |
| Eam1104I | CTCTTC | 1 cut(s) | 485 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 370 |
| EarI | CTCTTC | 1 cut(s) | 485 |
| Eco130I | CCWWGG | 2 cut(s) | 227, 297 |
| Eco147I | AGGCCT | 1 cut(s) | 203 |
| Eco31I | GGTCTC | 1 cut(s) | 971 |
| Eco47I | GGWCC | 1 cut(s) | 372 |
| Eco47III | AGCGCT | 1 cut(s) | 358 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 511 |
| EcoO109I | RGGNCCY | 2 cut(s) | 372, 1200 |
| EcoRII | CCWGG | 1 cut(s) | 506 |
| EcoT14I | CCWWGG | 2 cut(s) | 227, 297 |
| ErhI | CCWWGG | 2 cut(s) | 227, 297 |
| FaeI | CATG | 7 cut(s) | 49, 614, 625, 794, 946, 1110, 1307 |
| FaqI | GGGAC | 1 cut(s) | 1288 |
| FatI | CATG | 7 cut(s) | 45, 610, 621, 790, 942, 1106, 1303 |
| Fnu4HI | GCNGC | 6 cut(s) | 154, 157, 303, 360, 862, 1047 |
| FokI | GGATG | 4 cut(s) | 85, 334, 749, 953 |
| Fsp4HI | GCNGC | 6 cut(s) | 154, 157, 303, 360, 862, 1047 |
| FspBI | CTAG | 4 cut(s) | 93, 228, 951, 1043 |
| GlaI | GCGC | 2 cut(s) | 358, 409 |
| GluI | GCNGC | 6 cut(s) | 154, 157, 303, 360, 862, 1047 |
| GsuI | CTGGAG | 2 cut(s) | 294, 725 |
| HaeII | RGCGCY | 2 cut(s) | 360, 411 |
| HaeIII | GGCC | 3 cut(s) | 203, 253, 1202 |
| HapII | CCGG | 3 cut(s) | 446, 606, 1283 |
| HgaI | GACGC | 1 cut(s) | 1285 |
| HhaI | GCGC | 2 cut(s) | 359, 410 |
| Hin1II | CATG | 7 cut(s) | 49, 614, 625, 794, 946, 1110, 1307 |
| Hin6I | GCGC | 2 cut(s) | 357, 408 |
| HinP1I | GCGC | 2 cut(s) | 357, 408 |
| HincII | GTYRAC | 1 cut(s) | 17 |
| HindII | GTYRAC | 1 cut(s) | 17 |
| HindIII | AAGCTT | 1 cut(s) | 682 |
| HinfI | GANTC | 5 cut(s) | 293, 339, 365, 413, 983 |
| HpaII | CCGG | 3 cut(s) | 446, 606, 1283 |
| HphI | GGTGA | 1 cut(s) | 1090 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 1005, 1112 |
| Hpy188I | TCNGA | 3 cut(s) | 418, 593, 895 |
| Hpy188III | TCNNGA | 2 cut(s) | 273, 281 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 1005, 1112 |
| HpyAV | CCTTC | 8 cut(s) | 39, 90, 226, 278, 448, 472, 560, 1027 |
| HpyCH4III | ACNGT | 7 cut(s) | 824, 836, 845, 1053, 1086, 1228, 1259 |
| HpyCH4V | TGCA | 8 cut(s) | 305, 316, 391, 424, 441, 677, 720, 1091 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 250, 867, 1097, 1276 |
| HpyF3I | CTNAG | 3 cut(s) | 207, 584, 798 |
| Hsp92II | CATG | 7 cut(s) | 49, 614, 625, 794, 946, 1110, 1307 |
| HspAI | GCGC | 2 cut(s) | 357, 408 |
| Kzo9I | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| LmnI | GCTCC | 1 cut(s) | 1139 |
| Lsp1109I | GCAGC | 5 cut(s) | 168, 289, 346, 873, 1058 |
| LweI | GCATC | 2 cut(s) | 585, 879 |
| MaeI | CTAG | 4 cut(s) | 93, 228, 951, 1043 |
| MaeIII | GTNAC | 4 cut(s) | 793, 845, 1078, 1259 |
| MalI | GATC | 6 cut(s) | 279, 505, 590, 1095, 1245, 1293 |
| MboI | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| MboII | GAAGA | 7 cut(s) | 348, 499, 502, 1037, 1040, 1070, 1243 |
| MflI | RGATCY | 2 cut(s) | 503, 1093 |
| MhlI | GDGCHC | 2 cut(s) | 806, 1226 |
| MluCI | AATT | 5 cut(s) | 187, 458, 998, 1160, 1194 |
| MlyI | GAGTC | 2 cut(s) | 333, 359 |
| MmeI | TCCRAC | 3 cut(s) | 481, 1011, 1035 |
| MseI | TTAA | 4 cut(s) | 347, 474, 1119, 1128 |
| MslI | CAYNNNNRTG | 2 cut(s) | 941, 1251 |
| MspA1I | CMGCKG | 1 cut(s) | 163 |
| MspCI | CTTAAG | 1 cut(s) | 1118 |
| MspI | CCGG | 3 cut(s) | 446, 606, 1283 |
| MspR9I | CCNGG | 1 cut(s) | 508 |
| MvaI | CCWGG | 1 cut(s) | 508 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 250, 867, 1097, 1276 |
| NdeII | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| NlaIII | CATG | 7 cut(s) | 49, 614, 625, 794, 946, 1110, 1307 |
| NlaIV | GGNNCC | 3 cut(s) | 373, 505, 1201 |
| NmeAIII | GCCGAG | 1 cut(s) | 229 |
| NmuCI | GTSAC | 1 cut(s) | 1078 |
| NspI | RCATGY | 1 cut(s) | 794 |
| PceI | AGGCCT | 1 cut(s) | 203 |
| PciI | ACATGT | 1 cut(s) | 790 |
| PfeI | GAWTC | 3 cut(s) | 293, 413, 983 |
| PflFI | GACNNNGTC | 2 cut(s) | 1084, 1145 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 149, 272 |
| PkrI | GCNGC | 6 cut(s) | 155, 158, 304, 361, 863, 1048 |
| Ple19I | CGATCG | 1 cut(s) | 1294 |
| PleI | GAGTC | 2 cut(s) | 333, 359 |
| PpsI | GAGTC | 2 cut(s) | 333, 359 |
| PpuMI | RGGWCCY | 1 cut(s) | 372 |
| PscI | ACATGT | 1 cut(s) | 790 |
| PsiI | TTATAA | 1 cut(s) | 1321 |
| Psp5II | RGGWCCY | 1 cut(s) | 372 |
| Psp6I | CCWGG | 1 cut(s) | 506 |
| PspGI | CCWGG | 1 cut(s) | 506 |
| PspN4I | GGNNCC | 3 cut(s) | 373, 505, 1201 |
| PspPI | GGNCC | 2 cut(s) | 372, 1200 |
| PspPPI | RGGWCCY | 1 cut(s) | 372 |
| PstI | CTGCAG | 1 cut(s) | 1093 |
| PstNI | CAGNNNCTG | 2 cut(s) | 272, 1097 |
| PsuI | RGATCY | 2 cut(s) | 503, 1093 |
| PsyI | GACNNNGTC | 2 cut(s) | 1084, 1145 |
| PvuI | CGATCG | 1 cut(s) | 1294 |
| PvuII | CAGCTG | 1 cut(s) | 163 |
| RsaI | GTAC | 5 cut(s) | 134, 167, 600, 635, 1004 |
| RsaNI | GTAC | 5 cut(s) | 133, 166, 599, 634, 1003 |
| RseI | CAYNNNNRTG | 2 cut(s) | 941, 1251 |
| SaqAI | TTAA | 4 cut(s) | 347, 474, 1119, 1128 |
| SatI | GCNGC | 6 cut(s) | 154, 157, 303, 360, 862, 1047 |
| Sau3AI | GATC | 6 cut(s) | 277, 503, 588, 1093, 1243, 1291 |
| Sau96I | GGNCC | 2 cut(s) | 372, 1200 |
| ScaI | AGTACT | 1 cut(s) | 635 |
| SchI | GAGTC | 2 cut(s) | 333, 359 |
| ScrFI | CCNGG | 1 cut(s) | 508 |
| SduI | GDGCHC | 2 cut(s) | 806, 1226 |
| SfaNI | GCATC | 2 cut(s) | 585, 879 |
| SfcI | CTRYAG | 1 cut(s) | 1089 |
| SinI | GGWCC | 1 cut(s) | 372 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 941, 1251 |
| SmlI | CTYRAG | 1 cut(s) | 1118 |
| SmoI | CTYRAG | 1 cut(s) | 1118 |
| Sse9I | AATT | 5 cut(s) | 187, 458, 998, 1160, 1194 |
| SseBI | AGGCCT | 1 cut(s) | 203 |
| SsiI | CCGC | 1 cut(s) | 153 |
| SspMI | CTAG | 4 cut(s) | 93, 228, 951, 1043 |
| StuI | AGGCCT | 1 cut(s) | 203 |
| StyD4I | CCNGG | 1 cut(s) | 506 |
| StyI | CCWWGG | 2 cut(s) | 227, 297 |
| TaaI | ACNGT | 7 cut(s) | 824, 836, 845, 1053, 1086, 1228, 1259 |
| TaqI | TCGA | 3 cut(s) | 655, 1140, 1290 |
| TaqII | GACCGA | 1 cut(s) | 995 |
| TasI | AATT | 5 cut(s) | 187, 458, 998, 1160, 1194 |
| TatI | WGTACW | 4 cut(s) | 165, 598, 633, 1002 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TfiI | GAWTC | 3 cut(s) | 293, 413, 983 |
| Tru1I | TTAA | 4 cut(s) | 347, 474, 1119, 1128 |
| Tru9I | TTAA | 4 cut(s) | 347, 474, 1119, 1128 |
| TscAI | CASTG | 4 cut(s) | 827, 1056, 1089, 1233 |
| TseFI | GTSAC | 1 cut(s) | 1078 |
| TseI | GCWGC | 5 cut(s) | 156, 302, 359, 861, 1046 |
| Tsp45I | GTSAC | 1 cut(s) | 1078 |
| TspDTI | ATGAA | 8 cut(s) | 87, 467, 638, 825, 959, 1038, 1047, 1095 |
| TspRI | CASTG | 4 cut(s) | 827, 1056, 1089, 1233 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1084, 1145 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 149, 272 |
| Vha464I | CTTAAG | 1 cut(s) | 1118 |
| VpaK11BI | GGWCC | 1 cut(s) | 372 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 511 |
| XceI | RCATGY | 1 cut(s) | 794 |
| XmaJI | CCTAGG | 1 cut(s) | 227 |
| XspI | CTAG | 4 cut(s) | 93, 228, 951, 1043 |
| ZrmI | AGTACT | 1 cut(s) | 635 |