RLG00000033751

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
31763988 .. 31766795
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033751

Sequence Viewer

Length: 1323 bp
ATGGAGAACTTCCGTCAACCTTTCTTTCCTTCCACAACAACTACCATGACCTCCATTTACGAACCTATGAGTTCCTCCCCTTCAACTCTTGCTAGTTCATCCTCTCTGTCCTATCATTATCCAGCAGTTCAGTACCTACCACCACTCAATGGCGGCAGCCAGCTGTACTTTCAAAGCTCATACCCTAATTACCAGAAGCAGGCCTCTCAGCCCCCCTTCCAATATCCTAGGTATCCAGTCCTGCTTCCTCGGCCACAGCCAAATCCAGTCTCTGGAGATCAAGAAGGGATTGAATCCAAGGCTGCAAGAGATGTGCAAAGGATGGCTCGCCAAAGAAGACTCTTTTTAAGCAGAAGCGCTGCTGACTCTGGGTCCTCATCAAGTTCAATGCAGATGGATTTATGTGGCGCTGATTCTGATATGCAGAACACAGACCTCTGCACGCCGGATATGAAGGAATTGAGAGTGTTGTTTAAGAAGGAGTTGAAGAAGAGTGATGTTGGATCCTGGGGCAGGATTGTCGTTCCAAAGAAAGAGGCAGAGAAATACCTTCCAAGCCTTGCTGAAAAACAAGGCATCGTGCTGAGGATCAGAGATGTACATTCCGGTCATGTGTGGGGCATGAAATACAAGTACTGGGCAAATAACAAAAGTCGAATGTATGTCTTTGAAAGTGCAGGAAGCTTTATTAGGAAAAATGGACTGGAGGTGGGAGATTGCATTTCTCTTTACAAGGATGAGAGCAAGAACTTTTACTTCTCCATAGAAAAGGCAGGAACAAGACCATCACATGTAACTGAGTGCTCGTATGAACAACAGCACTGTGCTACCAACTGTAAAGACGGTAACGATGATGACAGCAGCAGTAGCATCAACACACAGATTACCAACTCTGACGATAACAACCACAAGAACAACACCAACACCAACACCAACACTCACATGAACTCTAGCAACAATGCTGACATCCACAGCGAGACCGATTCCAACAATACAAAATTGTACACAACATATACCTTCAATGAAGAAGATGAATGGTATCTAGCAGCACTGTTGGAAGATGATACAAACAAGGTGGTGACACTGTCTGCAGATCCTGCTTTTTCATGTGGACTACTTAAGGAAGTTAATAGCTCCATCGACAATGTCATCAATACTCAATTAGAAAGCTCTACTCAACCAGCTATGGCAGGAATTGGGGCCTCATCATCGTCCTCACAGAGCACAGTGAAGATGGTGGAGGATCATTTTGATGACTGTTACAAAGGGCTTGGGACGCTTCCGGCAGTCGATCGTTATGAGCATGATGATTTTTTATTATAA

Protein Analysis

441

Amino Acids

49.22

Weight (kDa)

5.29

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 158 - 256 5.1e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1321
AccB7I CCANNNNNTGG 2 cut(s) 149, 272
AciI CCGC 1 cut(s) 153
AclWI GGATC 5 cut(s) 498, 511, 596, 1088, 1251
AcoI YGGCCR 1 cut(s) 251
AfaI GTAC 5 cut(s) 134, 167, 600, 635, 1004
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
AflII CTTAAG 1 cut(s) 1118
AflIII ACRYGT 1 cut(s) 790
AgsI TTSAA 7 cut(s) 84, 173, 293, 387, 487, 671, 1021
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 6 cut(s) 163, 177, 684, 1134, 1170, 1184
AluI AGCT 6 cut(s) 163, 177, 684, 1134, 1170, 1184
Alw21I GWGCWC 2 cut(s) 806, 1226
Alw26I GTCTC 2 cut(s) 274, 971
AlwI GGATC 5 cut(s) 498, 511, 596, 1088, 1251
AlwNI CAGNNNCTG 2 cut(s) 272, 1097
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 3 cut(s) 201, 251, 1200
ApeKI GCWGC 5 cut(s) 156, 302, 359, 861, 1046
AspA2I CCTAGG 1 cut(s) 227
AspLEI GCGC 2 cut(s) 359, 410
AspS9I GGNCC 2 cut(s) 372, 1200
AsuHPI GGTGA 1 cut(s) 1090
AvaII GGWCC 1 cut(s) 372
AvrII CCTAGG 1 cut(s) 227
BamHI GGATCC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 2 cut(s) 806, 1226
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 5 cut(s) 168, 289, 346, 873, 1058
BccI CCATC 5 cut(s) 316, 388, 793, 1145, 1228
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 1 cut(s) 508
BciVI GTATCC 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 274, 971
BfaI CTAG 4 cut(s) 93, 228, 951, 1043
BfmI CTRYAG 1 cut(s) 1089
BfoI RGCGCY 2 cut(s) 360, 411
BfrI CTTAAG 1 cut(s) 1118
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 6 cut(s) 154, 157, 303, 360, 862, 1047
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 6 cut(s) 155, 158, 304, 361, 863, 1048
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 372
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 372, 1200
BmiI GGNNCC 3 cut(s) 373, 505, 1201
BmrFI CCNGG 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 2 cut(s) 585, 879
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 2 cut(s) 294, 725
Bpu10I CCTNAGC 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 4 cut(s) 227, 248, 297, 507
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
Bse1I ACTGG 4 cut(s) 236, 266, 641, 708
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 4 cut(s) 227, 248, 297, 507
BseGI GGATG 4 cut(s) 98, 327, 742, 966
BseLI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
BseMII CTCAG 3 cut(s) 221, 575, 789
BseNI ACTGG 4 cut(s) 236, 266, 641, 708
BseXI GCAGC 5 cut(s) 168, 289, 346, 873, 1058
BsgI GTGCAG 2 cut(s) 424, 696
Bsh1285I CGRYCG 1 cut(s) 1294
BshFI GGCC 3 cut(s) 203, 253, 1202
BsiEI CGRYCG 1 cut(s) 1294
BsiHKAI GWGCWC 2 cut(s) 806, 1226
BsiSI CCGG 3 cut(s) 446, 606, 1283
BslFI GGGAC 1 cut(s) 1288
BslI CCNNNNNNNGG 4 cut(s) 149, 199, 272, 513
BsmAI GTCTC 2 cut(s) 274, 971
BsmFI GGGAC 1 cut(s) 1288
BsnI GGCC 3 cut(s) 203, 253, 1202
Bso31I GGTCTC 1 cut(s) 971
Bsp1286I GDGCHC 2 cut(s) 806, 1226
Bsp1407I TGTACA 2 cut(s) 598, 1002
Bsp143I GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
BspACI CCGC 1 cut(s) 153
BspANI GGCC 3 cut(s) 203, 253, 1202
BspCNI CTCAG 3 cut(s) 220, 576, 790
BspLI GGNNCC 3 cut(s) 373, 505, 1201
BspMAI CTGCAG 1 cut(s) 1093
BspPI GGATC 5 cut(s) 498, 511, 596, 1088, 1251
BspTI CTTAAG 1 cut(s) 1118
BspTNI GGTCTC 1 cut(s) 971
BsrGI TGTACA 2 cut(s) 598, 1002
BsrI ACTGG 4 cut(s) 236, 266, 641, 708
BssECI CCNNGG 4 cut(s) 227, 248, 297, 507
BssMI GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
BssT1I CCWWGG 2 cut(s) 227, 297
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 7 cut(s) 824, 836, 845, 1053, 1086, 1228, 1259
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 1118
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstAUI TGTACA 2 cut(s) 598, 1002
BstC8I GCNNGC 4 cut(s) 161, 201, 328, 443
BstDEI CTNAG 3 cut(s) 207, 584, 798
BstENI CCTNNNNNAGG 1 cut(s) 511
BstF5I GGATG 4 cut(s) 98, 327, 742, 966
BstH2I RGCGCY 2 cut(s) 360, 411
BstHHI GCGC 2 cut(s) 359, 410
BstKTI GATC 6 cut(s) 280, 506, 591, 1096, 1246, 1294
BstMAI GTCTC 2 cut(s) 274, 971
BstMBI GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
BstMCI CGRYCG 1 cut(s) 1294
BstMWI GCNNNNNNNGC 4 cut(s) 250, 867, 1097, 1276
BstNI CCWGG 1 cut(s) 508
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 1089
BstV1I GCAGC 5 cut(s) 168, 289, 346, 873, 1058
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 2 cut(s) 503, 1093
BstYI RGATCY 2 cut(s) 503, 1093
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 3 cut(s) 203, 253, 1202
BtsCI GGATG 4 cut(s) 98, 327, 742, 966
BtsIMutI CAGTG 4 cut(s) 820, 1049, 1082, 1233
Cac8I GCNNGC 4 cut(s) 161, 201, 328, 443
CaiI CAGNNNCTG 2 cut(s) 272, 1097
CfoI GCGC 2 cut(s) 359, 410
Cfr13I GGNCC 2 cut(s) 372, 1200
CseI GACGC 1 cut(s) 1285
Csp6I GTAC 5 cut(s) 133, 166, 599, 634, 1003
CspCI CAANNNNNGTGG 2 cut(s) 1056, 1091
CviAII CATG 7 cut(s) 46, 611, 622, 791, 943, 1107, 1304
CviQI GTAC 5 cut(s) 133, 166, 599, 634, 1003
DdeI CTNAG 3 cut(s) 207, 584, 798
DpnI GATC 6 cut(s) 279, 505, 590, 1095, 1245, 1293
DpnII GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
DriI GACNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 485
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 2 cut(s) 227, 297
Eco147I AGGCCT 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 1 cut(s) 372
Eco47III AGCGCT 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 511
EcoO109I RGGNCCY 2 cut(s) 372, 1200
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 2 cut(s) 227, 297
ErhI CCWWGG 2 cut(s) 227, 297
FaeI CATG 7 cut(s) 49, 614, 625, 794, 946, 1110, 1307
FaqI GGGAC 1 cut(s) 1288
FatI CATG 7 cut(s) 45, 610, 621, 790, 942, 1106, 1303
Fnu4HI GCNGC 6 cut(s) 154, 157, 303, 360, 862, 1047
FokI GGATG 4 cut(s) 85, 334, 749, 953
Fsp4HI GCNGC 6 cut(s) 154, 157, 303, 360, 862, 1047
FspBI CTAG 4 cut(s) 93, 228, 951, 1043
GlaI GCGC 2 cut(s) 358, 409
GluI GCNGC 6 cut(s) 154, 157, 303, 360, 862, 1047
GsuI CTGGAG 2 cut(s) 294, 725
HaeII RGCGCY 2 cut(s) 360, 411
HaeIII GGCC 3 cut(s) 203, 253, 1202
HapII CCGG 3 cut(s) 446, 606, 1283
HgaI GACGC 1 cut(s) 1285
HhaI GCGC 2 cut(s) 359, 410
Hin1II CATG 7 cut(s) 49, 614, 625, 794, 946, 1110, 1307
Hin6I GCGC 2 cut(s) 357, 408
HinP1I GCGC 2 cut(s) 357, 408
HincII GTYRAC 1 cut(s) 17
HindII GTYRAC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 5 cut(s) 293, 339, 365, 413, 983
HpaII CCGG 3 cut(s) 446, 606, 1283
HphI GGTGA 1 cut(s) 1090
Hpy166II GTNNAC 3 cut(s) 17, 1005, 1112
Hpy188I TCNGA 3 cut(s) 418, 593, 895
Hpy188III TCNNGA 2 cut(s) 273, 281
Hpy8I GTNNAC 3 cut(s) 17, 1005, 1112
HpyAV CCTTC 8 cut(s) 39, 90, 226, 278, 448, 472, 560, 1027
HpyCH4III ACNGT 7 cut(s) 824, 836, 845, 1053, 1086, 1228, 1259
HpyCH4V TGCA 8 cut(s) 305, 316, 391, 424, 441, 677, 720, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 867, 1097, 1276
HpyF3I CTNAG 3 cut(s) 207, 584, 798
Hsp92II CATG 7 cut(s) 49, 614, 625, 794, 946, 1110, 1307
HspAI GCGC 2 cut(s) 357, 408
Kzo9I GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
LmnI GCTCC 1 cut(s) 1139
Lsp1109I GCAGC 5 cut(s) 168, 289, 346, 873, 1058
LweI GCATC 2 cut(s) 585, 879
MaeI CTAG 4 cut(s) 93, 228, 951, 1043
MaeIII GTNAC 4 cut(s) 793, 845, 1078, 1259
MalI GATC 6 cut(s) 279, 505, 590, 1095, 1245, 1293
MboI GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
MboII GAAGA 7 cut(s) 348, 499, 502, 1037, 1040, 1070, 1243
MflI RGATCY 2 cut(s) 503, 1093
MhlI GDGCHC 2 cut(s) 806, 1226
MluCI AATT 5 cut(s) 187, 458, 998, 1160, 1194
MlyI GAGTC 2 cut(s) 333, 359
MmeI TCCRAC 3 cut(s) 481, 1011, 1035
MseI TTAA 4 cut(s) 347, 474, 1119, 1128
MslI CAYNNNNRTG 2 cut(s) 941, 1251
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 1118
MspI CCGG 3 cut(s) 446, 606, 1283
MspR9I CCNGG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 4 cut(s) 250, 867, 1097, 1276
NdeII GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
NlaIII CATG 7 cut(s) 49, 614, 625, 794, 946, 1110, 1307
NlaIV GGNNCC 3 cut(s) 373, 505, 1201
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 1078
NspI RCATGY 1 cut(s) 794
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 1 cut(s) 790
PfeI GAWTC 3 cut(s) 293, 413, 983
PflFI GACNNNGTC 2 cut(s) 1084, 1145
PflMI CCANNNNNTGG 2 cut(s) 149, 272
PkrI GCNGC 6 cut(s) 155, 158, 304, 361, 863, 1048
Ple19I CGATCG 1 cut(s) 1294
PleI GAGTC 2 cut(s) 333, 359
PpsI GAGTC 2 cut(s) 333, 359
PpuMI RGGWCCY 1 cut(s) 372
PscI ACATGT 1 cut(s) 790
PsiI TTATAA 1 cut(s) 1321
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 3 cut(s) 373, 505, 1201
PspPI GGNCC 2 cut(s) 372, 1200
PspPPI RGGWCCY 1 cut(s) 372
PstI CTGCAG 1 cut(s) 1093
PstNI CAGNNNCTG 2 cut(s) 272, 1097
PsuI RGATCY 2 cut(s) 503, 1093
PsyI GACNNNGTC 2 cut(s) 1084, 1145
PvuI CGATCG 1 cut(s) 1294
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 5 cut(s) 134, 167, 600, 635, 1004
RsaNI GTAC 5 cut(s) 133, 166, 599, 634, 1003
RseI CAYNNNNRTG 2 cut(s) 941, 1251
SaqAI TTAA 4 cut(s) 347, 474, 1119, 1128
SatI GCNGC 6 cut(s) 154, 157, 303, 360, 862, 1047
Sau3AI GATC 6 cut(s) 277, 503, 588, 1093, 1243, 1291
Sau96I GGNCC 2 cut(s) 372, 1200
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 2 cut(s) 333, 359
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 2 cut(s) 806, 1226
SfaNI GCATC 2 cut(s) 585, 879
SfcI CTRYAG 1 cut(s) 1089
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 941, 1251
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
Sse9I AATT 5 cut(s) 187, 458, 998, 1160, 1194
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 153
SspMI CTAG 4 cut(s) 93, 228, 951, 1043
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 2 cut(s) 227, 297
TaaI ACNGT 7 cut(s) 824, 836, 845, 1053, 1086, 1228, 1259
TaqI TCGA 3 cut(s) 655, 1140, 1290
TaqII GACCGA 1 cut(s) 995
TasI AATT 5 cut(s) 187, 458, 998, 1160, 1194
TatI WGTACW 4 cut(s) 165, 598, 633, 1002
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 293, 413, 983
Tru1I TTAA 4 cut(s) 347, 474, 1119, 1128
Tru9I TTAA 4 cut(s) 347, 474, 1119, 1128
TscAI CASTG 4 cut(s) 827, 1056, 1089, 1233
TseFI GTSAC 1 cut(s) 1078
TseI GCWGC 5 cut(s) 156, 302, 359, 861, 1046
Tsp45I GTSAC 1 cut(s) 1078
TspDTI ATGAA 8 cut(s) 87, 467, 638, 825, 959, 1038, 1047, 1095
TspRI CASTG 4 cut(s) 827, 1056, 1089, 1233
Tth111I GACNNNGTC 2 cut(s) 1084, 1145
Van91I CCANNNNNTGG 2 cut(s) 149, 272
Vha464I CTTAAG 1 cut(s) 1118
VpaK11BI GGWCC 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 511
XceI RCATGY 1 cut(s) 794
XmaJI CCTAGG 1 cut(s) 227
XspI CTAG 4 cut(s) 93, 228, 951, 1043
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.