Rw5G023300

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
32839551 .. 32842297
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023300.1

Sequence Viewer

Length: 1263 bp
ATGGAGAACTTCCGACAACCTTTCTTTCCTTCCACAACAACCACCATGACCTCCATTTATGAACCTATGAGTTCCTCCCCTTCAACTCTTGCTAGTTCATCCTCTCTGTCCTATCATTATCCAGCAGTTCAGTACCTACCACCACTCAATGGCGGCAGCCAGCTGTACTTTCAAAGCTCATACCCTAATTACCAGAAGCAGGCCTGTCAGCCCCCCTTCCAATATCCCAGTCTTGGAGATCAAGAAGGGATTGAGTCCAAGGCTGCAAGAGATGAGCAAAGGATGGCTCGCCAAAGAAGACTCTTTTTAAGCAGAAGCGCTGCTGACTCTGGGTCCTCATCAAGTTCAATGCAGATGGATTTATGTGGTGCTGATTCTGATATGCAGAACACAGACCTCTGCACGCCGGATATGAAGGAATTGAGAGTGTTGTTCAAGGAGTTGAAGAAGAGTGATGTTGGATCCTGGGGCAGGATTGTCGTTCCAAAGAAAGAGGCAGAGAAATACCTTCCAAGCCTTGCTGAAAAACAAGGCATCGTGCTGAGGATCAGAGATGTACATTCCGGTCACGTGTGGGGCATGAAATACAAGTACTGGGCAAAAAACAAAAGTCGAATGTATGTCTTTGAAAGTGCAGGAAGCTTTATTAGGAAAAATGAACTGGAGGTGGGAGATTGCATTTCTCTTTACAAGGATGAGAACAAGAACTTTTACTTCTCCATAGACAAGGCAGGAACAGGACCATCACATGTAACTGAGTCCTCGTATGAACAACAGCACTGTCCTACCAACTGTAAAGACGGTAACGATGATGACAACAGCAGTAGCATCAACACACAGATTACCAACTCTGACGATAACAACGCCAACACCAACACCTACGTGAACTCCAGCAACAATGCTGACATCCACAGCGAAACCGATTCCAACAATACAAAATTGCACACACCATATACCTTCAATGAAGAAGATGAATGGTATCTAGCAGCACTGTTGGAAGATGAATCAAAAAAGGTGGTGACACTGTCTGCAGATCCTGCTTTTTCATGTGAACGACTTAAGGAAGTCAATAGCTCCATCGACAATGTCATCAATACTCAATTAGAAAGCTCTACTCAACCAGCTATGGCAGGAATTGGGGCCTCATCATCGTCCTCACAGAGCACAGTGAAGATGGTGGAGGATCACTTCGATGACTGTTACAAAGGGCTTGGGACGCTTCCGGCAGTTGATCGCTATGAGCATGATGATTTTTTGTTATAA

Protein Analysis

420

Amino Acids

47.01

Weight (kDa)

4.96

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 145 - 241 2.4e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1261
AccB7I CCANNNNNTGG 1 cut(s) 149
AciI CCGC 1 cut(s) 153
AclWI GGATC 5 cut(s) 456, 469, 554, 1028, 1191
AcvI CACGTG 1 cut(s) 571
AfaI GTAC 4 cut(s) 134, 167, 558, 593
AfeI AGCGCT 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 149, 199, 233, 471
AflII CTTAAG 1 cut(s) 1058
AflIII ACRYGT 2 cut(s) 570, 748
AgsI TTSAA 7 cut(s) 84, 173, 348, 436, 445, 629, 961
AhdI GACNNNNNGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 464
AleI CACNNNNGTG 1 cut(s) 881
AluBI AGCT 6 cut(s) 163, 177, 642, 1074, 1110, 1124
AluI AGCT 6 cut(s) 163, 177, 642, 1074, 1110, 1124
Alw21I GWGCWC 1 cut(s) 1166
AlwI GGATC 5 cut(s) 456, 469, 554, 1028, 1191
AlwNI CAGNNNCTG 1 cut(s) 1037
Aor51HI AGCGCT 1 cut(s) 319
AoxI GGCC 2 cut(s) 201, 1140
ApeKI GCWGC 4 cut(s) 156, 263, 320, 986
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 333, 740, 1140
AsuHPI GGTGA 1 cut(s) 1030
AvaII GGWCC 2 cut(s) 333, 740
BamHI GGATCC 1 cut(s) 461
BbrPI CACGTG 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 1166
BbvCI CCTCAGC 1 cut(s) 542
BbvI GCAGC 4 cut(s) 168, 250, 307, 998
BccI CCATC 5 cut(s) 277, 349, 751, 1085, 1168
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 466
BfaI CTAG 2 cut(s) 93, 983
BfmI CTRYAG 1 cut(s) 1029
BfoI RGCGCY 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 1058
BisI GCNGC 5 cut(s) 154, 157, 264, 321, 987
BlsI GCNGC 5 cut(s) 155, 158, 265, 322, 988
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 466
Bme18I GGWCC 2 cut(s) 333, 740
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 333, 740, 1140
BmiI GGNNCC 3 cut(s) 334, 463, 1141
BmrFI CCNGG 1 cut(s) 466
BmrI ACTGGG 2 cut(s) 222, 604
BmsI GCATC 2 cut(s) 543, 837
BmuI ACTGGG 2 cut(s) 222, 604
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 683, 874
Bpu10I CCTNAGC 1 cut(s) 542
BsaAI YACGTR 2 cut(s) 571, 883
BsaJI CCNNGG 2 cut(s) 258, 465
BsaWI WCCGGW 1 cut(s) 563
BsaXI ACNNNNNCTCC 2 cut(s) 872, 902
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 199, 233, 471
Bse1I ACTGG 3 cut(s) 228, 599, 666
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 258, 465
BseGI GGATG 4 cut(s) 98, 288, 700, 906
BseLI CCNNNNNNNGG 4 cut(s) 149, 199, 233, 471
BseMII CTCAG 2 cut(s) 533, 747
BseNI ACTGG 3 cut(s) 228, 599, 666
BseXI GCAGC 4 cut(s) 168, 250, 307, 998
BsgI GTGCAG 2 cut(s) 385, 654
BshFI GGCC 2 cut(s) 203, 1142
BsiHKAI GWGCWC 1 cut(s) 1166
BsiSI CCGG 3 cut(s) 407, 564, 1223
BslFI GGGAC 1 cut(s) 1228
BslI CCNNNNNNNGG 4 cut(s) 149, 199, 233, 471
BsmFI GGGAC 1 cut(s) 1228
BsnI GGCC 2 cut(s) 203, 1142
Bsp1286I GDGCHC 1 cut(s) 1166
Bsp1407I TGTACA 1 cut(s) 556
Bsp143I GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 203, 1142
BspCNI CTCAG 2 cut(s) 534, 748
BspLI GGNNCC 3 cut(s) 334, 463, 1141
BspMAI CTGCAG 1 cut(s) 1033
BspPI GGATC 5 cut(s) 456, 469, 554, 1028, 1191
BspTI CTTAAG 1 cut(s) 1058
BsrGI TGTACA 1 cut(s) 556
BsrI ACTGG 3 cut(s) 228, 599, 666
BssECI CCNNGG 2 cut(s) 258, 465
BssMI GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 7 cut(s) 782, 794, 803, 993, 1026, 1168, 1199
Bst6I CTCTTC 1 cut(s) 443
BstAFI CTTAAG 1 cut(s) 1058
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstAUI TGTACA 1 cut(s) 556
BstBAI YACGTR 2 cut(s) 571, 883
BstC8I GCNNGC 4 cut(s) 161, 201, 289, 404
BstDEI CTNAG 2 cut(s) 542, 756
BstENI CCTNNNNNAGG 1 cut(s) 469
BstF5I GGATG 4 cut(s) 98, 288, 700, 906
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 6 cut(s) 241, 464, 549, 1036, 1186, 1234
BstMBI GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
BstMWI GCNNNNNNNGC 2 cut(s) 1037, 1216
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 1 cut(s) 1029
BstV1I GCAGC 4 cut(s) 168, 250, 307, 998
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 461, 1033
BstYI RGATCY 2 cut(s) 461, 1033
BsuRI GGCC 2 cut(s) 203, 1142
BtsCI GGATG 4 cut(s) 98, 288, 700, 906
BtsIMutI CAGTG 4 cut(s) 778, 989, 1022, 1173
Cac8I GCNNGC 4 cut(s) 161, 201, 289, 404
CaiI CAGNNNCTG 1 cut(s) 1037
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 333, 740, 1140
CseI GACGC 1 cut(s) 1225
Csp6I GTAC 4 cut(s) 133, 166, 557, 592
CspCI CAANNNNNGTGG 2 cut(s) 996, 1031
CviAII CATG 5 cut(s) 46, 580, 749, 1047, 1244
CviQI GTAC 4 cut(s) 133, 166, 557, 592
DdeI CTNAG 2 cut(s) 542, 756
DpnI GATC 6 cut(s) 240, 463, 548, 1035, 1185, 1233
DpnII GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
DriI GACNNNNNGTC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 443
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 333, 740
Eco47III AGCGCT 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 571
EcoNI CCTNNNNNAGG 1 cut(s) 469
EcoO109I RGGNCCY 2 cut(s) 333, 1140
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 5 cut(s) 49, 583, 752, 1050, 1247
FaqI GGGAC 1 cut(s) 1228
FatI CATG 5 cut(s) 45, 579, 748, 1046, 1243
Fnu4HI GCNGC 5 cut(s) 154, 157, 264, 321, 987
FokI GGATG 4 cut(s) 85, 295, 707, 893
Fsp4HI GCNGC 5 cut(s) 154, 157, 264, 321, 987
FspBI CTAG 2 cut(s) 93, 983
GlaI GCGC 1 cut(s) 319
GluI GCNGC 5 cut(s) 154, 157, 264, 321, 987
GsuI CTGGAG 2 cut(s) 683, 874
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 2 cut(s) 203, 1142
HapII CCGG 3 cut(s) 407, 564, 1223
HgaI GACGC 1 cut(s) 1225
HhaI GCGC 1 cut(s) 320
Hin1II CATG 5 cut(s) 49, 583, 752, 1050, 1247
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 7 cut(s) 254, 300, 326, 374, 758, 923, 1004
HpaII CCGG 3 cut(s) 407, 564, 1223
HphI GGTGA 1 cut(s) 1030
Hpy166II GTNNAC 2 cut(s) 886, 1052
Hpy188I TCNGA 4 cut(s) 14, 379, 551, 853
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 2 cut(s) 886, 1052
HpyAV CCTTC 7 cut(s) 39, 90, 226, 239, 409, 518, 967
HpyCH4III ACNGT 7 cut(s) 782, 794, 803, 993, 1026, 1168, 1199
HpyCH4IV ACGT 2 cut(s) 570, 882
HpyCH4V TGCA 8 cut(s) 266, 352, 385, 402, 635, 678, 943, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 1037, 1216
HpyF3I CTNAG 2 cut(s) 542, 756
HpySE526I ACGT 2 cut(s) 570, 882
Hsp92II CATG 5 cut(s) 49, 583, 752, 1050, 1247
HspAI GCGC 1 cut(s) 318
Kzo9I GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
LmnI GCTCC 1 cut(s) 1079
Lsp1109I GCAGC 4 cut(s) 168, 250, 307, 998
LweI GCATC 2 cut(s) 543, 837
MaeI CTAG 2 cut(s) 93, 983
MaeII ACGT 2 cut(s) 570, 882
MaeIII GTNAC 5 cut(s) 566, 751, 803, 1018, 1199
MalI GATC 6 cut(s) 240, 463, 548, 1035, 1185, 1233
MboI GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
MboII GAAGA 7 cut(s) 309, 457, 460, 977, 980, 1010, 1183
MflI RGATCY 2 cut(s) 461, 1033
MhlI GDGCHC 1 cut(s) 1166
MluCI AATT 5 cut(s) 187, 419, 938, 1100, 1134
MlyI GAGTC 4 cut(s) 263, 294, 320, 767
MmeI TCCRAC 4 cut(s) 37, 439, 951, 975
MseI TTAA 2 cut(s) 308, 1059
MslI CAYNNNNRTG 2 cut(s) 881, 1191
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 1058
MspI CCGG 3 cut(s) 407, 564, 1223
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 2 cut(s) 1037, 1216
NdeII GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
NlaIII CATG 5 cut(s) 49, 583, 752, 1050, 1247
NlaIV GGNNCC 3 cut(s) 334, 463, 1141
NmuCI GTSAC 2 cut(s) 566, 1018
NspI RCATGY 1 cut(s) 752
OliI CACNNNNGTG 1 cut(s) 881
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 1 cut(s) 748
PfeI GAWTC 3 cut(s) 374, 923, 1004
PflFI GACNNNGTC 2 cut(s) 1024, 1085
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 5 cut(s) 155, 158, 265, 322, 988
PleI GAGTC 4 cut(s) 262, 294, 320, 766
PmaCI CACGTG 1 cut(s) 571
PmlI CACGTG 1 cut(s) 571
PpsI GAGTC 4 cut(s) 262, 294, 320, 766
Ppu21I YACGTR 2 cut(s) 571, 883
PpuMI RGGWCCY 1 cut(s) 333
PscI ACATGT 1 cut(s) 748
PsiI TTATAA 1 cut(s) 1261
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 464
PspCI CACGTG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 334, 463, 1141
PspPI GGNCC 3 cut(s) 333, 740, 1140
PspPPI RGGWCCY 1 cut(s) 333
PstI CTGCAG 1 cut(s) 1033
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 2 cut(s) 461, 1033
PsyI GACNNNGTC 2 cut(s) 1024, 1085
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 4 cut(s) 134, 167, 558, 593
RsaNI GTAC 4 cut(s) 133, 166, 557, 592
RseI CAYNNNNRTG 2 cut(s) 881, 1191
SaqAI TTAA 2 cut(s) 308, 1059
SatI GCNGC 5 cut(s) 154, 157, 264, 321, 987
Sau3AI GATC 6 cut(s) 238, 461, 546, 1033, 1183, 1231
Sau96I GGNCC 3 cut(s) 333, 740, 1140
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 4 cut(s) 263, 294, 320, 767
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 1 cut(s) 1166
SfaNI GCATC 2 cut(s) 543, 837
SfcI CTRYAG 1 cut(s) 1029
SinI GGWCC 2 cut(s) 333, 740
SmiMI CAYNNNNRTG 2 cut(s) 881, 1191
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 5 cut(s) 187, 419, 938, 1100, 1134
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 153
SspMI CTAG 2 cut(s) 93, 983
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 464
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 7 cut(s) 782, 794, 803, 993, 1026, 1168, 1199
TaiI ACGT 2 cut(s) 573, 885
TaqI TCGA 3 cut(s) 613, 1080, 1191
TasI AATT 5 cut(s) 187, 419, 938, 1100, 1134
TatI WGTACW 3 cut(s) 165, 556, 591
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 374, 923, 1004
Tru1I TTAA 2 cut(s) 308, 1059
Tru9I TTAA 2 cut(s) 308, 1059
TscAI CASTG 4 cut(s) 785, 996, 1029, 1173
TseFI GTSAC 2 cut(s) 566, 1018
TseI GCWGC 4 cut(s) 156, 263, 320, 986
Tsp45I GTSAC 2 cut(s) 566, 1018
TspRI CASTG 4 cut(s) 785, 996, 1029, 1173
Tth111I GACNNNGTC 2 cut(s) 1024, 1085
Van91I CCANNNNNTGG 1 cut(s) 149
Vha464I CTTAAG 1 cut(s) 1058
VpaK11BI GGWCC 2 cut(s) 333, 740
XagI CCTNNNNNAGG 1 cut(s) 469
XceI RCATGY 1 cut(s) 752
XspI CTAG 2 cut(s) 93, 983
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.