Rroxscaffold_1G00067220

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
88569936 .. 88575976
6041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067220.1

Sequence Viewer

Length: 1248 bp
ATGGAGAACTTCCGGCCACCTTTCACACCTTCAACAACTACCGCTAGCTCTTCTTCTCCATCTTCAACTCTGGAAAGTTCATCATCTCAGTTGTATCATGATCCAGTGGGTTGCTACCTACCGCCACACCCACATTGGCAGCAACCACCATGTTTTTCATATCCTCCTCCCATGCGTCCCGATCCAGTCCCAAGTTCGGCTGCGTGGGAAACAAGGATGGCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGCTTCTTCAAGGTTGGCAGTAGAGAAGGATCCATCTAGTGCTGTTTCTGAAACGCCGAATGAACAATACATATACTCATTCTGCACGCCGGATAACAAGAAACTGAGAATGTTGTTCGAAAAACAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTGTTTCAACCCAAGAATGGGGTTTGAAATACAAATACTGGTCAAATAACAAAAGCCGAATGTATGTGCTTGAAAACACAGGAGACTTTGTTAGGCAAACTGGAGTGGAGGTGGGAGATAGCATTCATCTTTACGAAGATGAATGCAAGAATGTTCAGTACGTCTCCATCCACCGGCAGGCTCAAGTAAGACCAGTCCATGTTGTCAAGCCCTCCTCAACCTCATATCATCAACAAAACTATACCCATACCAACACCAACACCGCTAAAAGAGACAACACCAACACCGCCATCGATCACACCAACAGCAAAACCCATGCCAACACAACAAGCATATACACGCCATACGCCTACAATGAAACCGGAACCGGTGAAGTTGAGACTTCTTCAGCGGTAGTATTAATACAACAACAACGCAATGAACAACTAGTAGAAACAAACAACATGGTGACAATGTTTACGGATACTGCTTCTTCATATAGACAAAGTGAAGAAGCTAGCAACACCAACAACGACGTCACTAGACAACAACAAACCTCTACTCAACCAGCTATGGCAGGGATATTCGGGTCCTCATCATCATCATCGTCCTCACTGAGTATAGTGAAGATGGCTGAGGATAACTTTGGCGACTGCTATGAAGGCCTTGGGACGCTCCCGGAAGTAGTCGATCGTTTTAATCATTCTCTTTTTTATTTTGACGACATAATAAGGGACGACAAGACATTATAG

Protein Analysis

415

Amino Acids

46.62

Weight (kDa)

6.28

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 131 - 231 7.1e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1035
AccII CGCG 1 cut(s) 272
AciI CCGC 7 cut(s) 42, 122, 270, 272, 780, 804, 908
AclWI GGATC 5 cut(s) 95, 176, 299, 312, 430
AcoI YGGCCR 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 425, 888
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 5 cut(s) 196, 534, 535, 690, 694
AgeI ACCGGT 1 cut(s) 884
AgsI TTSAA 6 cut(s) 33, 66, 285, 525, 544, 590
AhlI ACTAGT 1 cut(s) 943
AluBI AGCT 6 cut(s) 48, 260, 403, 502, 1013, 1067
AluI AGCT 6 cut(s) 48, 260, 403, 502, 1013, 1067
Alw26I GTCTC 4 cut(s) 594, 685, 783, 890
AlwI GGATC 5 cut(s) 95, 176, 299, 312, 430
AoxI GGCC 3 cut(s) 14, 430, 1159
ApeKI GCWGC 4 cut(s) 139, 200, 260, 275
AseI ATTAAT 1 cut(s) 917
AsiGI ACCGGT 1 cut(s) 884
AspS9I GGNCC 2 cut(s) 430, 1086
AsuC2I CCSGG 1 cut(s) 1175
AsuHPI GGTGA 2 cut(s) 899, 976
AsuII TTCGAA 1 cut(s) 393
AsuNHI GCTAGC 2 cut(s) 44, 1013
AvaII GGWCC 1 cut(s) 1086
BamHI GGATCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 1131
BbvI GCAGC 4 cut(s) 151, 187, 247, 262
BccI CCATC 6 cut(s) 67, 211, 316, 692, 815, 1120
BciVI GTATCC 1 cut(s) 973
BcnI CCSGG 1 cut(s) 1175
BcoDI GTCTC 4 cut(s) 594, 685, 783, 890
BcuI ACTAGT 1 cut(s) 943
BfaI CTAG 5 cut(s) 45, 312, 944, 1014, 1038
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 276
BlsI GCNGC 6 cut(s) 141, 202, 262, 271, 274, 277
Bme1390I CCNGG 1 cut(s) 1175
Bme18I GGWCC 1 cut(s) 1086
BmgT120I GGNCC 2 cut(s) 430, 1086
BmiI GGNNCC 3 cut(s) 306, 883, 1087
BmrFI CCNGG 1 cut(s) 1175
BmsI GCATC 1 cut(s) 505
BmtI GCTAGC 2 cut(s) 48, 1017
BpmI CTGGAG 1 cut(s) 639
Bpu10I CCTNAGC 1 cut(s) 1131
Bpu14I TTCGAA 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 684
BpuMI CCSGG 1 cut(s) 1175
Bsa29I ATCGAT 1 cut(s) 810
BsaHI GRCGYC 1 cut(s) 1032
BsaJI CCNNGG 2 cut(s) 270, 1162
BsaWI WCCGGW 2 cut(s) 878, 884
BsaXI ACNNNNNCTCC 4 cut(s) 591, 612, 621, 642
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 534, 535, 690, 694
Bse118I RCCGGY 2 cut(s) 690, 884
Bse1I ACTGG 5 cut(s) 104, 185, 560, 622, 710
Bse3DI GCAATG 1 cut(s) 940
BseCI ATCGAT 1 cut(s) 810
BseDI CCNNGG 2 cut(s) 270, 1162
BseGI GGATG 3 cut(s) 222, 520, 684
BseLI CCNNNNNNNGG 5 cut(s) 196, 534, 535, 690, 694
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 6 cut(s) 101, 236, 371, 494, 1103, 1122
BseNI ACTGG 5 cut(s) 104, 185, 560, 622, 710
BseRI GAGGAG 2 cut(s) 156, 721
BseXI GCAGC 4 cut(s) 151, 187, 247, 262
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 1189
BshFI GGCC 3 cut(s) 16, 432, 1161
BshTI ACCGGT 1 cut(s) 884
BshVI ATCGAT 1 cut(s) 810
BsiEI CGRYCG 1 cut(s) 1189
BsiSI CCGG 7 cut(s) 13, 365, 433, 691, 879, 885, 1175
BslFI GGGAC 4 cut(s) 162, 173, 1180, 1244
BslI CCNNNNNNNGG 5 cut(s) 196, 534, 535, 690, 694
BsmAI GTCTC 4 cut(s) 594, 685, 783, 890
BsmBI CGTCTC 1 cut(s) 685
BsmFI GGGAC 4 cut(s) 162, 173, 1180, 1244
BsmI GAATGC 2 cut(s) 639, 665
BsnI GGCC 3 cut(s) 16, 432, 1161
Bsp119I TTCGAA 1 cut(s) 393
Bsp143I GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
BspACI CCGC 7 cut(s) 42, 122, 270, 272, 780, 804, 908
BspANI GGCC 3 cut(s) 16, 432, 1161
BspCNI CTCAG 6 cut(s) 100, 237, 372, 495, 1104, 1123
BspDI ATCGAT 1 cut(s) 810
BspFNI CGCG 1 cut(s) 272
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 306, 883, 1087
BspOI GCTAGC 2 cut(s) 48, 1017
BspPI GGATC 5 cut(s) 95, 176, 299, 312, 430
BspQI GCTCTTC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 940
BsrFI RCCGGY 2 cut(s) 690, 884
BsrI ACTGG 5 cut(s) 104, 185, 560, 622, 710
BssAI RCCGGY 2 cut(s) 690, 884
BssECI CCNNGG 2 cut(s) 270, 1162
BssMI GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
BssNI GRCGYC 1 cut(s) 1032
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 1162
Bst2BI CACGAG 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 55, 226
BstACI GRCGYC 1 cut(s) 1032
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 5 cut(s) 46, 223, 362, 696, 1015
BstDEI CTNAG 6 cut(s) 87, 245, 380, 503, 1112, 1131
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 222, 520, 684
BstFNI CGCG 1 cut(s) 272
BstKTI GATC 6 cut(s) 103, 184, 307, 425, 814, 1189
BstMAI GTCTC 4 cut(s) 594, 685, 783, 890
BstMBI GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
BstMCI CGRYCG 1 cut(s) 1189
BstMWI GCNNNNNNNGC 4 cut(s) 266, 269, 275, 1158
BstSCI CCNGG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 151, 187, 247, 262
BstX2I RGATCY 2 cut(s) 304, 422
BstYI RGATCY 2 cut(s) 304, 422
Bsu15I ATCGAT 1 cut(s) 810
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 3 cut(s) 16, 432, 1161
BsuTUI ATCGAT 1 cut(s) 810
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 3 cut(s) 222, 520, 684
BtsIMutI CAGTG 2 cut(s) 111, 1109
Cac8I GCNNGC 5 cut(s) 46, 223, 362, 696, 1015
CciI TCATGA 1 cut(s) 97
Cfr10I RCCGGY 2 cut(s) 690, 884
Cfr13I GGNCC 2 cut(s) 430, 1086
Cfr42I CCGCGG 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 810
CseI GACGC 2 cut(s) 164, 1177
Csp6I GTAC 1 cut(s) 676
CspAI ACCGGT 1 cut(s) 884
CviAII CATG 6 cut(s) 98, 150, 172, 716, 833, 961
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 6 cut(s) 87, 245, 380, 503, 1112, 1131
DpnI GATC 6 cut(s) 102, 183, 306, 424, 813, 1188
DpnII GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
EaeI YGGCCR 1 cut(s) 14
Eam1104I CTCTTC 2 cut(s) 55, 226
EarI CTCTTC 2 cut(s) 55, 226
Eco130I CCWWGG 1 cut(s) 1162
Eco147I AGGCCT 1 cut(s) 1161
Eco47I GGWCC 1 cut(s) 1086
Eco57I CTGAAG 2 cut(s) 425, 888
EcoO109I RGGNCCY 1 cut(s) 1086
EcoT14I CCWWGG 1 cut(s) 1162
ErhI CCWWGG 1 cut(s) 1162
Esp3I CGTCTC 1 cut(s) 685
FaeI CATG 6 cut(s) 101, 153, 175, 719, 836, 964
FaqI GGGAC 4 cut(s) 162, 173, 1180, 1244
FatI CATG 6 cut(s) 97, 149, 171, 715, 832, 960
Fnu4HI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 276
FokI GGATG 3 cut(s) 229, 527, 671
Fsp4HI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 276
FspBI CTAG 5 cut(s) 45, 312, 944, 1014, 1038
GluI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 276
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 3 cut(s) 16, 432, 1161
HapII CCGG 7 cut(s) 13, 365, 433, 691, 879, 885, 1175
HgaI GACGC 2 cut(s) 164, 1177
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 6 cut(s) 101, 153, 175, 719, 836, 964
HinfI GANTC 1 cut(s) 507
HpaII CCGG 7 cut(s) 13, 365, 433, 691, 879, 885, 1175
HphI GGTGA 2 cut(s) 899, 976
Hpy166II GTNNAC 1 cut(s) 975
Hpy188I TCNGA 4 cut(s) 246, 325, 447, 484
Hpy188III TCNNGA 3 cut(s) 71, 98, 179
Hpy8I GTNNAC 1 cut(s) 975
Hpy99I CGWCG 1 cut(s) 1034
HpyAV CCTTC 6 cut(s) 39, 295, 452, 479, 485, 1151
HpyCH4IV ACGT 3 cut(s) 417, 678, 1032
HpyCH4V TGCA 2 cut(s) 360, 663
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 269, 275, 1158
HpyF3I CTNAG 6 cut(s) 87, 245, 380, 503, 1112, 1131
HpySE526I ACGT 3 cut(s) 417, 678, 1032
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 6 cut(s) 101, 153, 175, 719, 836, 964
KspI CCGCGG 1 cut(s) 273
Kzo9I GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 1176
Lsp1109I GCAGC 4 cut(s) 151, 187, 247, 262
LweI GCATC 1 cut(s) 505
MaeI CTAG 5 cut(s) 45, 312, 944, 1014, 1038
MaeII ACGT 3 cut(s) 417, 678, 1032
MaeIII GTNAC 3 cut(s) 413, 964, 1033
MalI GATC 6 cut(s) 102, 183, 306, 424, 813, 1188
MboI GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
MflI RGATCY 2 cut(s) 304, 422
MmeI TCCRAC 2 cut(s) 400, 507
MseI TTAA 2 cut(s) 917, 1194
MspA1I CMGCKG 3 cut(s) 272, 403, 908
MspI CCGG 7 cut(s) 13, 365, 433, 691, 879, 885, 1175
MspR9I CCNGG 1 cut(s) 1175
Mva1269I GAATGC 2 cut(s) 639, 665
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 266, 269, 275, 1158
NciI CCSGG 1 cut(s) 1175
NdeII GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
NheI GCTAGC 2 cut(s) 44, 1013
NlaIII CATG 6 cut(s) 101, 153, 175, 719, 836, 964
NlaIV GGNNCC 3 cut(s) 306, 883, 1087
NmuCI GTSAC 3 cut(s) 413, 964, 1033
NspV TTCGAA 1 cut(s) 393
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 1161
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 2 cut(s) 639, 665
PfeI GAWTC 1 cut(s) 507
PfoI TCCNGGA 1 cut(s) 1173
PinAI ACCGGT 1 cut(s) 884
PkrI GCNGC 6 cut(s) 141, 202, 262, 271, 274, 277
Ple19I CGATCG 1 cut(s) 1189
PpuMI RGGWCCY 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 917
Psp5II RGGWCCY 1 cut(s) 1086
PspN4I GGNNCC 3 cut(s) 306, 883, 1087
PspPI GGNCC 2 cut(s) 430, 1086
PspPPI RGGWCCY 1 cut(s) 1086
PsuI RGATCY 2 cut(s) 304, 422
PvuI CGATCG 1 cut(s) 1189
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
SacII CCGCGG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 917, 1194
SatI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 276
Sau3AI GATC 6 cut(s) 100, 181, 304, 422, 811, 1186
Sau96I GGNCC 2 cut(s) 430, 1086
ScrFI CCNGG 1 cut(s) 1175
SfaNI GCATC 1 cut(s) 505
Sfr303I CCGCGG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 393
SgrBI CCGCGG 1 cut(s) 273
SinI GGWCC 1 cut(s) 1086
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
SpeI ACTAGT 1 cut(s) 943
SseBI AGGCCT 1 cut(s) 1161
SsiI CCGC 7 cut(s) 42, 122, 270, 272, 780, 804, 908
SspMI CTAG 5 cut(s) 45, 312, 944, 1014, 1038
StuI AGGCCT 1 cut(s) 1161
StyD4I CCNGG 1 cut(s) 1173
StyI CCWWGG 1 cut(s) 1162
TaiI ACGT 3 cut(s) 420, 681, 1035
TaqI TCGA 3 cut(s) 393, 810, 1185
TauI GCSGC 2 cut(s) 272, 275
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 917, 1194
Tru9I TTAA 2 cut(s) 917, 1194
TscAI CASTG 2 cut(s) 111, 1116
TseFI GTSAC 3 cut(s) 413, 964, 1033
TseI GCWGC 4 cut(s) 139, 200, 260, 275
Tsp45I GTSAC 3 cut(s) 413, 964, 1033
TspDTI ATGAA 9 cut(s) 69, 147, 351, 632, 672, 888, 951, 981, 1170
TspGWI ACGGA 1 cut(s) 992
TspRI CASTG 2 cut(s) 111, 1116
VpaK11BI GGWCC 1 cut(s) 1086
VspI ATTAAT 1 cut(s) 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XspI CTAG 5 cut(s) 45, 312, 944, 1014, 1038
ZraI GACGTC 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.