Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018628.1

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

12236 .. 13212

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018628.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggagaacttccgacaacctttgtttccttccacaacaaccaccatgacctccatttatgaacctatgagttcctccccttcaactcttgctagttcatcctctctgtcctatcattatccagcagttcagtacctaccaccactcaatggcggcagccagctgtactttcaaagctcataccctaattaccagaagcaggcctgtcagccccccttccaatatcccaggtatccagtcctgcttcctaggccacagccaaatccagtctctggagatcaagaagggattgagtccaaggctgcaagagatgagcaaaggatggctcgccaaagaagactctttttaagcagaagcgctgctgactctgggtcctcatcaagttcaatgcagatggatttatgtggtgctgattctgatatgcagaacacagacctctgcacgccggatatgaaggaattgagagtgttgttcaagaaggagttgaagaagagtgatgttggatcctggggcaggattgtcgttccaaagaaagaggcagagaaataccttccaagccttgctgaaaaacaaggcatcgtgctgaggatcagagatgtacattccggtcacgtgtggggcatgaaatacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

211

Amino Acids

23.78

Weight (kDa)

9.18

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	149, 272
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	3 cut(s)	498, 511, 596
AcvI	CACGTG	1 cut(s)	613
AfaI	GTAC	3 cut(s)	134, 167, 600
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	4 cut(s)	149, 199, 272, 513
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	5 cut(s)	84, 173, 387, 475, 487
AhdI	GACNNNNNGTC	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	227, 506
AluBI	AGCT	2 cut(s)	163, 177
AluI	AGCT	2 cut(s)	163, 177
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	3 cut(s)	498, 511, 596
AlwNI	CAGNNNCTG	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	2 cut(s)	201, 251
ApeKI	GCWGC	3 cut(s)	156, 302, 359
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	372
AvrII	CCTAGG	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	503
BbrPI	CACGTG	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	168, 289, 346
BccI	CCATC	2 cut(s)	316, 388
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	2 cut(s)	229, 508
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	2 cut(s)	93, 249
BfoI	RGCGCY	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	4 cut(s)	154, 157, 303, 360
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	4 cut(s)	155, 158, 304, 361
Bme1390I	CCNGG	2 cut(s)	229, 508
Bme18I	GGWCC	1 cut(s)	372
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	373, 505
BmrFI	CCNGG	2 cut(s)	229, 508
BmsI	GCATC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	613
BsaJI	CCNNGG	4 cut(s)	227, 248, 297, 507
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 199, 272, 513
Bse1I	ACTGG	2 cut(s)	236, 266
BseBI	CCWGG	2 cut(s)	229, 508
BseDI	CCNNGG	4 cut(s)	227, 248, 297, 507
BseGI	GGATG	2 cut(s)	98, 327
BseLI	CCNNNNNNNGG	4 cut(s)	149, 199, 272, 513
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	2 cut(s)	236, 266
BseXI	GCAGC	3 cut(s)	168, 289, 346
BsgI	GTGCAG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	203, 253
BsiSI	CCGG	2 cut(s)	446, 606
BslI	CCNNNNNNNGG	4 cut(s)	149, 199, 272, 513
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	203, 253
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	277, 503, 588
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	203, 253
BspCNI	CTCAG	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	373, 505
BspPI	GGATC	3 cut(s)	498, 511, 596
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	236, 266
BssECI	CCNNGG	4 cut(s)	227, 248, 297, 507
BssMI	GATC	3 cut(s)	277, 503, 588
BssT1I	CCWWGG	2 cut(s)	248, 297
Bst2UI	CCWGG	2 cut(s)	229, 508
Bst6I	CTCTTC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	598
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	4 cut(s)	161, 201, 328, 443
BstDEI	CTNAG	1 cut(s)	584
BstENI	CCTNNNNNAGG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	98, 327
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	280, 506, 591
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	277, 503, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	229, 508
BstSCI	CCNGG	2 cut(s)	227, 506
BstV1I	GCAGC	3 cut(s)	168, 289, 346
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	203, 253
BtsCI	GGATG	2 cut(s)	98, 327
Cac8I	GCNNGC	4 cut(s)	161, 201, 328, 443
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	3 cut(s)	133, 166, 599
CviAII	CATG	2 cut(s)	46, 622
CviQI	GTAC	3 cut(s)	133, 166, 599
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	3 cut(s)	279, 505, 590
DpnII	GATC	3 cut(s)	277, 503, 588
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	485
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	248, 297
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	372
Eco47III	AGCGCT	1 cut(s)	358
Eco72I	CACGTG	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	227, 506
EcoT14I	CCWWGG	2 cut(s)	248, 297
ErhI	CCWWGG	2 cut(s)	248, 297
FaeI	CATG	2 cut(s)	49, 625
FaiI	YATR	8 cut(s)	47, 60, 68, 181, 403, 422, 452, 623
FatI	CATG	2 cut(s)	45, 621
Fnu4HI	GCNGC	4 cut(s)	154, 157, 303, 360
FokI	GGATG	2 cut(s)	85, 334
Fsp4HI	GCNGC	4 cut(s)	154, 157, 303, 360
FspBI	CTAG	2 cut(s)	93, 249
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	154, 157, 303, 360
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	203, 253
HapII	CCGG	2 cut(s)	446, 606
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	49, 625
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	4 cut(s)	293, 339, 365, 413
HpaII	CCGG	2 cut(s)	446, 606
Hpy188I	TCNGA	3 cut(s)	14, 418, 593
Hpy188III	TCNNGA	3 cut(s)	273, 281, 475
HpyAV	CCTTC	7 cut(s)	39, 90, 226, 278, 448, 472, 560
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	4 cut(s)	305, 391, 424, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	2 cut(s)	49, 625
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	277, 503, 588
Lsp1109I	GCAGC	3 cut(s)	168, 289, 346
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	2 cut(s)	93, 249
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	3 cut(s)	279, 505, 590
MboI	GATC	3 cut(s)	277, 503, 588
MboII	GAAGA	3 cut(s)	348, 499, 502
MflI	RGATCY	1 cut(s)	503
MluCI	AATT	2 cut(s)	187, 458
MlyI	GAGTC	3 cut(s)	302, 333, 359
MmeI	TCCRAC	2 cut(s)	37, 481
MnlI	CCTC	7 cut(s)	61, 85, 112, 385, 446, 529, 579
MseI	TTAA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	2 cut(s)	446, 606
MspR9I	CCNGG	2 cut(s)	229, 508
MvaI	CCWGG	2 cut(s)	229, 508
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	3 cut(s)	277, 503, 588
NlaIII	CATG	2 cut(s)	49, 625
NlaIV	GGNNCC	2 cut(s)	373, 505
NmuCI	GTSAC	1 cut(s)	608
PceI	AGGCCT	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	413
PflMI	CCANNNNNTGG	2 cut(s)	149, 272
PkrI	GCNGC	4 cut(s)	155, 158, 304, 361
PleI	GAGTC	3 cut(s)	301, 333, 359
PmaCI	CACGTG	1 cut(s)	613
PmlI	CACGTG	1 cut(s)	613
PpsI	GAGTC	3 cut(s)	301, 333, 359
Ppu21I	YACGTR	1 cut(s)	613
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	227, 506
PspCI	CACGTG	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	227, 506
PspN4I	GGNNCC	2 cut(s)	373, 505
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	3 cut(s)	134, 167, 600
RsaNI	GTAC	3 cut(s)	133, 166, 599
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	4 cut(s)	154, 157, 303, 360
Sau3AI	GATC	3 cut(s)	277, 503, 588
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	3 cut(s)	302, 333, 359
ScrFI	CCNGG	2 cut(s)	229, 508
SfaNI	GCATC	1 cut(s)	585
SinI	GGWCC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	187, 458
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	2 cut(s)	93, 249
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	227, 506
StyI	CCWWGG	2 cut(s)	248, 297
TaiI	ACGT	1 cut(s)	615
TasI	AATT	2 cut(s)	187, 458
TatI	WGTACW	2 cut(s)	165, 598
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	3 cut(s)	156, 302, 359
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	3 cut(s)	75, 87, 467
Van91I	CCANNNNNTGG	2 cut(s)	149, 272
VpaK11BI	GGWCC	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	511
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	2 cut(s)	93, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.