B3 domain-containing transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 131 - 231 | 1.8e-14 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1044 |
| AccII | CGCG | 2 cut(s) | 175, 272 |
| AciI | CCGC | 5 cut(s) | 13, 270, 272, 813, 917 |
| AclWI | GGATC | 7 cut(s) | 95, 176, 299, 312, 430, 983, 996 |
| AcuI | CTGAAG | 2 cut(s) | 425, 897 |
| AcyI | GRCGYC | 1 cut(s) | 1041 |
| AfaI | GTAC | 2 cut(s) | 554, 711 |
| AfeI | AGCGCT | 1 cut(s) | 778 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 196, 534, 535, 687, 691 |
| AflIII | ACRYGT | 2 cut(s) | 173, 712 |
| AgeI | ACCGGT | 1 cut(s) | 893 |
| AgsI | TTSAA | 6 cut(s) | 33, 66, 285, 525, 544, 590 |
| AhlI | ACTAGT | 1 cut(s) | 952 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 178, 210 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1078, 1110 |
| AluBI | AGCT | 6 cut(s) | 48, 260, 403, 502, 1022, 1076 |
| AluI | AGCT | 6 cut(s) | 48, 260, 403, 502, 1022, 1076 |
| Alw26I | GTCTC | 3 cut(s) | 594, 780, 899 |
| AlwI | GGATC | 7 cut(s) | 95, 176, 299, 312, 430, 983, 996 |
| Aor51HI | AGCGCT | 1 cut(s) | 778 |
| AoxI | GGCC | 2 cut(s) | 430, 1168 |
| ApeKI | GCWGC | 4 cut(s) | 139, 200, 260, 400 |
| AsiGI | ACCGGT | 1 cut(s) | 893 |
| AspLEI | GCGC | 1 cut(s) | 779 |
| AspS9I | GGNCC | 1 cut(s) | 430 |
| AsuC2I | CCSGG | 1 cut(s) | 1184 |
| AsuHPI | GGTGA | 2 cut(s) | 908, 1110 |
| AsuNHI | GCTAGC | 2 cut(s) | 44, 1022 |
| BamHI | GGATCC | 2 cut(s) | 304, 988 |
| BanII | GRGCYC | 1 cut(s) | 726 |
| BauI | CACGAG | 1 cut(s) | 264 |
| BbvI | GCAGC | 4 cut(s) | 151, 187, 247, 412 |
| BccI | CCATC | 6 cut(s) | 67, 211, 316, 689, 824, 1129 |
| BcnI | CCSGG | 1 cut(s) | 1184 |
| BcoDI | GTCTC | 3 cut(s) | 594, 780, 899 |
| BcuI | ACTAGT | 1 cut(s) | 952 |
| BfaI | CTAG | 5 cut(s) | 45, 312, 953, 1023, 1047 |
| BfmI | CTRYAG | 1 cut(s) | 1253 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BisI | GCNGC | 6 cut(s) | 140, 201, 261, 270, 273, 401 |
| BlsI | GCNGC | 6 cut(s) | 141, 202, 262, 271, 274, 402 |
| BmcAI | AGTACT | 1 cut(s) | 554 |
| Bme1390I | CCNGG | 1 cut(s) | 1184 |
| BmgT120I | GGNCC | 1 cut(s) | 430 |
| BmiI | GGNNCC | 4 cut(s) | 306, 892, 990, 1096 |
| BmrFI | CCNGG | 1 cut(s) | 1184 |
| BmsI | GCATC | 1 cut(s) | 505 |
| BmtI | GCTAGC | 2 cut(s) | 48, 1026 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 713, 745 |
| BpmI | CTGGAG | 1 cut(s) | 639 |
| BpuEI | CTTGAG | 2 cut(s) | 681, 923 |
| BpuMI | CCSGG | 1 cut(s) | 1184 |
| Bsa29I | ATCGAT | 1 cut(s) | 819 |
| BsaHI | GRCGYC | 1 cut(s) | 1041 |
| BsaJI | CCNNGG | 2 cut(s) | 270, 1171 |
| BsaWI | WCCGGW | 1 cut(s) | 893 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 591, 612, 621, 642 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 196, 534, 535, 687, 691 |
| Bse118I | RCCGGY | 2 cut(s) | 687, 893 |
| Bse1I | ACTGG | 4 cut(s) | 104, 560, 622, 892 |
| BseCI | ATCGAT | 1 cut(s) | 819 |
| BseDI | CCNNGG | 2 cut(s) | 270, 1171 |
| BseGI | GGATG | 5 cut(s) | 222, 353, 520, 681, 1092 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 196, 534, 535, 687, 691 |
| BseMII | CTCAG | 5 cut(s) | 101, 236, 371, 494, 1131 |
| BseNI | ACTGG | 4 cut(s) | 104, 560, 622, 892 |
| BseRI | GAGGAG | 2 cut(s) | 156, 718 |
| BseXI | GCAGC | 4 cut(s) | 151, 187, 247, 412 |
| BsgI | GTGCAG | 1 cut(s) | 343 |
| Bsh1236I | CGCG | 2 cut(s) | 175, 272 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1198 |
| BshFI | GGCC | 2 cut(s) | 432, 1170 |
| BshTI | ACCGGT | 1 cut(s) | 893 |
| BshVI | ATCGAT | 1 cut(s) | 819 |
| BsiEI | CGRYCG | 1 cut(s) | 1198 |
| BsiSI | CCGG | 5 cut(s) | 365, 433, 688, 894, 1184 |
| BslFI | GGGAC | 3 cut(s) | 162, 1189, 1253 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 196, 534, 535, 687, 691 |
| BsmAI | GTCTC | 3 cut(s) | 594, 780, 899 |
| BsmFI | GGGAC | 3 cut(s) | 162, 1189, 1253 |
| BsmI | GAATGC | 1 cut(s) | 639 |
| BsnI | GGCC | 2 cut(s) | 432, 1170 |
| Bsp1286I | GDGCHC | 1 cut(s) | 726 |
| Bsp143I | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| BspACI | CCGC | 5 cut(s) | 13, 270, 272, 813, 917 |
| BspANI | GGCC | 2 cut(s) | 432, 1170 |
| BspCNI | CTCAG | 5 cut(s) | 100, 237, 372, 495, 1132 |
| BspDI | ATCGAT | 1 cut(s) | 819 |
| BspFNI | CGCG | 2 cut(s) | 175, 272 |
| BspHI | TCATGA | 1 cut(s) | 97 |
| BspLI | GGNNCC | 4 cut(s) | 306, 892, 990, 1096 |
| BspOI | GCTAGC | 2 cut(s) | 48, 1026 |
| BspPI | GGATC | 7 cut(s) | 95, 176, 299, 312, 430, 983, 996 |
| BspQI | GCTCTTC | 1 cut(s) | 55 |
| BsrFI | RCCGGY | 2 cut(s) | 687, 893 |
| BsrI | ACTGG | 4 cut(s) | 104, 560, 622, 892 |
| BssAI | RCCGGY | 2 cut(s) | 687, 893 |
| BssECI | CCNNGG | 2 cut(s) | 270, 1171 |
| BssMI | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| BssNI | GRCGYC | 1 cut(s) | 1041 |
| BssSI | CACGAG | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 1 cut(s) | 1171 |
| Bst2BI | CACGAG | 1 cut(s) | 264 |
| Bst6I | CTCTTC | 2 cut(s) | 55, 226 |
| BstACI | GRCGYC | 1 cut(s) | 1041 |
| BstC8I | GCNNGC | 5 cut(s) | 46, 223, 362, 693, 1024 |
| BstDEI | CTNAG | 5 cut(s) | 87, 245, 380, 503, 1140 |
| BstDSI | CCRYGG | 1 cut(s) | 270 |
| BstF5I | GGATG | 5 cut(s) | 222, 353, 520, 681, 1092 |
| BstFNI | CGCG | 2 cut(s) | 175, 272 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 1 cut(s) | 779 |
| BstKTI | GATC | 7 cut(s) | 103, 184, 307, 425, 707, 823, 991 |
| BstMAI | GTCTC | 3 cut(s) | 594, 780, 899 |
| BstMBI | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| BstMCI | CGRYCG | 1 cut(s) | 1198 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 266, 269, 1167 |
| BstNSI | RCATGY | 2 cut(s) | 716, 973 |
| BstSCI | CCNGG | 1 cut(s) | 1182 |
| BstSFI | CTRYAG | 1 cut(s) | 1253 |
| BstUI | CGCG | 2 cut(s) | 175, 272 |
| BstV1I | GCAGC | 4 cut(s) | 151, 187, 247, 412 |
| BstX2I | RGATCY | 3 cut(s) | 304, 422, 988 |
| BstYI | RGATCY | 3 cut(s) | 304, 422, 988 |
| Bsu15I | ATCGAT | 1 cut(s) | 819 |
| BsuRI | GGCC | 2 cut(s) | 432, 1170 |
| BsuTUI | ATCGAT | 1 cut(s) | 819 |
| BtgI | CCRYGG | 1 cut(s) | 270 |
| BtsCI | GGATG | 5 cut(s) | 222, 353, 520, 681, 1092 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 5 cut(s) | 46, 223, 362, 693, 1024 |
| CciI | TCATGA | 1 cut(s) | 97 |
| CfoI | GCGC | 1 cut(s) | 779 |
| Cfr10I | RCCGGY | 2 cut(s) | 687, 893 |
| Cfr13I | GGNCC | 1 cut(s) | 430 |
| Cfr42I | CCGCGG | 1 cut(s) | 273 |
| ClaI | ATCGAT | 1 cut(s) | 819 |
| CseI | GACGC | 2 cut(s) | 164, 1186 |
| Csp6I | GTAC | 2 cut(s) | 553, 710 |
| CspAI | ACCGGT | 1 cut(s) | 893 |
| CviAII | CATG | 5 cut(s) | 98, 150, 713, 842, 970 |
| CviQI | GTAC | 2 cut(s) | 553, 710 |
| DdeI | CTNAG | 5 cut(s) | 87, 245, 380, 503, 1140 |
| DpnI | GATC | 7 cut(s) | 102, 183, 306, 424, 706, 822, 990 |
| DpnII | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| DraI | TTTAAA | 1 cut(s) | 394 |
| Eam1104I | CTCTTC | 2 cut(s) | 55, 226 |
| EarI | CTCTTC | 2 cut(s) | 55, 226 |
| Eco130I | CCWWGG | 1 cut(s) | 1171 |
| Eco147I | AGGCCT | 1 cut(s) | 1170 |
| Eco24I | GRGCYC | 1 cut(s) | 726 |
| Eco47III | AGCGCT | 1 cut(s) | 778 |
| Eco57I | CTGAAG | 2 cut(s) | 425, 897 |
| EcoT14I | CCWWGG | 1 cut(s) | 1171 |
| EcoT38I | GRGCYC | 1 cut(s) | 726 |
| ErhI | CCWWGG | 1 cut(s) | 1171 |
| FaeI | CATG | 5 cut(s) | 101, 153, 716, 845, 973 |
| FaqI | GGGAC | 3 cut(s) | 162, 1189, 1253 |
| FatI | CATG | 5 cut(s) | 97, 149, 712, 841, 969 |
| FauNDI | CATATG | 1 cut(s) | 871 |
| Fnu4HI | GCNGC | 6 cut(s) | 140, 201, 261, 270, 273, 401 |
| FokI | GGATG | 5 cut(s) | 229, 340, 527, 668, 1099 |
| FriOI | GRGCYC | 1 cut(s) | 726 |
| Fsp4HI | GCNGC | 6 cut(s) | 140, 201, 261, 270, 273, 401 |
| FspBI | CTAG | 5 cut(s) | 45, 312, 953, 1023, 1047 |
| GlaI | GCGC | 1 cut(s) | 778 |
| GluI | GCNGC | 6 cut(s) | 140, 201, 261, 270, 273, 401 |
| GsuI | CTGGAG | 1 cut(s) | 639 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HaeIII | GGCC | 2 cut(s) | 432, 1170 |
| HapII | CCGG | 5 cut(s) | 365, 433, 688, 894, 1184 |
| HgaI | GACGC | 2 cut(s) | 164, 1186 |
| HhaI | GCGC | 1 cut(s) | 779 |
| Hin1I | GRCGYC | 1 cut(s) | 1041 |
| Hin1II | CATG | 5 cut(s) | 101, 153, 716, 845, 973 |
| Hin6I | GCGC | 1 cut(s) | 777 |
| HinP1I | GCGC | 1 cut(s) | 777 |
| HinfI | GANTC | 2 cut(s) | 507, 667 |
| HpaII | CCGG | 5 cut(s) | 365, 433, 688, 894, 1184 |
| HphI | GGTGA | 2 cut(s) | 908, 1110 |
| Hpy166II | GTNNAC | 2 cut(s) | 899, 984 |
| Hpy188I | TCNGA | 4 cut(s) | 246, 325, 447, 484 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 98, 179 |
| Hpy8I | GTNNAC | 2 cut(s) | 899, 984 |
| Hpy99I | CGWCG | 1 cut(s) | 1043 |
| HpyAV | CCTTC | 6 cut(s) | 39, 295, 452, 479, 485, 1160 |
| HpyCH4IV | ACGT | 2 cut(s) | 417, 1041 |
| HpyCH4V | TGCA | 2 cut(s) | 360, 663 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 266, 269, 1167 |
| HpyF3I | CTNAG | 5 cut(s) | 87, 245, 380, 503, 1140 |
| HpySE526I | ACGT | 2 cut(s) | 417, 1041 |
| Hsp92I | GRCGYC | 1 cut(s) | 1041 |
| Hsp92II | CATG | 5 cut(s) | 101, 153, 716, 845, 973 |
| HspAI | GCGC | 1 cut(s) | 777 |
| KspI | CCGCGG | 1 cut(s) | 273 |
| Kzo9I | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| LguI | GCTCTTC | 1 cut(s) | 55 |
| LmnI | GCTCC | 1 cut(s) | 1185 |
| Lsp1109I | GCAGC | 4 cut(s) | 151, 187, 247, 412 |
| LweI | GCATC | 1 cut(s) | 505 |
| MaeI | CTAG | 5 cut(s) | 45, 312, 953, 1023, 1047 |
| MaeII | ACGT | 2 cut(s) | 417, 1041 |
| MaeIII | GTNAC | 2 cut(s) | 413, 1042 |
| MalI | GATC | 7 cut(s) | 102, 183, 306, 424, 706, 822, 990 |
| MboI | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| MflI | RGATCY | 3 cut(s) | 304, 422, 988 |
| MhlI | GDGCHC | 1 cut(s) | 726 |
| MluI | ACGCGT | 1 cut(s) | 173 |
| MmeI | TCCRAC | 2 cut(s) | 400, 507 |
| MseI | TTAA | 2 cut(s) | 393, 1203 |
| MspA1I | CMGCKG | 3 cut(s) | 272, 403, 917 |
| MspI | CCGG | 5 cut(s) | 365, 433, 688, 894, 1184 |
| MspR9I | CCNGG | 1 cut(s) | 1184 |
| Mva1269I | GAATGC | 1 cut(s) | 639 |
| MvnI | CGCG | 2 cut(s) | 175, 272 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 266, 269, 1167 |
| NciI | CCSGG | 1 cut(s) | 1184 |
| NdeI | CATATG | 1 cut(s) | 871 |
| NdeII | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| NheI | GCTAGC | 2 cut(s) | 44, 1022 |
| NlaIII | CATG | 5 cut(s) | 101, 153, 716, 845, 973 |
| NlaIV | GGNNCC | 4 cut(s) | 306, 892, 990, 1096 |
| NmuCI | GTSAC | 2 cut(s) | 413, 1042 |
| NspI | RCATGY | 2 cut(s) | 716, 973 |
| PagI | TCATGA | 1 cut(s) | 97 |
| PceI | AGGCCT | 1 cut(s) | 1170 |
| PciI | ACATGT | 1 cut(s) | 712 |
| PciSI | GCTCTTC | 1 cut(s) | 55 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1118 |
| PctI | GAATGC | 1 cut(s) | 639 |
| PfeI | GAWTC | 2 cut(s) | 507, 667 |
| PfoI | TCCNGGA | 1 cut(s) | 1182 |
| PinAI | ACCGGT | 1 cut(s) | 893 |
| PkrI | GCNGC | 6 cut(s) | 141, 202, 262, 271, 274, 402 |
| PscI | ACATGT | 1 cut(s) | 712 |
| PspN4I | GGNNCC | 4 cut(s) | 306, 892, 990, 1096 |
| PspPI | GGNCC | 1 cut(s) | 430 |
| PsuI | RGATCY | 3 cut(s) | 304, 422, 988 |
| PvuII | CAGCTG | 1 cut(s) | 403 |
| RsaI | GTAC | 2 cut(s) | 554, 711 |
| RsaNI | GTAC | 2 cut(s) | 553, 710 |
| SacII | CCGCGG | 1 cut(s) | 273 |
| SapI | GCTCTTC | 1 cut(s) | 55 |
| SaqAI | TTAA | 2 cut(s) | 393, 1203 |
| SatI | GCNGC | 6 cut(s) | 140, 201, 261, 270, 273, 401 |
| Sau3AI | GATC | 7 cut(s) | 100, 181, 304, 422, 704, 820, 988 |
| Sau96I | GGNCC | 1 cut(s) | 430 |
| ScaI | AGTACT | 1 cut(s) | 554 |
| ScrFI | CCNGG | 1 cut(s) | 1184 |
| SduI | GDGCHC | 1 cut(s) | 726 |
| SfaNI | GCATC | 1 cut(s) | 505 |
| SfcI | CTRYAG | 1 cut(s) | 1253 |
| Sfr303I | CCGCGG | 1 cut(s) | 273 |
| SgrBI | CCGCGG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 2 cut(s) | 696, 902 |
| SmoI | CTYRAG | 2 cut(s) | 696, 902 |
| SpeI | ACTAGT | 1 cut(s) | 952 |
| SseBI | AGGCCT | 1 cut(s) | 1170 |
| SsiI | CCGC | 5 cut(s) | 13, 270, 272, 813, 917 |
| SspMI | CTAG | 5 cut(s) | 45, 312, 953, 1023, 1047 |
| StuI | AGGCCT | 1 cut(s) | 1170 |
| StyD4I | CCNGG | 1 cut(s) | 1182 |
| StyI | CCWWGG | 1 cut(s) | 1171 |
| TaiI | ACGT | 2 cut(s) | 420, 1044 |
| TaqI | TCGA | 2 cut(s) | 720, 819 |
| TaqII | GACCGA | 1 cut(s) | 1184 |
| TatI | WGTACW | 2 cut(s) | 552, 709 |
| TauI | GCSGC | 2 cut(s) | 272, 275 |
| TfiI | GAWTC | 2 cut(s) | 507, 667 |
| Tru1I | TTAA | 2 cut(s) | 393, 1203 |
| Tru9I | TTAA | 2 cut(s) | 393, 1203 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TseFI | GTSAC | 2 cut(s) | 413, 1042 |
| TseI | GCWGC | 4 cut(s) | 139, 200, 260, 400 |
| Tsp45I | GTSAC | 2 cut(s) | 413, 1042 |
| TspDTI | ATGAA | 8 cut(s) | 69, 147, 351, 632, 897, 960, 990, 1179 |
| TspGWI | ACGGA | 1 cut(s) | 1001 |
| TspRI | CASTG | 1 cut(s) | 111 |
| XceI | RCATGY | 2 cut(s) | 716, 973 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 132 |
| XspI | CTAG | 5 cut(s) | 45, 312, 953, 1023, 1047 |
| ZraI | GACGTC | 1 cut(s) | 1042 |
| ZrmI | AGTACT | 1 cut(s) | 554 |