RLG00000031603

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
6621340 .. 6623762
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031603

Sequence Viewer

Length: 1257 bp
ATGGAGAACTTCCGCCCACCTTTCACACCTTCAACAACTATCGCTAGCTCTTCTTCTCCATCTTCAACTCTGGAAAGTTCATCATCTCAGTTGTATCATGATCCAGTGGTTTGCCACCTACCACCACACCCACATTGGCAGCAACCACCATGTTTTTCATATCCTCCTCCCACGCGTCCCGATCCAATCCCAAGTTCGGCTGCGTGGGAAACAAGGATGGCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGGTTCTTCAAGGGTGGCAGTAGAGAAGGATCCATCTAGTGCTGTTTCTGAAACGCCGAATGAACAATACATCTACTCATCCTGCACGCCGGATAACAAGAAACTGAGATTGTTGTTTAAAAAGCAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTCTTTCAACCCAAGTGTGGGCTTTGAAATACAAGTACTGGTCAAATAACAAAAGCCGAATGTATGTGCTTGAAAACACAGGAGACTTTGTTAGTCAAACTGGAGTGGAGGTGGGAGATAGCATTCATCTTTACGAAGATAAATGCAAGAATCTTTACGCCTCCATCCACCGGCAGGCTCAAGTAAGATCAGTACATGTTGTCGAGCCCTCCTCAACCTCATATCATCAACAAAACTATACCCATACCAACACCAACAGCGCTAAAAGAGACAACACCAACACCAAAACCAACACCGCCATCGATCACACCAACAGCAAAACCCATGCCAACACCACAAGCATATACACGCCATATGCCTACAATGAAACTGGAACCGGTGAACTTGAGACTTCTTCAGCGGTAGTATTACAACAACAACAACACAATGAACAACTAGTAGAAACAAACAACATGCTGACATTGTTTACGGATCCTGCTTCTTCATATAGACAAAGTGAAGAAGCTAGCAACACCAACAACGACGTCACTAGACAACAACAAACCTCTACTCAACCAGCTATGGCAGGGATGTTCGGTTCCTCATCATCATCATCGTCCTCACCGAGAATAGTGAAGATGGCTGAGTATAACTTTGGCGACTGCTATGAAGGCCTTGGGACGCTCCCGGAAGTAGTCGGTCGTTTTAATCATTCACTTTTTGATTTTGACGACATAATAAGGGACGACAAGACGCTATAG

Protein Analysis

419

Amino Acids

46.75

Weight (kDa)

7.22

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 131 - 231 1.8e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1044
AccII CGCG 2 cut(s) 175, 272
AciI CCGC 5 cut(s) 13, 270, 272, 813, 917
AclWI GGATC 7 cut(s) 95, 176, 299, 312, 430, 983, 996
AcuI CTGAAG 2 cut(s) 425, 897
AcyI GRCGYC 1 cut(s) 1041
AfaI GTAC 2 cut(s) 554, 711
AfeI AGCGCT 1 cut(s) 778
AfiI CCNNNNNNNGG 5 cut(s) 196, 534, 535, 687, 691
AflIII ACRYGT 2 cut(s) 173, 712
AgeI ACCGGT 1 cut(s) 893
AgsI TTSAA 6 cut(s) 33, 66, 285, 525, 544, 590
AhlI ACTAGT 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AloI GAACNNNNNNTCC 2 cut(s) 1078, 1110
AluBI AGCT 6 cut(s) 48, 260, 403, 502, 1022, 1076
AluI AGCT 6 cut(s) 48, 260, 403, 502, 1022, 1076
Alw26I GTCTC 3 cut(s) 594, 780, 899
AlwI GGATC 7 cut(s) 95, 176, 299, 312, 430, 983, 996
Aor51HI AGCGCT 1 cut(s) 778
AoxI GGCC 2 cut(s) 430, 1168
ApeKI GCWGC 4 cut(s) 139, 200, 260, 400
AsiGI ACCGGT 1 cut(s) 893
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 430
AsuC2I CCSGG 1 cut(s) 1184
AsuHPI GGTGA 2 cut(s) 908, 1110
AsuNHI GCTAGC 2 cut(s) 44, 1022
BamHI GGATCC 2 cut(s) 304, 988
BanII GRGCYC 1 cut(s) 726
BauI CACGAG 1 cut(s) 264
BbvI GCAGC 4 cut(s) 151, 187, 247, 412
BccI CCATC 6 cut(s) 67, 211, 316, 689, 824, 1129
BcnI CCSGG 1 cut(s) 1184
BcoDI GTCTC 3 cut(s) 594, 780, 899
BcuI ACTAGT 1 cut(s) 952
BfaI CTAG 5 cut(s) 45, 312, 953, 1023, 1047
BfmI CTRYAG 1 cut(s) 1253
BfoI RGCGCY 1 cut(s) 780
BisI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 401
BlsI GCNGC 6 cut(s) 141, 202, 262, 271, 274, 402
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 1 cut(s) 1184
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 4 cut(s) 306, 892, 990, 1096
BmrFI CCNGG 1 cut(s) 1184
BmsI GCATC 1 cut(s) 505
BmtI GCTAGC 2 cut(s) 48, 1026
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 681, 923
BpuMI CCSGG 1 cut(s) 1184
Bsa29I ATCGAT 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 1041
BsaJI CCNNGG 2 cut(s) 270, 1171
BsaWI WCCGGW 1 cut(s) 893
BsaXI ACNNNNNCTCC 4 cut(s) 591, 612, 621, 642
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 534, 535, 687, 691
Bse118I RCCGGY 2 cut(s) 687, 893
Bse1I ACTGG 4 cut(s) 104, 560, 622, 892
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 2 cut(s) 270, 1171
BseGI GGATG 5 cut(s) 222, 353, 520, 681, 1092
BseLI CCNNNNNNNGG 5 cut(s) 196, 534, 535, 687, 691
BseMII CTCAG 5 cut(s) 101, 236, 371, 494, 1131
BseNI ACTGG 4 cut(s) 104, 560, 622, 892
BseRI GAGGAG 2 cut(s) 156, 718
BseXI GCAGC 4 cut(s) 151, 187, 247, 412
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 2 cut(s) 175, 272
Bsh1285I CGRYCG 1 cut(s) 1198
BshFI GGCC 2 cut(s) 432, 1170
BshTI ACCGGT 1 cut(s) 893
BshVI ATCGAT 1 cut(s) 819
BsiEI CGRYCG 1 cut(s) 1198
BsiSI CCGG 5 cut(s) 365, 433, 688, 894, 1184
BslFI GGGAC 3 cut(s) 162, 1189, 1253
BslI CCNNNNNNNGG 5 cut(s) 196, 534, 535, 687, 691
BsmAI GTCTC 3 cut(s) 594, 780, 899
BsmFI GGGAC 3 cut(s) 162, 1189, 1253
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 2 cut(s) 432, 1170
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
BspACI CCGC 5 cut(s) 13, 270, 272, 813, 917
BspANI GGCC 2 cut(s) 432, 1170
BspCNI CTCAG 5 cut(s) 100, 237, 372, 495, 1132
BspDI ATCGAT 1 cut(s) 819
BspFNI CGCG 2 cut(s) 175, 272
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 4 cut(s) 306, 892, 990, 1096
BspOI GCTAGC 2 cut(s) 48, 1026
BspPI GGATC 7 cut(s) 95, 176, 299, 312, 430, 983, 996
BspQI GCTCTTC 1 cut(s) 55
BsrFI RCCGGY 2 cut(s) 687, 893
BsrI ACTGG 4 cut(s) 104, 560, 622, 892
BssAI RCCGGY 2 cut(s) 687, 893
BssECI CCNNGG 2 cut(s) 270, 1171
BssMI GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
BssNI GRCGYC 1 cut(s) 1041
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 1171
Bst2BI CACGAG 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 55, 226
BstACI GRCGYC 1 cut(s) 1041
BstC8I GCNNGC 5 cut(s) 46, 223, 362, 693, 1024
BstDEI CTNAG 5 cut(s) 87, 245, 380, 503, 1140
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 5 cut(s) 222, 353, 520, 681, 1092
BstFNI CGCG 2 cut(s) 175, 272
BstH2I RGCGCY 1 cut(s) 780
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 7 cut(s) 103, 184, 307, 425, 707, 823, 991
BstMAI GTCTC 3 cut(s) 594, 780, 899
BstMBI GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
BstMCI CGRYCG 1 cut(s) 1198
BstMWI GCNNNNNNNGC 3 cut(s) 266, 269, 1167
BstNSI RCATGY 2 cut(s) 716, 973
BstSCI CCNGG 1 cut(s) 1182
BstSFI CTRYAG 1 cut(s) 1253
BstUI CGCG 2 cut(s) 175, 272
BstV1I GCAGC 4 cut(s) 151, 187, 247, 412
BstX2I RGATCY 3 cut(s) 304, 422, 988
BstYI RGATCY 3 cut(s) 304, 422, 988
Bsu15I ATCGAT 1 cut(s) 819
BsuRI GGCC 2 cut(s) 432, 1170
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 5 cut(s) 222, 353, 520, 681, 1092
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 5 cut(s) 46, 223, 362, 693, 1024
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 779
Cfr10I RCCGGY 2 cut(s) 687, 893
Cfr13I GGNCC 1 cut(s) 430
Cfr42I CCGCGG 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 819
CseI GACGC 2 cut(s) 164, 1186
Csp6I GTAC 2 cut(s) 553, 710
CspAI ACCGGT 1 cut(s) 893
CviAII CATG 5 cut(s) 98, 150, 713, 842, 970
CviQI GTAC 2 cut(s) 553, 710
DdeI CTNAG 5 cut(s) 87, 245, 380, 503, 1140
DpnI GATC 7 cut(s) 102, 183, 306, 424, 706, 822, 990
DpnII GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
DraI TTTAAA 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 55, 226
EarI CTCTTC 2 cut(s) 55, 226
Eco130I CCWWGG 1 cut(s) 1171
Eco147I AGGCCT 1 cut(s) 1170
Eco24I GRGCYC 1 cut(s) 726
Eco47III AGCGCT 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 425, 897
EcoT14I CCWWGG 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 1171
FaeI CATG 5 cut(s) 101, 153, 716, 845, 973
FaqI GGGAC 3 cut(s) 162, 1189, 1253
FatI CATG 5 cut(s) 97, 149, 712, 841, 969
FauNDI CATATG 1 cut(s) 871
Fnu4HI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 401
FokI GGATG 5 cut(s) 229, 340, 527, 668, 1099
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 401
FspBI CTAG 5 cut(s) 45, 312, 953, 1023, 1047
GlaI GCGC 1 cut(s) 778
GluI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 401
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 780
HaeIII GGCC 2 cut(s) 432, 1170
HapII CCGG 5 cut(s) 365, 433, 688, 894, 1184
HgaI GACGC 2 cut(s) 164, 1186
HhaI GCGC 1 cut(s) 779
Hin1I GRCGYC 1 cut(s) 1041
Hin1II CATG 5 cut(s) 101, 153, 716, 845, 973
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HinfI GANTC 2 cut(s) 507, 667
HpaII CCGG 5 cut(s) 365, 433, 688, 894, 1184
HphI GGTGA 2 cut(s) 908, 1110
Hpy166II GTNNAC 2 cut(s) 899, 984
Hpy188I TCNGA 4 cut(s) 246, 325, 447, 484
Hpy188III TCNNGA 3 cut(s) 71, 98, 179
Hpy8I GTNNAC 2 cut(s) 899, 984
Hpy99I CGWCG 1 cut(s) 1043
HpyAV CCTTC 6 cut(s) 39, 295, 452, 479, 485, 1160
HpyCH4IV ACGT 2 cut(s) 417, 1041
HpyCH4V TGCA 2 cut(s) 360, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 269, 1167
HpyF3I CTNAG 5 cut(s) 87, 245, 380, 503, 1140
HpySE526I ACGT 2 cut(s) 417, 1041
Hsp92I GRCGYC 1 cut(s) 1041
Hsp92II CATG 5 cut(s) 101, 153, 716, 845, 973
HspAI GCGC 1 cut(s) 777
KspI CCGCGG 1 cut(s) 273
Kzo9I GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 1185
Lsp1109I GCAGC 4 cut(s) 151, 187, 247, 412
LweI GCATC 1 cut(s) 505
MaeI CTAG 5 cut(s) 45, 312, 953, 1023, 1047
MaeII ACGT 2 cut(s) 417, 1041
MaeIII GTNAC 2 cut(s) 413, 1042
MalI GATC 7 cut(s) 102, 183, 306, 424, 706, 822, 990
MboI GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
MflI RGATCY 3 cut(s) 304, 422, 988
MhlI GDGCHC 1 cut(s) 726
MluI ACGCGT 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 400, 507
MseI TTAA 2 cut(s) 393, 1203
MspA1I CMGCKG 3 cut(s) 272, 403, 917
MspI CCGG 5 cut(s) 365, 433, 688, 894, 1184
MspR9I CCNGG 1 cut(s) 1184
Mva1269I GAATGC 1 cut(s) 639
MvnI CGCG 2 cut(s) 175, 272
MwoI GCNNNNNNNGC 3 cut(s) 266, 269, 1167
NciI CCSGG 1 cut(s) 1184
NdeI CATATG 1 cut(s) 871
NdeII GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
NheI GCTAGC 2 cut(s) 44, 1022
NlaIII CATG 5 cut(s) 101, 153, 716, 845, 973
NlaIV GGNNCC 4 cut(s) 306, 892, 990, 1096
NmuCI GTSAC 2 cut(s) 413, 1042
NspI RCATGY 2 cut(s) 716, 973
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 1170
PciI ACATGT 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 1118
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 2 cut(s) 507, 667
PfoI TCCNGGA 1 cut(s) 1182
PinAI ACCGGT 1 cut(s) 893
PkrI GCNGC 6 cut(s) 141, 202, 262, 271, 274, 402
PscI ACATGT 1 cut(s) 712
PspN4I GGNNCC 4 cut(s) 306, 892, 990, 1096
PspPI GGNCC 1 cut(s) 430
PsuI RGATCY 3 cut(s) 304, 422, 988
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 2 cut(s) 554, 711
RsaNI GTAC 2 cut(s) 553, 710
SacII CCGCGG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 393, 1203
SatI GCNGC 6 cut(s) 140, 201, 261, 270, 273, 401
Sau3AI GATC 7 cut(s) 100, 181, 304, 422, 704, 820, 988
Sau96I GGNCC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 1184
SduI GDGCHC 1 cut(s) 726
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 1253
Sfr303I CCGCGG 1 cut(s) 273
SgrBI CCGCGG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 696, 902
SmoI CTYRAG 2 cut(s) 696, 902
SpeI ACTAGT 1 cut(s) 952
SseBI AGGCCT 1 cut(s) 1170
SsiI CCGC 5 cut(s) 13, 270, 272, 813, 917
SspMI CTAG 5 cut(s) 45, 312, 953, 1023, 1047
StuI AGGCCT 1 cut(s) 1170
StyD4I CCNGG 1 cut(s) 1182
StyI CCWWGG 1 cut(s) 1171
TaiI ACGT 2 cut(s) 420, 1044
TaqI TCGA 2 cut(s) 720, 819
TaqII GACCGA 1 cut(s) 1184
TatI WGTACW 2 cut(s) 552, 709
TauI GCSGC 2 cut(s) 272, 275
TfiI GAWTC 2 cut(s) 507, 667
Tru1I TTAA 2 cut(s) 393, 1203
Tru9I TTAA 2 cut(s) 393, 1203
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 413, 1042
TseI GCWGC 4 cut(s) 139, 200, 260, 400
Tsp45I GTSAC 2 cut(s) 413, 1042
TspDTI ATGAA 8 cut(s) 69, 147, 351, 632, 897, 960, 990, 1179
TspGWI ACGGA 1 cut(s) 1001
TspRI CASTG 1 cut(s) 111
XceI RCATGY 2 cut(s) 716, 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XspI CTAG 5 cut(s) 45, 312, 953, 1023, 1047
ZraI GACGTC 1 cut(s) 1042
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.