Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

5686121 .. 5690618

Gene Structure 4498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG067700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAATGTAAGAGATTTTCATGCCATGGAGAATTTCTTTACTCATTCTGTGGTGAACTCTGGTGGACTCAAAGGAGTCTTGGGTTCATGCTTTGTGGTTGAACAAATGAGAAGCAAGAAGCAAGATGCGGCTTCAAACCATGGAATGCTTCAAATCAAGACGGAAATGAAAGCACAGATTTCATTGAGTTCCTCAGTCTATCCCTCTCCAGTCCCAAGTCCTGCTGTCGATGCAAGTGTATCCGGGGCTGCGAGGGAGGAGAGAAGAATGACACGCCAACAAAGAAGATTTATTCTGAGCACAAGAAATGATGCTCATGCCGCAACTGCTTCTTCGAGAATGGGAGGAGAGAGGGATGCAACTGGTGCTGGTTCTGATGCGCAGAACAACGAACAAGACCTCTACTTGTTCGGCACACCGGATAACAGGAAACTGAGATTTTTGTTCAAAAAGGAGATCAAGAAGAGTGATGTTGGATCTTGGGGCAGGATTGTCCTTCCTAAGGTGCTCTTAGTTTGCTGTATTCTTAACTATTTTCTTTTTCTTTCTCTTCTTTTTGTGCGAGGAAACAGTACATTTCCATTCGAAAGGTTCCACCGCGACCAGTACATGATGCCAAGCCCTGCTCGTACCAACAACAAATCTATACCGAAGACAACAGTAGCAAGAGCAGTAGCTGCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

228

Amino Acids

25.38

Weight (kDa)

10.05

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
AccII	CGCG	1 cut(s)	600
AciI	CCGC	3 cut(s)	128, 321, 598
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	3 cut(s)	574, 608, 631
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	101, 135, 152, 448
AluBI	AGCT	1 cut(s)	677
AluI	AGCT	1 cut(s)	677
Alw21I	GWGCWC	2 cut(s)	302, 510
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	677
ApeKI	GCWGC	2 cut(s)	248, 677
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	585
AxyI	CCTNAGG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	2 cut(s)	302, 510
BbvI	GCAGC	2 cut(s)	235, 664
BciVI	GTATCC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	4 cut(s)	129, 249, 321, 678
BlsI	GCNGC	4 cut(s)	130, 250, 322, 679
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	6 cut(s)	115, 220, 301, 346, 367, 603
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	24, 139, 243
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	3 cut(s)	209, 367, 604
Bse21I	CCTNAGG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	24, 139, 243
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	207, 287, 425
BseNI	ACTGG	3 cut(s)	209, 367, 604
BseRI	GAGGAG	2 cut(s)	272, 360
BseXI	GCAGC	2 cut(s)	235, 664
Bsh1236I	CGCG	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	302, 510
BsiSI	CCGG	2 cut(s)	243, 419
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	585
Bsp1286I	GDGCHC	2 cut(s)	302, 510
Bsp143I	GATC	2 cut(s)	456, 476
Bsp19I	CCATGG	2 cut(s)	24, 139
BspACI	CCGC	3 cut(s)	128, 321, 598
BspCNI	CTCAG	3 cut(s)	206, 288, 426
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	209, 367, 604
BssECI	CCNNGG	3 cut(s)	24, 139, 243
BssMI	GATC	2 cut(s)	456, 476
BssT1I	CCWWGG	2 cut(s)	24, 139
Bst4CI	ACNGT	2 cut(s)	572, 661
Bst6I	CTCTTC	2 cut(s)	458, 555
BstAPI	GCANNNNNTGC	2 cut(s)	365, 677
BstBI	TTCGAA	1 cut(s)	585
BstDEI	CTNAG	5 cut(s)	193, 296, 434, 501, 511
BstDSI	CCRYGG	2 cut(s)	24, 139
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	459, 479
BstMBI	GATC	2 cut(s)	456, 476
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 320, 326, 365, 677
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	235, 664
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	250
BtgI	CCRYGG	2 cut(s)	24, 139
BtsCI	GGATG	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	573, 607, 630
CviAII	CATG	6 cut(s)	20, 25, 87, 140, 317, 610
CviJI	RGCY	4 cut(s)	131, 248, 621, 677
CviKI_1	RGCY	4 cut(s)	131, 248, 621, 677
CviQI	GTAC	3 cut(s)	573, 607, 630
DdeI	CTNAG	5 cut(s)	193, 296, 434, 501, 511
DpnI	GATC	2 cut(s)	458, 478
DpnII	GATC	2 cut(s)	456, 476
Eam1104I	CTCTTC	2 cut(s)	458, 555
EarI	CTCTTC	2 cut(s)	458, 555
Eco130I	CCWWGG	2 cut(s)	24, 139
Eco81I	CCTNAGG	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoT14I	CCWWGG	2 cut(s)	24, 139
ErhI	CCWWGG	2 cut(s)	24, 139
FaeI	CATG	6 cut(s)	23, 28, 90, 143, 320, 613
FaiI	YATR	7 cut(s)	21, 26, 88, 141, 318, 611, 647
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	6 cut(s)	19, 24, 86, 139, 316, 609
Fnu4HI	GCNGC	4 cut(s)	129, 249, 321, 678
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	4 cut(s)	129, 249, 321, 678
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	129, 249, 321, 678
GsuI	CTGGAG	1 cut(s)	192
HapII	CCGG	2 cut(s)	243, 419
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	6 cut(s)	23, 28, 90, 143, 320, 613
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	2 cut(s)	66, 75
HpaII	CCGG	2 cut(s)	243, 419
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	55, 65
Hpy188I	TCNGA	2 cut(s)	297, 376
Hpy188III	TCNNGA	3 cut(s)	157, 336, 460
Hpy8I	GTNNAC	2 cut(s)	55, 65
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	572, 661
HpyCH4V	TGCA	2 cut(s)	233, 359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 320, 326, 365, 677
HpyF3I	CTNAG	5 cut(s)	193, 296, 434, 501, 511
Hsp92II	CATG	6 cut(s)	23, 28, 90, 143, 320, 613
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	456, 476
Lsp1109I	GCAGC	2 cut(s)	235, 664
LweI	GCATC	6 cut(s)	115, 220, 301, 346, 367, 603
MalI	GATC	2 cut(s)	458, 478
MboI	GATC	2 cut(s)	456, 476
MboII	GAAGA	6 cut(s)	276, 297, 324, 475, 542, 664
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	302, 510
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	60, 84
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	8 cut(s)	202, 214, 246, 250, 338, 345, 410, 557
MseI	TTAA	1 cut(s)	528
MspI	CCGG	2 cut(s)	243, 419
MspR9I	CCNGG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	150
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	5 cut(s)	230, 320, 326, 365, 677
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	2 cut(s)	24, 139
NdeII	GATC	2 cut(s)	456, 476
NlaIII	CATG	6 cut(s)	23, 28, 90, 143, 320, 613
NlaIV	GGNNCC	1 cut(s)	593
NsbI	TGCGCA	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	585
PctI	GAATGC	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	130, 250, 322, 679
PleI	GAGTC	2 cut(s)	60, 83
PpsI	GAGTC	2 cut(s)	60, 83
PspN4I	GGNNCC	1 cut(s)	593
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	3 cut(s)	574, 608, 631
RsaNI	GTAC	3 cut(s)	573, 607, 630
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	129, 249, 321, 678
Sau3AI	GATC	2 cut(s)	456, 476
SchI	GAGTC	2 cut(s)	60, 84
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	302, 510
SetI	ASST	4 cut(s)	402, 507, 593, 679
SfaNI	GCATC	6 cut(s)	115, 220, 301, 346, 367, 603
SfuI	TTCGAA	1 cut(s)	585
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	128, 321, 598
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	24, 139
TaaI	ACNGT	2 cut(s)	572, 661
TaqI	TCGA	3 cut(s)	228, 335, 585
TasI	AATT	1 cut(s)	31
TatI	WGTACW	2 cut(s)	572, 606
TauI	GCSGC	2 cut(s)	131, 323
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	2 cut(s)	248, 677
TspDTI	ATGAA	5 cut(s)	8, 17, 75, 171, 182
TspGWI	ACGGA	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.