Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

12608811 .. 12609777

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCCTCCTCCCATCTGTCCCTCTCCAGTCCCAAGTTCGACTGCGATGGACTCGAGGATGGTACGCCAAAGAAGAAGCGACATTCTGAGAACAAAAAAAGCTACTTGTGCAGAGCTTGTTGTTCTTCTTCTTCAAGGTTGGCTGTAGAGAGAGATCCATCTACTGCTGGTTCTGAAACTCAGAATGAACAACACCTCTACCCATTCTGCATGCCGGATAACAAGAAAGAGGCTGAAAAATACCTTCCGAGCCTCTTCGATAAAGAAGGCATCAAGTTGAGGATCAGGGATGCCCTTTCAACCCAAGAGTGGGGTTTGAAATACAAGTACTGGACAAATAACAAAAGCCGAATGTATGTGCTCGAAAACATAGGAGACTTTGTTCAGGAAAGTGGAGTGGAGGTGGGAGATAGCATTCATCTTTATGAAGATGAATGCAAGAATCTTGTGAGTTCTACTCTCTTTTGTTTCTTCTTTGGATACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

6.43

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	88 - 150	9.9e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	149, 290
AfaI	GTAC	2 cut(s)	64, 329
AfiI	CCNNNNNNNGG	2 cut(s)	309, 310
AgsI	TTSAA	3 cut(s)	135, 300, 319
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	2 cut(s)	102, 116
AluI	AGCT	2 cut(s)	102, 116
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	149, 290
Ama87I	CYCGRG	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	4 cut(s)	21, 41, 53, 166
BciVI	GTATCC	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	473
BmcAI	AGTACT	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	279, 280
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BpmI	CTGGAG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 387, 396, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 310
Bse1I	ACTGG	2 cut(s)	27, 335
BseGI	GGATG	2 cut(s)	64, 295
BseLI	CCNNNNNNNGG	2 cut(s)	309, 310
BseMII	CTCAG	2 cut(s)	78, 194
BseNI	ACTGG	2 cut(s)	27, 335
BsgI	GTGCAG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	4, 15
BslI	CCNNNNNNNGG	2 cut(s)	309, 310
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	4, 15
BsmI	GAATGC	2 cut(s)	414, 440
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	154, 282
BspCNI	CTCAG	2 cut(s)	79, 193
BspPI	GGATC	2 cut(s)	149, 290
BsrI	ACTGG	2 cut(s)	27, 335
BssMI	GATC	2 cut(s)	154, 282
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	87, 180
BstF5I	GGATG	2 cut(s)	64, 295
BstKTI	GATC	2 cut(s)	157, 285
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	154, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	64, 295
Cac8I	GCNNGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	63, 328
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	6 cut(s)	102, 116, 143, 233, 252, 348
CviKI_1	RGCY	6 cut(s)	102, 116, 143, 233, 252, 348
CviQI	GTAC	2 cut(s)	63, 328
DdeI	CTNAG	2 cut(s)	87, 180
DpnI	GATC	2 cut(s)	156, 284
DpnII	GATC	2 cut(s)	154, 282
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	53
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	212, 357, 371, 426
FaqI	GGGAC	2 cut(s)	4, 15
FatI	CATG	1 cut(s)	210
FokI	GGATG	2 cut(s)	71, 302
GsuI	CTGGAG	1 cut(s)	10
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	2 cut(s)	51, 442
HpaII	CCGG	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	88, 175, 183, 249
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	254, 260
HpyCH4V	TGCA	3 cut(s)	111, 210, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	87, 180
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	154, 282
LpnPI	CCDG	6 cut(s)	40, 153, 228, 271, 316, 371
LweI	GCATC	2 cut(s)	279, 280
MalI	GATC	2 cut(s)	156, 284
MboI	GATC	2 cut(s)	154, 282
MboII	GAAGA	7 cut(s)	85, 117, 120, 123, 247, 440, 463
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	9 cut(s)	16, 19, 32, 49, 206, 223, 263, 273, 394
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	1 cut(s)	215
Mva1269I	GAATGC	2 cut(s)	414, 440
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	154, 282
NlaIII	CATG	1 cut(s)	214
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	53
PctI	GAATGC	2 cut(s)	414, 440
PfeI	GAWTC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	64, 329
RsaNI	GTAC	2 cut(s)	63, 328
RseI	CAYNNNNRTG	1 cut(s)	423
Sau3AI	GATC	2 cut(s)	154, 282
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	6 cut(s)	104, 118, 140, 198, 246, 405
SfaNI	GCATC	2 cut(s)	279, 280
SfcI	CTRYAG	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	214
TaqI	TCGA	4 cut(s)	39, 54, 258, 363
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	201, 407, 441, 447
XceI	RCATGY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.