Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

11546160 .. 11548016

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAGAGAGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTTGGAGCGACTGGATACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTACGTTTTGCAGAGGCCAGAGATTGGTCTCGAAATCGAGAAAGTCCAACTCTTTCTTTCTTTCAAGAAACTCGGCGCACGTATCGTTGAAGGTTCTTTCTCCGACCATCAAAGCCTCGTATCCGCCGTGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGTGTTCACTTCCGTAGCCATAACATTCTAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGCGGTTTTTACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCGCTACCGCCCGGAAGAGAAACCTTTGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCTTACACTTACGTTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTGTCTCAGATGGTAACTTTACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAAACGATCCACGGACATTAAACAAAACCGTGAATATTAGACCTCCCGACAACGTTCTCACGCAGTTGGAATTAGTTCAGATCTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCACAAGACTTCCTCGCCAACATTGAACAAATGGAGATTCCACACCAAGCAGGGATAGGACATTTCTATCACATTTTCTATGAAGGATGTCTCACTGATCACGAAGTCGGAGAAGACGAAGAAGCTTCTAGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010283 GO:0016491 GO:0016627 GO:0016628 GO:0019438 GO:0019748 GO:0030054 GO:0044237 GO:0044249 GO:0044550 GO:0055044 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

317

Amino Acids

35.55

Weight (kDa)

5.9

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	9 - 313	1.2e-68	NmrA-like family
Epimerase	PF01370	12 - 225	1.1e-09	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	16 - 161	2.9e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AatII	GACGTC	2 cut(s)	252, 912
AccB7I	CCANNNNNTGG	2 cut(s)	131, 433
AccII	CGCG	3 cut(s)	31, 33, 629
AciI	CCGC	7 cut(s)	231, 261, 349, 404, 501, 599, 627
AclI	AACGTT	2 cut(s)	635, 690
AclWI	GGATC	3 cut(s)	371, 384, 638
AcsI	RAATTY	2 cut(s)	365, 465
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	2 cut(s)	249, 909
AfaI	GTAC	1 cut(s)	917
AfiI	CCNNNNNNNGG	3 cut(s)	131, 389, 433
AflII	CTTAAG	1 cut(s)	937
AgsI	TTSAA	3 cut(s)	172, 197, 791
AluBI	AGCT	5 cut(s)	307, 313, 323, 730, 890
AluI	AGCT	5 cut(s)	307, 313, 323, 730, 890
Alw26I	GTCTC	5 cut(s)	98, 140, 262, 528, 860
AlwI	GGATC	3 cut(s)	371, 384, 638
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	458, 764
ApoI	RAATTY	2 cut(s)	365, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	3 cut(s)	33, 185, 400
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	376
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	445, 751
BccI	CCATC	4 cut(s)	222, 367, 523, 569
BceAI	ACGGC	1 cut(s)	218
BciVI	GTATCC	2 cut(s)	50, 238
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	5 cut(s)	98, 140, 262, 528, 860
BfaI	CTAG	2 cut(s)	299, 894
BfrI	CTTAAG	1 cut(s)	937
BfuI	GTATCC	2 cut(s)	50, 238
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	3 cut(s)	459, 501, 765
BlsI	GCNGC	3 cut(s)	460, 502, 766
Bme1390I	CCNGG	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	408
BsaAI	YACGTR	2 cut(s)	188, 386
BsaHI	GRCGYC	2 cut(s)	249, 909
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	647
BsaWI	WCCGGW	2 cut(s)	269, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 389, 433
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	3 cut(s)	607, 857, 934
BseLI	CCNNNNNNNGG	3 cut(s)	131, 389, 433
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	445, 751
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	3 cut(s)	31, 33, 629
BshFI	GGCC	1 cut(s)	124
BsiSI	CCGG	5 cut(s)	270, 408, 462, 513, 735
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	131, 389, 433
BsmAI	GTCTC	5 cut(s)	98, 140, 262, 528, 860
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	376, 643, 717, 862
BspACI	CCGC	7 cut(s)	231, 261, 349, 404, 501, 599, 627
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	3 cut(s)	31, 33, 629
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	3 cut(s)	371, 384, 638
BspTI	CTTAAG	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	4 cut(s)	376, 643, 717, 862
BssNI	GRCGYC	2 cut(s)	249, 909
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	2 cut(s)	62, 406
BstACI	GRCGYC	2 cut(s)	249, 909
BstAFI	CTTAAG	1 cut(s)	937
BstBAI	YACGTR	2 cut(s)	188, 386
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	607, 857, 934
BstFNI	CGCG	3 cut(s)	31, 33, 629
BstHHI	GCGC	3 cut(s)	33, 185, 400
BstKTI	GATC	4 cut(s)	379, 646, 720, 865
BstMAI	GTCTC	5 cut(s)	98, 140, 262, 528, 860
BstMBI	GATC	4 cut(s)	376, 643, 717, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 455, 497, 509
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	406
BstUI	CGCG	3 cut(s)	31, 33, 629
BstV1I	GCAGC	2 cut(s)	445, 751
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	2 cut(s)	376, 717
BstYI	RGATCY	2 cut(s)	376, 717
BsuI	GTATCC	2 cut(s)	50, 238
BsuRI	GGCC	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	3 cut(s)	607, 857, 934
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	3 cut(s)	33, 185, 400
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	916
CviAII	CATG	3 cut(s)	265, 395, 925
CviQI	GTAC	1 cut(s)	916
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	378, 645, 719, 864
DpnII	GATC	4 cut(s)	376, 643, 717, 862
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	62, 406
EarI	CTCTTC	2 cut(s)	62, 406
EciI	GGCGGA	2 cut(s)	220, 250
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	613
FaeI	CATG	3 cut(s)	268, 398, 928
FaiI	YATR	9 cut(s)	62, 266, 291, 374, 389, 396, 570, 846, 926
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	3 cut(s)	264, 394, 924
FbaI	TGATCA	1 cut(s)	862
Fnu4HI	GCNGC	3 cut(s)	459, 501, 765
FokI	GGATG	3 cut(s)	614, 864, 941
Fsp4HI	GCNGC	3 cut(s)	459, 501, 765
FspBI	CTAG	2 cut(s)	299, 894
GlaI	GCGC	3 cut(s)	32, 184, 399
GluI	GCNGC	3 cut(s)	459, 501, 765
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	5 cut(s)	270, 408, 462, 513, 735
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	33, 185, 400
Hin1I	GRCGYC	2 cut(s)	249, 909
Hin1II	CATG	3 cut(s)	268, 398, 928
Hin6I	GCGC	3 cut(s)	31, 183, 398
HinP1I	GCGC	3 cut(s)	31, 183, 398
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	888
HinfI	GANTC	1 cut(s)	802
HpaII	CCGG	5 cut(s)	270, 408, 462, 513, 735
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	247, 277
Hpy188I	TCNGA	7 cut(s)	211, 364, 528, 549, 717, 875, 953
Hpy188III	TCNNGA	7 cut(s)	101, 137, 145, 172, 683, 866, 905
Hpy8I	GTNNAC	2 cut(s)	247, 277
Hpy99I	CGWCG	2 cut(s)	254, 320
HpyAV	CCTTC	3 cut(s)	89, 191, 842
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	9 cut(s)	111, 187, 249, 342, 385, 480, 635, 690, 909
HpyCH4V	TGCA	2 cut(s)	118, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 455, 497, 509
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	9 cut(s)	111, 187, 249, 342, 385, 480, 635, 690, 909
Hsp92I	GRCGYC	2 cut(s)	249, 909
Hsp92II	CATG	3 cut(s)	268, 398, 928
HspAI	GCGC	3 cut(s)	31, 183, 398
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	4 cut(s)	376, 643, 717, 862
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	2 cut(s)	445, 751
MaeI	CTAG	2 cut(s)	299, 894
MaeII	ACGT	9 cut(s)	111, 187, 249, 342, 385, 480, 635, 690, 909
MaeIII	GTNAC	3 cut(s)	98, 338, 532
MalI	GATC	4 cut(s)	378, 645, 719, 864
MboI	GATC	4 cut(s)	376, 643, 717, 862
MboII	GAAGA	5 cut(s)	79, 423, 617, 890, 896
MflI	RGATCY	2 cut(s)	376, 717
MluCI	AATT	4 cut(s)	365, 465, 707, 743
MmeI	TCCRAC	5 cut(s)	25, 178, 234, 684, 853
MnlI	CCTC	8 cut(s)	63, 114, 233, 325, 448, 555, 690, 788
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	4 cut(s)	561, 638, 656, 938
MspCI	CTTAAG	1 cut(s)	937
MspI	CCGG	5 cut(s)	270, 408, 462, 513, 735
MspR9I	CCNGG	1 cut(s)	408
MvnI	CGCG	3 cut(s)	31, 33, 629
MwoI	GCNNNNNNNGC	4 cut(s)	89, 455, 497, 509
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	376, 643, 717, 862
NlaIII	CATG	3 cut(s)	268, 398, 928
NlaIV	GGNNCC	1 cut(s)	378
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	3 cut(s)	108, 231, 879
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	802
PflMI	CCANNNNNTGG	2 cut(s)	131, 433
PkrI	GCNGC	3 cut(s)	460, 502, 766
Ppu21I	YACGTR	2 cut(s)	188, 386
Psp1406I	AACGTT	2 cut(s)	635, 690
PspN4I	GGNNCC	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	376, 717
RsaI	GTAC	1 cut(s)	917
RsaNI	GTAC	1 cut(s)	916
SaqAI	TTAA	4 cut(s)	561, 638, 656, 938
SatI	GCNGC	3 cut(s)	459, 501, 765
Sau3AI	GATC	4 cut(s)	376, 643, 717, 862
ScrFI	CCNGG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	308, 937
SmoI	CTYRAG	2 cut(s)	308, 937
Sse9I	AATT	4 cut(s)	365, 465, 707, 743
SsiI	CCGC	7 cut(s)	231, 261, 349, 404, 501, 599, 627
SspI	AATATT	3 cut(s)	565, 673, 760
SspMI	CTAG	2 cut(s)	299, 894
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	9 cut(s)	114, 190, 252, 345, 388, 483, 638, 693, 912
TaqI	TCGA	3 cut(s)	138, 144, 318
TasI	AATT	4 cut(s)	365, 465, 707, 743
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	4 cut(s)	561, 638, 656, 938
Tru9I	TTAA	4 cut(s)	561, 638, 656, 938
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	458, 764
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	618, 861
TspGWI	ACGGA	2 cut(s)	272, 664
TspRI	CASTG	1 cut(s)	865
Van91I	CCANNNNNTGG	2 cut(s)	131, 433
Vha464I	CTTAAG	1 cut(s)	937
XapI	RAATTY	2 cut(s)	365, 465
XceI	RCATGY	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	299, 894
ZraI	GACGTC	2 cut(s)	250, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.