Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Forward (+)

2631479 .. 2634808

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G023400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAAAAGAGCAAGGTGCTTGTGGTTGGTGGTACTGGGTACCTGGGGCGTAGGATTGTTTCTGCAAGCCTATCCCAAGGCCACCCAACGTATGTTCTTCAAAGGCCAGAGATTGGCCTTGACATTGATAAGCTCCAAATGCTCTTGGCGTTCAAGAAGCAAGGGGCTCACCTTGTGGAGGGCTCATTTTCTGATCTGGAAAGCCTTGTCCGTGCTATCAAGCTTGTTGATGTTGTCATCTGCCCCATATCTGGGGTACATATTCGGAGTCACAACATTTTGCTGCAGCTCCAGCTTGTTGAAGCTATCAAAAGAGCCGGAAATATTAAGCGTTTTTTGCCATCAGAGTTCGGTTTTGATCCAGCACGTATGGGACATGCACTTGAACCTGGAAGAGTTTCATTTGATGATAAAATGGTAGTGAGAAAGGCAATACAAGATGCTAAAATCCCCTTCACTTATGTATGTGGTGCCGGCTTCGCTGCTTATTTCGCCGGCAACCTTTCACAGATGGGGGCACTCGTTCCTCCAAAGGAGAAAGTTCTTATTTATGGAGATGGTAACGCTAAAGTATCTATAATGGATGAAGATGACATCGCAGCATATACAATCAAAACAATAGATGATCCGCGAACATTGAACAAAACATTATACCTTCGTCCACCCGAAAACGAACTCAGTCAAAAACAGTTGGTTGAGATGTGGGAAAACCTCATAGGCAAGAAACTAGAACATATCTCCATTTCAGCAGAAGACTTCCTTGCCTCTATGAAAGGTATGGACTATGCAAGCCAGGTAGGAGTGGGGCATTTCTACCACATGTTCTACGAAGGCGCTCTGACAAACTTTGAAACCGGGGAAGAAGGAGAAGAAGCTTCAAAGCTTTACCCAGAAGTGAAATACACCCGCATGAATGAATACTTAAAAATTTATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

313

Amino Acids

34.77

Weight (kDa)

6.27

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	39, 470
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccII	CGCG	1 cut(s)	631
AciI	CCGC	2 cut(s)	629, 907
AclWI	GGATC	2 cut(s)	353, 620
AcsI	RAATTY	1 cut(s)	927
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	3 cut(s)	34, 41, 258
AfiI	CCNNNNNNNGG	4 cut(s)	113, 178, 251, 252
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	7 cut(s)	101, 154, 302, 386, 640, 851, 879
AjnI	CCWGG	3 cut(s)	42, 388, 792
AluBI	AGCT	7 cut(s)	133, 223, 289, 295, 305, 875, 883
AluI	AGCT	7 cut(s)	133, 223, 289, 295, 305, 875, 883
AlwI	GGATC	2 cut(s)	353, 620
AoxI	GGCC	3 cut(s)	79, 104, 115
ApeKI	GCWGC	4 cut(s)	283, 286, 482, 599
ApoI	RAATTY	1 cut(s)	927
Asp700I	GAANNNNTTC	1 cut(s)	397
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	836
AsuC2I	CCSGG	1 cut(s)	856
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	2 cut(s)	39, 470
BanII	GRGCYC	2 cut(s)	169, 185
BbsI	GAAGAC	1 cut(s)	759
BbvI	GCAGC	4 cut(s)	270, 298, 469, 611
BccI	CCATC	3 cut(s)	349, 505, 551
BciT130I	CCWGG	3 cut(s)	44, 390, 794
BcnI	CCSGG	1 cut(s)	856
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	837
BisI	GCNGC	4 cut(s)	284, 287, 483, 600
BlsI	GCNGC	4 cut(s)	285, 288, 484, 601
Bme1390I	CCNGG	4 cut(s)	44, 390, 794, 856
BmiI	GGNNCC	2 cut(s)	41, 472
BmrFI	CCNGG	4 cut(s)	44, 390, 794, 856
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	856
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	43, 76, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 178, 251, 252
Bse118I	RCCGGY	2 cut(s)	473, 494
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	3 cut(s)	44, 390, 794
BseDI	CCNNGG	3 cut(s)	43, 76, 855
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	4 cut(s)	113, 178, 251, 252
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	4 cut(s)	270, 298, 469, 611
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	3 cut(s)	81, 106, 117
BshNI	GGYRCC	2 cut(s)	39, 470
BsiSI	CCGG	4 cut(s)	318, 474, 495, 855
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	4 cut(s)	113, 178, 251, 252
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	81, 106, 117
Bsp1286I	GDGCHC	3 cut(s)	169, 185, 520
Bsp143I	GATC	3 cut(s)	193, 358, 625
BspACI	CCGC	2 cut(s)	629, 907
BspANI	GGCC	3 cut(s)	81, 106, 117
BspCNI	CTCAG	1 cut(s)	690
BspFNI	CGCG	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	41, 472
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	2 cut(s)	353, 620
BspT107I	GGYRCC	2 cut(s)	39, 470
BsrFI	RCCGGY	2 cut(s)	473, 494
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	2 cut(s)	473, 494
BssECI	CCNNGG	3 cut(s)	43, 76, 855
BssMI	GATC	3 cut(s)	193, 358, 625
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	3 cut(s)	44, 390, 794
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	1 cut(s)	388
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	67, 475, 496, 790
BstDEI	CTNAG	1 cut(s)	677
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	3 cut(s)	196, 361, 628
BstMBI	GATC	3 cut(s)	193, 358, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 292, 337, 479, 491
BstNI	CCWGG	3 cut(s)	44, 390, 794
BstNSI	RCATGY	2 cut(s)	380, 823
BstSCI	CCNGG	4 cut(s)	42, 388, 792, 854
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	4 cut(s)	270, 298, 469, 611
BstV2I	GAAGAC	1 cut(s)	759
BsuRI	GGCC	3 cut(s)	81, 106, 117
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	589
Cac8I	GCNNGC	4 cut(s)	67, 475, 496, 790
CfoI	GCGC	1 cut(s)	836
Cfr10I	RCCGGY	2 cut(s)	473, 494
Csp6I	GTAC	3 cut(s)	33, 40, 257
CviAII	CATG	4 cut(s)	377, 820, 910, 936
CviQI	GTAC	3 cut(s)	33, 40, 257
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	3 cut(s)	195, 360, 627
DpnII	GATC	3 cut(s)	193, 358, 625
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	169, 185
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	42, 388, 792
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	937
EcoT38I	GRGCYC	2 cut(s)	169, 185
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	4 cut(s)	380, 823, 913, 939
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	4 cut(s)	376, 819, 909, 935
FauI	CCCGC	1 cut(s)	914
Fnu4HI	GCNGC	4 cut(s)	284, 287, 483, 600
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	169, 185
Fsp4HI	GCNGC	4 cut(s)	284, 287, 483, 600
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	4 cut(s)	284, 287, 483, 600
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	3 cut(s)	81, 106, 117
HapII	CCGG	4 cut(s)	318, 474, 495, 855
HhaI	GCGC	1 cut(s)	836
Hin1II	CATG	4 cut(s)	380, 823, 913, 939
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HindIII	AAGCTT	3 cut(s)	221, 873, 881
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	4 cut(s)	318, 474, 495, 855
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	4 cut(s)	193, 267, 346, 840
Hpy188III	TCNNGA	2 cut(s)	154, 197
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	4 cut(s)	463, 665, 824, 857
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4IV	ACGT	2 cut(s)	89, 367
HpyCH4V	TGCA	5 cut(s)	65, 286, 380, 788, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 292, 337, 479, 491
HpyF3I	CTNAG	1 cut(s)	677
HpySE526I	ACGT	2 cut(s)	89, 367
Hsp92II	CATG	4 cut(s)	380, 823, 913, 939
HspAI	GCGC	1 cut(s)	834
KpnI	GGTACC	1 cut(s)	43
KroI	GCCGGC	2 cut(s)	473, 494
KroNI	GCCGGC	2 cut(s)	475, 496
Kzo9I	GATC	3 cut(s)	193, 358, 625
LmnI	GCTCC	2 cut(s)	138, 294
Lsp1109I	GCAGC	4 cut(s)	270, 298, 469, 611
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	2 cut(s)	89, 367
MaeIII	GTNAC	2 cut(s)	269, 560
MalI	GATC	3 cut(s)	195, 360, 627
MboI	GATC	3 cut(s)	193, 358, 625
MboII	GAAGA	6 cut(s)	89, 405, 599, 764, 872, 881
MhlI	GDGCHC	3 cut(s)	169, 185, 520
MluCI	AATT	1 cut(s)	927
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	172, 537, 722, 775
Mph1103I	ATGCAT	1 cut(s)	937
MroNI	GCCGGC	2 cut(s)	473, 494
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	327, 923
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	4 cut(s)	318, 474, 495, 855
MspR9I	CCNGG	4 cut(s)	44, 390, 794, 856
MvaI	CCWGG	3 cut(s)	44, 390, 794
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	5 cut(s)	139, 292, 337, 479, 491
NaeI	GCCGGC	2 cut(s)	475, 496
NciI	CCSGG	1 cut(s)	856
NdeII	GATC	3 cut(s)	193, 358, 625
NgoMIV	GCCGGC	2 cut(s)	473, 494
NlaIII	CATG	4 cut(s)	380, 823, 913, 939
NlaIV	GGNNCC	2 cut(s)	41, 472
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	937
NspI	RCATGY	2 cut(s)	380, 823
PciI	ACATGT	1 cut(s)	819
PdiI	GCCGGC	2 cut(s)	475, 496
PdmI	GAANNNNTTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	285, 288, 484, 601
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	368
PscI	ACATGT	1 cut(s)	819
Psp6I	CCWGG	3 cut(s)	42, 388, 792
PspGI	CCWGG	3 cut(s)	42, 388, 792
PspN4I	GGNNCC	2 cut(s)	41, 472
PstI	CTGCAG	1 cut(s)	288
RsaI	GTAC	3 cut(s)	34, 41, 258
RsaNI	GTAC	3 cut(s)	33, 40, 257
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	2 cut(s)	327, 923
SatI	GCNGC	4 cut(s)	284, 287, 483, 600
Sau3AI	GATC	3 cut(s)	193, 358, 625
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	4 cut(s)	44, 390, 794, 856
SduI	GDGCHC	3 cut(s)	169, 185, 520
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	908
Sse9I	AATT	1 cut(s)	927
SsiI	CCGC	2 cut(s)	629, 907
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	4 cut(s)	42, 388, 792, 854
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	690
TaiI	ACGT	2 cut(s)	92, 370
TasI	AATT	1 cut(s)	927
Tru1I	TTAA	2 cut(s)	327, 923
Tru9I	TTAA	2 cut(s)	327, 923
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	4 cut(s)	283, 286, 482, 599
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	390, 600, 785, 926, 930
TspGWI	ACGGA	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	927
XceI	RCATGY	2 cut(s)	380, 823
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.