Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

30189303 .. 30190475

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTCTGCAAAGGCCGGCGCCAGAGATCGGCCTCGACATTGAGAAGCTACAAATGCTCCTCGTTTAAGAAGCAAGGGGCTCACCTCGTCGAGGGTTCGTTTTCGGATTTCCAGAGCCTCGTCGACGCTGTCAAGCTAGTTGATGTTGTCATATGCACCATGTCGGGGACACATATCCGGAGTCACAACATTATATTGCAGCTCAAGCTTGTTGAAGCCATTAAAGAAGCTGGAAATGTTAAGCGTTTCTTGCCATCAGAGTTTGTCATGGACGTGGCACGTATGGGACATGCTCTTGAACCAGGAAGAGTTCCGTTTGATGACAAAATGAAAGTGAGAAAAGCAATAGAAGATGCTAACATCCCCTTCACATATGTATGTGGTATTGGCTTCGCGGCTTATCATGCCGGCAACCTCTGCCAAATGGGAACACGTACTGGTTCCTCCAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

151

Amino Acids

16.65

Weight (kDa)

9.57

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	18 - 142	1.5e-28	NmrA-like family
NAD_binding_10	PF13460	19 - 127	1e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	3 cut(s)	28, 91, 165
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	215, 299
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	5 cut(s)	48, 136, 202, 208, 230
AluI	AGCT	5 cut(s)	48, 136, 202, 208, 230
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	2 cut(s)	13, 30
ApeKI	GCWGC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	2 cut(s)	200, 396
BlsI	GCNGC	2 cut(s)	201, 397
Bme1390I	CCNGG	1 cut(s)	303
BmgBI	CACGTC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	20, 442
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	188
BsaAI	YACGTR	2 cut(s)	281, 434
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 91, 165
Bse118I	RCCGGY	2 cut(s)	15, 407
Bse1I	ACTGG	1 cut(s)	442
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	3 cut(s)	28, 91, 165
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	15, 32
BshNI	GGYRCC	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	16, 178, 408
BslFI	GGGAC	2 cut(s)	181, 300
BslI	CCNNNNNNNGG	3 cut(s)	28, 91, 165
BsmFI	GGGAC	2 cut(s)	181, 300
BsnI	GGCC	2 cut(s)	15, 32
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	2 cut(s)	15, 32
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	20, 442
BspT107I	GGYRCC	1 cut(s)	18
BsrFI	RCCGGY	2 cut(s)	15, 407
BsrI	ACTGG	1 cut(s)	442
BssAI	RCCGGY	2 cut(s)	15, 407
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	26
BssNI	GRCGYC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstBAI	YACGTR	2 cut(s)	281, 434
BstC8I	GCNNGC	2 cut(s)	17, 409
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 205, 250, 404, 417
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	15, 32
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	17, 409
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	2 cut(s)	15, 407
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	4 cut(s)	160, 268, 290, 404
CviQI	GTAC	1 cut(s)	435
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	82
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	4 cut(s)	163, 271, 293, 407
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	2 cut(s)	181, 300
FatI	CATG	4 cut(s)	159, 267, 289, 403
FauNDI	CATATG	2 cut(s)	152, 373
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	200, 396
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	200, 396
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	200, 396
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	15, 32
HapII	CCGG	3 cut(s)	16, 178, 408
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	4 cut(s)	163, 271, 293, 407
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	3 cut(s)	16, 178, 408
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	106, 259
Hpy188III	TCNNGA	3 cut(s)	112, 178, 296
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	3 cut(s)	92, 125, 128
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	3 cut(s)	273, 280, 433
HpyCH4V	TGCA	3 cut(s)	9, 156, 199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 205, 250, 404, 417
HpySE526I	ACGT	3 cut(s)	273, 280, 433
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	163, 271, 293, 407
HspAI	GCGC	1 cut(s)	19
KasI	GGCGCC	1 cut(s)	18
Kpn2I	TCCGGA	1 cut(s)	177
KroI	GCCGGC	2 cut(s)	15, 407
KroNI	GCCGGC	2 cut(s)	17, 409
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	9 cut(s)	29, 35, 125, 191, 216, 288, 315, 421, 423
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	3 cut(s)	273, 280, 433
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	318, 362
MhlI	GDGCHC	1 cut(s)	82
Mly113I	GGCGCC	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	43, 70, 85, 95, 128, 425, 454
MroI	TCCGGA	1 cut(s)	177
MroNI	GCCGGC	2 cut(s)	15, 407
MseI	TTAA	3 cut(s)	66, 222, 240
MslI	CAYNNNNRTG	2 cut(s)	272, 376
MspI	CCGG	3 cut(s)	16, 178, 408
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	54, 205, 250, 404, 417
NaeI	GCCGGC	2 cut(s)	17, 409
NarI	GGCGCC	1 cut(s)	19
NdeI	CATATG	2 cut(s)	152, 373
NdeII	GATC	1 cut(s)	26
NgoMIV	GCCGGC	2 cut(s)	15, 407
NlaIII	CATG	4 cut(s)	163, 271, 293, 407
NlaIV	GGNNCC	2 cut(s)	20, 442
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	293
PdiI	GCCGGC	2 cut(s)	17, 409
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	201, 397
PleI	GAGTC	1 cut(s)	189
PluTI	GGCGCC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	189
Ppu21I	YACGTR	2 cut(s)	281, 434
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	20, 442
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
RseI	CAYNNNNRTG	2 cut(s)	272, 376
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	66, 222, 240
SatI	GCNGC	2 cut(s)	200, 396
Sau3AI	GATC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	343
SfoI	GGCGCC	1 cut(s)	20
SgrDI	CGTCGACG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	272, 376
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	1 cut(s)	395
SspDI	GGCGCC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	447
TaiI	ACGT	3 cut(s)	276, 283, 436
TaqI	TCGA	3 cut(s)	35, 90, 123
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	66, 222, 240
Tru9I	TTAA	3 cut(s)	66, 222, 240
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.