Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Forward (+)

2547358 .. 2549133

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGAAAGAGCAAGGTGCTTGTGGTAGGTGGAACTGGGTACATGGGAAGAAGGATTGTAAAGGCAAGCCTAGCCCAAGGCCACCCAACCTATGTCCTTCAAAGGCCAGAGATTGGCCTTGACATTGATAAGTTGCAAATGCTCTTGGCATTCAAGAAGCAAGGGGCTTATCTTGTGGAGGGCTCATTTTCTGATTTTCAAAGCCTTGTTGATGCTGTCAAGCTTGTGGATGTTGTCATTTGCACAATGTCTGGGGTTCATTTTCGTAGTCACAACATTTTGTTGCAGCTCAAGCTTGTCAAAGCTATCAAAGAAGCCGGAAATATTAAGCGTTTCTTCCCATCAGAGTTTGGTCTAGATCCAGCACGTATGGGACATGCACTTGAACCTGGGAGAGTTACATTTGATGAGAAAATGGTGGTGAGAAAGGCAATACAAGATGCTAAAATCCCCTTCACTTATGTCTGTGGTGCCGGCTTTGCAGGTTATTTCGCCGGCAACCTTTCACAGATGGGAACACTCCTTCCTCCAAGGGAAAAAGTCCTTATTTATGGAGATGGCAACTCTAAAGTGACTATTGTGGATGAAGATGACCTTGCAACATATACGATCAAAACAATAGATGATCCACGAACATTGAACAAAACATTGTACTTTCGTCCACCCGAAAACGTACTCACTCAAAAACAACTGGTCGATATGTGGGAAAACCTTATAGGCAAGAAACTAGAACATATCACCATTTCGCAACAAGACTTCCTTGCCTCTATGAAAGGTATGGACTATGCTGGACAGGTAGGAGTGGGGCATTTCTACCATATTTTCTATGAAGGCGCTCTGACAAACTTCGAAATAGGAAATGAAGGAGAAGAAGCTTCAAAGCTTTACCCAGAAGTGAAATACACCCGCATGAATGAATACTTAAAAATTTATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

313

Amino Acids

34.91

Weight (kDa)

8.29

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	113
AciI	CCGC	1 cut(s)	907
AclWI	GGATC	2 cut(s)	353, 620
AcsI	RAATTY	1 cut(s)	927
AfaI	GTAC	3 cut(s)	41, 653, 675
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	6 cut(s)	101, 154, 200, 386, 640, 879
AjnI	CCWGG	1 cut(s)	388
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	6 cut(s)	223, 289, 295, 305, 875, 883
AluI	AGCT	6 cut(s)	223, 289, 295, 305, 875, 883
AlwI	GGATC	2 cut(s)	353, 620
AoxI	GGCC	3 cut(s)	79, 104, 115
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	836
AsuHPI	GGTGA	2 cut(s)	433, 730
AsuII	TTCGAA	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	349, 505, 551
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	3 cut(s)	71, 356, 728
BfoI	RGCGCY	1 cut(s)	837
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	202, 430
BmuI	ACTGGG	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	76, 389, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	2 cut(s)	473, 494
Bse1I	ACTGG	2 cut(s)	40, 696
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	76, 389, 530
BseGI	GGATG	2 cut(s)	235, 589
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	40, 696
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	3 cut(s)	81, 106, 117
BshNI	GGYRCC	1 cut(s)	470
BsiSI	CCGG	3 cut(s)	318, 474, 495
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	81, 106, 117
Bsp119I	TTCGAA	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	358, 609, 625
BspACI	CCGC	1 cut(s)	907
BspANI	GGCC	3 cut(s)	81, 106, 117
BspLI	GGNNCC	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	353, 620
BspT104I	TTCGAA	1 cut(s)	849
BspT107I	GGYRCC	1 cut(s)	470
BsrFI	RCCGGY	2 cut(s)	473, 494
BsrI	ACTGG	2 cut(s)	40, 696
BssAI	RCCGGY	2 cut(s)	473, 494
BssECI	CCNNGG	3 cut(s)	76, 389, 530
BssMI	GATC	3 cut(s)	358, 609, 625
BssT1I	CCWWGG	2 cut(s)	76, 530
Bst2UI	CCWGG	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	849
BstC8I	GCNNGC	3 cut(s)	67, 475, 496
BstF5I	GGATG	2 cut(s)	235, 589
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	3 cut(s)	361, 612, 628
BstMBI	GATC	3 cut(s)	358, 609, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 292, 479
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	81, 106, 117
BtsCI	GGATG	2 cut(s)	235, 589
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	67, 475, 496
CfoI	GCGC	1 cut(s)	836
Cfr10I	RCCGGY	2 cut(s)	473, 494
Csp6I	GTAC	3 cut(s)	40, 652, 674
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	43, 377, 910, 936
CviQI	GTAC	3 cut(s)	40, 652, 674
DpnI	GATC	3 cut(s)	360, 611, 627
DpnII	GATC	3 cut(s)	358, 609, 625
Eco130I	CCWWGG	2 cut(s)	76, 530
Eco24I	GRGCYC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	76, 530
EcoT22I	ATGCAT	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	2 cut(s)	76, 530
FaeI	CATG	4 cut(s)	46, 380, 913, 939
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 579, 611, 744, 776
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	4 cut(s)	42, 376, 909, 935
FauI	CCCGC	1 cut(s)	914
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	2 cut(s)	242, 596
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	3 cut(s)	71, 356, 728
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	3 cut(s)	81, 106, 117
HapII	CCGG	3 cut(s)	318, 474, 495
HhaI	GCGC	1 cut(s)	836
Hin1II	CATG	4 cut(s)	46, 380, 913, 939
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HindIII	AAGCTT	4 cut(s)	221, 293, 873, 881
HpaII	CCGG	3 cut(s)	318, 474, 495
HphI	GGTGA	2 cut(s)	433, 730
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	3 cut(s)	193, 346, 840
Hpy188III	TCNNGA	2 cut(s)	154, 356
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	6 cut(s)	45, 107, 463, 533, 824, 857
HpyCH4IV	ACGT	2 cut(s)	367, 672
HpyCH4V	TGCA	7 cut(s)	136, 243, 286, 380, 482, 599, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 292, 479
HpySE526I	ACGT	2 cut(s)	367, 672
Hsp92II	CATG	4 cut(s)	46, 380, 913, 939
HspAI	GCGC	1 cut(s)	834
KroI	GCCGGC	2 cut(s)	473, 494
KroNI	GCCGGC	2 cut(s)	475, 496
Kzo9I	GATC	3 cut(s)	358, 609, 625
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	202, 430
MaeI	CTAG	3 cut(s)	71, 356, 728
MaeII	ACGT	2 cut(s)	367, 672
MaeIII	GTNAC	3 cut(s)	269, 397, 571
MalI	GATC	3 cut(s)	360, 611, 627
MboI	GATC	3 cut(s)	358, 609, 625
MboII	GAAGA	4 cut(s)	60, 328, 599, 881
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	927
MnlI	CCTC	3 cut(s)	172, 537, 775
Mph1103I	ATGCAT	1 cut(s)	937
MroNI	GCCGGC	2 cut(s)	473, 494
MseI	TTAA	2 cut(s)	327, 923
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	3 cut(s)	318, 474, 495
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	71, 292, 479
NaeI	GCCGGC	2 cut(s)	475, 496
NdeII	GATC	3 cut(s)	358, 609, 625
NgoMIV	GCCGGC	2 cut(s)	473, 494
NlaIII	CATG	4 cut(s)	46, 380, 913, 939
NlaIV	GGNNCC	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	269, 571
NsiI	ATGCAT	1 cut(s)	937
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	849
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	2 cut(s)	475, 496
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	3 cut(s)	41, 653, 675
RsaNI	GTAC	3 cut(s)	40, 652, 674
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	2 cut(s)	327, 923
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	358, 609, 625
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	2 cut(s)	202, 430
SfuI	TTCGAA	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	927
SsiI	CCGC	1 cut(s)	907
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	3 cut(s)	71, 356, 728
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	76, 530
TaiI	ACGT	2 cut(s)	370, 675
TaqI	TCGA	2 cut(s)	696, 849
TasI	AATT	1 cut(s)	927
TatI	WGTACW	1 cut(s)	651
Tru1I	TTAA	2 cut(s)	327, 923
Tru9I	TTAA	2 cut(s)	327, 923
TseFI	GTSAC	2 cut(s)	269, 571
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	269, 571
TspDTI	ATGAA	7 cut(s)	248, 600, 785, 843, 876, 926, 930
Van91I	CCANNNNNTGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	927
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	3 cut(s)	71, 356, 728
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.