Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029477.1

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Forward (+)

888 .. 1208

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggggagaaggattatcaaggcaagactagcagcaggccaccagacttatgttctgcaaaggccggcgccagagatcggcctcgacattgagaagctacaaatgctcttctcgtttacgaagcaaggggctcacctcgtcgagggttcgttttcagatttccagagcctcgtcgacgctgtcaagctagttgatgttgtcatatgcaccatgtcggggacacatatccggagtcacaacattatgttgcggctcaagcttgttgaagccattaaagaagctggaaatgttaaggtaataattcaaggtttattttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

106

Amino Acids

11.74

Weight (kDa)

9.58

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	77, 142, 216
AgsI	TTSAA	2 cut(s)	266, 305
AluBI	AGCT	4 cut(s)	97, 187, 259, 281
AluI	AGCT	4 cut(s)	97, 187, 259, 281
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	3 cut(s)	37, 62, 79
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	29, 188
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	2 cut(s)	33, 251
BlsI	GCNGC	2 cut(s)	34, 252
BmiI	GGNNCC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 142, 216
Bse118I	RCCGGY	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	228
BseLI	CCNNNNNNNGG	3 cut(s)	77, 142, 216
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	3 cut(s)	39, 64, 81
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	65, 229
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	3 cut(s)	77, 142, 216
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	39, 64, 81
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	39, 64, 81
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	37, 66
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 103, 256
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	39, 64, 81
Cac8I	GCNNGC	2 cut(s)	37, 66
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	64
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	133
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
FaeI	CATG	1 cut(s)	214
FaiI	YATR	6 cut(s)	51, 203, 205, 212, 225, 245
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	33, 251
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	33, 251
FspBI	CTAG	2 cut(s)	29, 188
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	33, 251
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	39, 64, 81
HapII	CCGG	2 cut(s)	65, 229
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	65, 229
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	117, 175
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	163, 229
Hpy8I	GTNNAC	2 cut(s)	117, 175
Hpy99I	CGWCG	3 cut(s)	143, 176, 179
HpyAV	CCTTC	1 cut(s)	3
HpyCH4V	TGCA	2 cut(s)	58, 207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 103, 256
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	68
KasI	GGCGCC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	21, 56, 78, 84, 176, 242, 267
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	29, 188
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	1 cut(s)	300
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	92, 136, 146, 179
MroI	TCCGGA	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	64
MseI	TTAA	3 cut(s)	273, 291, 319
MspI	CCGG	2 cut(s)	65, 229
MwoI	GCNNNNNNNGC	3 cut(s)	29, 103, 256
NaeI	GCCGGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	68
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	34, 252
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	69
PsyI	GACNNNGTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	273, 291, 319
SatI	GCNGC	2 cut(s)	33, 251
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	7 cut(s)	99, 138, 189, 261, 283, 297, 310
SfoI	GGCGCC	1 cut(s)	69
SgrDI	CGTCGACG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	250
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	29, 188
TaqI	TCGA	3 cut(s)	84, 141, 174
TasI	AATT	1 cut(s)	300
TauI	GCSGC	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	273, 291, 319
Tru9I	TTAA	3 cut(s)	273, 291, 319
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	2 cut(s)	29, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.