Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

24325392 .. 24326674

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAACTACAAAGAGCAAGGTTCTTGTTGTTGGTGGAACTGGTTACATGGGGAGAAGGATTGTCAAGGCAAGACTAGCAGCAGGCCACCAGACTTATGTTCTGCAAAGGCCGGCGCCAGAGATCGGCCTCGACATTGAGAAGCTACAAATGCTCTTCTCGTTTAAGAAGCAAGGGGCTCACCTCGTCGAGGGTTCGTTTTCGGATTTCCAGAGCCTCGTCGACGCTGTCAAGCTAGTTGATGTTGTCATATGCACCATGTCGGGGACACATATCCGGAGTCACAACATTATGTTGCAGCTCAAGCTTGTTGAAGCCATTAAAGAAGCTGGAAATGTTAAGGTAATAATTCAAGAGTTTGTCATGGACGTGGCACGTATAGGAAATGCTCTTGAACCAGGAAGAGTTCCGTTTGATGACAAAATGAAAGTGAGAAAAGCAATAGAAGATGCTAACATCACCTTCACATATGTATGTGGTATTGGCTTCGCGGCTTATCATGCCGGCAACCTCTGCCAAATGGGAACACGTACTGGTTCCTCCAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

183

Amino Acids

19.93

Weight (kDa)

9.43

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 174	6.6e-34	NmrA-like family
Epimerase	PF01370	8 - 115	7.4e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	12 - 159	3.6e-10	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	276
AciI	CCGC	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	3 cut(s)	125, 190, 264
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	314, 353, 395
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	5 cut(s)	145, 235, 301, 307, 329
AluI	AGCT	5 cut(s)	145, 235, 301, 307, 329
Aor13HI	TCCGGA	1 cut(s)	276
AoxI	GGCC	3 cut(s)	85, 110, 127
ApeKI	GCWGC	2 cut(s)	80, 298
AspLEI	GCGC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	173, 451
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	92, 310
BciT130I	CCWGG	1 cut(s)	399
BfaI	CTAG	2 cut(s)	77, 236
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	3 cut(s)	81, 299, 492
BlsI	GCNGC	3 cut(s)	82, 300, 493
Bme1390I	CCNGG	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	117, 538
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	287
BsaAI	YACGTR	2 cut(s)	377, 530
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 190, 264
Bse118I	RCCGGY	2 cut(s)	112, 503
Bse1I	ACTGG	2 cut(s)	46, 538
BseAI	TCCGGA	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	543
BseLI	CCNNNNNNNGG	3 cut(s)	125, 190, 264
BseNI	ACTGG	2 cut(s)	46, 538
BseXI	GCAGC	2 cut(s)	92, 310
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	87, 112, 129
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	113, 277, 504
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	125, 190, 264
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	87, 112, 129
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	3 cut(s)	87, 112, 129
BspEI	TCCGGA	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	117, 538
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	115
BsrFI	RCCGGY	2 cut(s)	112, 503
BsrI	ACTGG	2 cut(s)	46, 538
BssAI	RCCGGY	2 cut(s)	112, 503
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	399
Bst6I	CTCTTC	2 cut(s)	161, 397
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	513
BstBAI	YACGTR	2 cut(s)	377, 530
BstC8I	GCNNGC	3 cut(s)	85, 114, 505
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 151, 304, 500, 513
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	92, 310
BsuRI	GGCC	3 cut(s)	87, 112, 129
BtrI	CACGTC	1 cut(s)	370
Cac8I	GCNNGC	3 cut(s)	85, 114, 505
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	2 cut(s)	112, 503
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	4 cut(s)	49, 259, 364, 500
CviQI	GTAC	1 cut(s)	531
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	161, 397
EarI	CTCTTC	2 cut(s)	161, 397
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	181
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	4 cut(s)	52, 262, 367, 503
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	4 cut(s)	48, 258, 363, 499
FauNDI	CATATG	2 cut(s)	251, 469
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	81, 299, 492
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	81, 299, 492
FspBI	CTAG	2 cut(s)	77, 236
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	3 cut(s)	81, 299, 492
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	87, 112, 129
HapII	CCGG	3 cut(s)	113, 277, 504
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	52, 262, 367, 503
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	3 cut(s)	113, 277, 504
HphI	GGTGA	2 cut(s)	173, 451
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	4 cut(s)	211, 277, 353, 392
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	3 cut(s)	191, 224, 227
HpyAV	CCTTC	2 cut(s)	51, 472
HpyCH4IV	ACGT	3 cut(s)	369, 376, 529
HpyCH4V	TGCA	3 cut(s)	106, 255, 298
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 151, 304, 500, 513
HpySE526I	ACGT	3 cut(s)	369, 376, 529
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	52, 262, 367, 503
HspAI	GCGC	1 cut(s)	116
KasI	GGCGCC	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	276
KroI	GCCGGC	2 cut(s)	112, 503
KroNI	GCCGGC	2 cut(s)	114, 505
Kzo9I	GATC	1 cut(s)	123
LguI	GCTCTTC	1 cut(s)	161
Lsp1109I	GCAGC	2 cut(s)	92, 310
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	77, 236
MaeII	ACGT	3 cut(s)	369, 376, 529
MaeIII	GTNAC	2 cut(s)	44, 281
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	3 cut(s)	148, 414, 458
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	348
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	140, 184, 194, 227, 521, 550
MroI	TCCGGA	1 cut(s)	276
MroNI	GCCGGC	2 cut(s)	112, 503
MseI	TTAA	3 cut(s)	165, 321, 339
MslI	CAYNNNNRTG	2 cut(s)	368, 472
MspI	CCGG	3 cut(s)	113, 277, 504
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	77, 151, 304, 500, 513
NaeI	GCCGGC	2 cut(s)	114, 505
NarI	GGCGCC	1 cut(s)	116
NdeI	CATATG	2 cut(s)	251, 469
NdeII	GATC	1 cut(s)	123
NgoMIV	GCCGGC	2 cut(s)	112, 503
NlaIII	CATG	4 cut(s)	52, 262, 367, 503
NlaIV	GGNNCC	2 cut(s)	117, 538
NmuCI	GTSAC	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	161
PdiI	GCCGGC	2 cut(s)	114, 505
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	82, 300, 493
PleI	GAGTC	1 cut(s)	288
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	288
Ppu21I	YACGTR	2 cut(s)	377, 530
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	117, 538
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	2 cut(s)	368, 472
SalI	GTCGAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	165, 321, 339
SatI	GCNGC	3 cut(s)	81, 299, 492
Sau3AI	GATC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	439
SfoI	GGCGCC	1 cut(s)	117
SgrDI	CGTCGACG	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	368, 472
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	491
SspDI	GGCGCC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	77, 236
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	543
TaiI	ACGT	3 cut(s)	372, 379, 532
TaqI	TCGA	3 cut(s)	132, 189, 222
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	165, 321, 339
Tru9I	TTAA	3 cut(s)	165, 321, 339
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	80, 298
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	77, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.