Rorug07G0138900

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001108
Physical Location & Seq
Reverse (-)
10938831 .. 10943548
4718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0138900.1

Sequence Viewer

Length: 1239 bp
ATGGACCCTGCGTTCGCGGATGAGGGCCACGACGGTGAGACCGTTACTATCGAAGAGTATCTGAAGGATGTTGAGGACCAGGAACTGGAAGCTGATTTGGTTTTGGGGGGCGATGAAGGCAAGGAGTGTACCTATAATAATGGGTACATGAAGAGGCAAGCAATTTTCTCATGCTTGACTTGCACACCAGATGGTAATGCTGGAGTTTGCACAGCTTGCAGCTTGTCTTGTCATGATGGCCATGAGATTGTGGAACTATGGACCAAGAGAAACTTCAGATGTGATTGTGGAAATTCAAAATTTGGTGAGTTCTACTGCAAGATTTTCCCAAGTAAAGATATCGAAAATGTTGAGAACTCCTACAATCATAACTTCAAAGGTTCCTACTGTACCTGTGGCCGCCCCTATCCTGATCCAGACGTGGAAGAACAAGTAGAGATGATACAGTGCTGCTTCTGTGAGGACTGGTTCCATGAGGAACATATTGGTCTTGATTCCTCTGATGAGATTCCAAGAGATGGAGAAGGTGAACCTCTATATGAGGATTTTATATGCGCAGCATGCTCAAAAGTTTGCTCCTTTCTAAGACTATATACTCGAATCATCTTGGAAGCAAGGAGCCAAAACAATTCTTCTGTTAAGACTGGAAAAGATAAAGAAGTTATAGCAGATGAAGTACCTTTAGCTTGTGGATCTGGAAAGCTAGAAAATATTCCTCAGAGTTCTACTACCAACTCTGAATCTGTGTCTGGAGGGGAAGTTTCACTTGGAGAAAATTCTGGGAAGAATATATGTTCAGAGCAATGTGCTACAGATGCTGATACACGTCCTACTTGCGCTATTGGAGTTGATCTGGCAGTTGCTTCCCCTGTTTCAGAGAGTAAGCCAATGTTTCTTTCAAAAAACTGGCGGAATGCTCTTTGCAGGTGTGAAAAGTGCAGTGAATTTTATAAACAGAAGCATATTAGTTTTCTAATTGACAAGGAGGACTCAATCATTGAGTATGAGAAAATGGCAAAGCAGAAGAGAGAAGAAAAGTTGCAGCAACGTGAGGGGGCAGAGTTAAGTATGCTGGATAACCTTGGCCATGTAGAGAAAATTGAGATTCTGAATGGTATTGCAGATATCAAAGATGAGCTTTGTTCTTTCCTGGGATCATTTGATCCATCGAAAGCAATCACATCTGCTGATGTCCACCAGATTTTTGAGAATCTAAAGAAACGCAGGCGTGTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

412

Amino Acids

46.08

Weight (kDa)

4.69

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBR PF02207 43 - 107 1.8e-13 Putative zinc finger in N-recognin (UBR box)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
AarI CACCTGC 1 cut(s) 915
Acc16I TGCGCA 1 cut(s) 556
Acc36I ACCTGC 1 cut(s) 915
AccB7I CCANNNNNTGG 2 cut(s) 85, 518
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 17, 400, 910
AclWI GGATC 4 cut(s) 407, 700, 1157, 1162
AcoI YGGCCR 3 cut(s) 238, 397, 1084
AcsI RAATTY 4 cut(s) 292, 299, 775, 944
AcuI CTGAAG 2 cut(s) 83, 259
AfaI GTAC 4 cut(s) 130, 146, 391, 678
AfiI CCNNNNNNNGG 2 cut(s) 85, 518
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 3 cut(s) 297, 376, 900
AjiI CACGTC 2 cut(s) 421, 827
AjnI CCWGG 2 cut(s) 78, 1149
AjuI GAANNNNNNNTTGG 6 cut(s) 257, 289, 750, 782, 880, 912
AleI CACNNNNGTG 1 cut(s) 33
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 6 cut(s) 92, 215, 222, 686, 703, 1138
AluI AGCT 6 cut(s) 92, 215, 222, 686, 703, 1138
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 4 cut(s) 407, 700, 1157, 1162
AlwNI CAGNNNCTG 2 cut(s) 85, 818
AoxI GGCC 4 cut(s) 25, 238, 397, 1084
ApeKI GCWGC 4 cut(s) 219, 450, 557, 1042
ApoI RAATTY 4 cut(s) 292, 299, 775, 944
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 2 cut(s) 557, 839
AspS9I GGNCC 4 cut(s) 4, 25, 76, 261
AsuHPI GGTGA 3 cut(s) 47, 317, 539
AvaII GGWCC 3 cut(s) 4, 76, 261
BalI TGGCCA 2 cut(s) 240, 1086
BbvI GCAGC 4 cut(s) 231, 437, 569, 1054
BccI CCATC 4 cut(s) 185, 230, 512, 1174
BciT130I CCWGG 2 cut(s) 80, 1151
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 704
BfmI CTRYAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 915
BisI GCNGC 5 cut(s) 220, 400, 451, 558, 1043
BlsI GCNGC 5 cut(s) 221, 401, 452, 559, 1044
Bme1390I CCNGG 2 cut(s) 80, 1151
Bme18I GGWCC 3 cut(s) 4, 76, 261
BmgBI CACGTC 2 cut(s) 421, 827
BmgT120I GGNCC 4 cut(s) 4, 25, 76, 261
BmiI GGNNCC 4 cut(s) 6, 382, 470, 620
BmrFI CCNGG 2 cut(s) 80, 1151
BmsI GCATC 1 cut(s) 805
BpmI CTGGAG 2 cut(s) 222, 771
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 1081, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 518
Bse1I ACTGG 4 cut(s) 90, 470, 649, 911
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 2 cut(s) 80, 1151
BseDI CCNNGG 2 cut(s) 1081, 1150
BseGI GGATG 2 cut(s) 25, 73
BseLI CCNNNNNNNGG 2 cut(s) 85, 518
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 4 cut(s) 90, 470, 649, 911
BseXI GCAGC 4 cut(s) 231, 437, 569, 1054
BsgI GTGCAG 1 cut(s) 958
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 4 cut(s) 27, 240, 399, 1086
BslI CCNNNNNNNGG 2 cut(s) 85, 518
BsmAI GTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 4 cut(s) 27, 240, 399, 1086
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 5 cut(s) 412, 692, 850, 1154, 1162
BspACI CCGC 3 cut(s) 17, 400, 910
BspANI GGCC 4 cut(s) 27, 240, 399, 1086
BspCNI CTCAG 1 cut(s) 730
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 4 cut(s) 6, 382, 470, 620
BspMI ACCTGC 1 cut(s) 915
BspPI GGATC 4 cut(s) 407, 700, 1157, 1162
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 809
BsrI ACTGG 4 cut(s) 90, 470, 649, 911
BssECI CCNNGG 2 cut(s) 1081, 1150
BssMI GATC 5 cut(s) 412, 692, 850, 1154, 1162
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 2 cut(s) 80, 1151
Bst4CI ACNGT 4 cut(s) 35, 43, 389, 447
Bst6I CTCTTC 3 cut(s) 48, 146, 1019
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 159, 217, 562, 1226
BstDEI CTNAG 2 cut(s) 584, 717
BstF5I GGATG 2 cut(s) 25, 73
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 2 cut(s) 557, 839
BstKTI GATC 5 cut(s) 415, 695, 853, 1157, 1165
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 5 cut(s) 412, 692, 850, 1154, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 117, 180, 216, 561, 815
BstNI CCWGG 2 cut(s) 80, 1151
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 78, 1149
BstSFI CTRYAG 1 cut(s) 810
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 4 cut(s) 231, 437, 569, 1054
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BsuRI GGCC 4 cut(s) 27, 240, 399, 1086
BtgZI GCGATG 1 cut(s) 126
BtrI CACGTC 2 cut(s) 421, 827
BtsCI GGATG 2 cut(s) 25, 73
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 452, 946
BveI ACCTGC 1 cut(s) 915
Cac8I GCNNGC 4 cut(s) 159, 217, 562, 1226
CaiI CAGNNNCTG 2 cut(s) 85, 818
CciI TCATGA 1 cut(s) 232
CfoI GCGC 2 cut(s) 557, 839
Cfr13I GGNCC 4 cut(s) 4, 25, 76, 261
Csp6I GTAC 4 cut(s) 129, 145, 390, 677
CviAII CATG 7 cut(s) 148, 171, 233, 242, 473, 561, 1088
CviQI GTAC 4 cut(s) 129, 145, 390, 677
DdeI CTNAG 2 cut(s) 584, 717
DpnI GATC 5 cut(s) 414, 694, 852, 1156, 1164
DpnII GATC 5 cut(s) 412, 692, 850, 1154, 1162
EaeI YGGCCR 3 cut(s) 238, 397, 1084
Eam1104I CTCTTC 3 cut(s) 48, 146, 1019
EarI CTCTTC 3 cut(s) 48, 146, 1019
EciI GGCGGA 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 1081
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 2 cut(s) 340, 1126
Eco47I GGWCC 3 cut(s) 4, 76, 261
Eco57I CTGAAG 2 cut(s) 83, 259
EcoRII CCWGG 2 cut(s) 78, 1149
EcoRV GATATC 2 cut(s) 340, 1126
EcoT14I CCWWGG 1 cut(s) 1081
ErhI CCWWGG 1 cut(s) 1081
FaeI CATG 7 cut(s) 151, 174, 236, 245, 476, 564, 1091
FalI AAGNNNNNCTT 6 cut(s) 257, 289, 750, 782, 1122, 1154
FatI CATG 7 cut(s) 147, 170, 232, 241, 472, 560, 1087
Fnu4HI GCNGC 5 cut(s) 220, 400, 451, 558, 1043
FokI GGATG 2 cut(s) 32, 80
Fsp4HI GCNGC 5 cut(s) 220, 400, 451, 558, 1043
FspBI CTAG 1 cut(s) 704
FspI TGCGCA 1 cut(s) 556
GlaI GCGC 2 cut(s) 556, 838
GluI GCNGC 5 cut(s) 220, 400, 451, 558, 1043
GsuI CTGGAG 2 cut(s) 222, 771
HaeIII GGCC 4 cut(s) 27, 240, 399, 1086
HhaI GCGC 2 cut(s) 557, 839
Hin1II CATG 7 cut(s) 151, 174, 236, 245, 476, 564, 1091
Hin6I GCGC 2 cut(s) 555, 837
HinP1I GCGC 2 cut(s) 555, 837
HinfI GANTC 7 cut(s) 494, 508, 600, 740, 989, 1105, 1210
HphI GGTGA 3 cut(s) 47, 317, 539
Hpy166II GTNNAC 3 cut(s) 129, 530, 1195
Hpy188I TCNGA 8 cut(s) 63, 278, 502, 720, 739, 799, 877, 1110
Hpy188III TCNNGA 6 cut(s) 233, 410, 416, 491, 696, 750
Hpy8I GTNNAC 3 cut(s) 129, 530, 1195
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 58, 110, 518
HpyCH4III ACNGT 4 cut(s) 35, 43, 389, 447
HpyCH4IV ACGT 3 cut(s) 420, 826, 1048
HpyCH4V TGCA 8 cut(s) 183, 210, 219, 318, 924, 939, 1042, 1121
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 180, 216, 561, 815
HpyF3I CTNAG 2 cut(s) 584, 717
HpySE526I ACGT 3 cut(s) 420, 826, 1048
Hsp92II CATG 7 cut(s) 151, 174, 236, 245, 476, 564, 1091
HspAI GCGC 2 cut(s) 555, 837
Kzo9I GATC 5 cut(s) 412, 692, 850, 1154, 1162
LmnI GCTCC 2 cut(s) 581, 618
Lsp1109I GCAGC 4 cut(s) 231, 437, 569, 1054
LweI GCATC 1 cut(s) 805
MaeI CTAG 1 cut(s) 704
MaeII ACGT 3 cut(s) 420, 826, 1048
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 414, 694, 852, 1156, 1164
MboI GATC 5 cut(s) 412, 692, 850, 1154, 1162
MboII GAAGA 7 cut(s) 65, 163, 437, 624, 796, 1036, 1043
MflI RGATCY 1 cut(s) 692
MlsI TGGCCA 2 cut(s) 240, 1086
MluCI AATT 8 cut(s) 162, 292, 299, 628, 775, 944, 975, 1098
MluNI TGGCCA 2 cut(s) 240, 1086
MlyI GAGTC 1 cut(s) 983
Mox20I TGGCCA 2 cut(s) 240, 1086
MroXI GAANNNNTTC 1 cut(s) 711
MscI TGGCCA 2 cut(s) 240, 1086
MseI TTAA 2 cut(s) 639, 1064
MslI CAYNNNNRTG 1 cut(s) 33
Msp20I TGGCCA 2 cut(s) 240, 1086
MspR9I CCNGG 2 cut(s) 80, 1151
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 80, 1151
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 5 cut(s) 117, 180, 216, 561, 815
NdeII GATC 5 cut(s) 412, 692, 850, 1154, 1162
NlaIII CATG 7 cut(s) 151, 174, 236, 245, 476, 564, 1091
NlaIV GGNNCC 4 cut(s) 6, 382, 470, 620
NsbI TGCGCA 1 cut(s) 556
NspI RCATGY 1 cut(s) 564
OliI CACNNNNGTG 1 cut(s) 33
PaeI GCATGC 1 cut(s) 564
PagI TCATGA 1 cut(s) 232
PaqCI CACCTGC 1 cut(s) 915
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 6 cut(s) 494, 508, 600, 740, 1105, 1210
PflMI CCANNNNNTGG 2 cut(s) 85, 518
PkrI GCNGC 5 cut(s) 221, 401, 452, 559, 1044
PleI GAGTC 1 cut(s) 983
PpsI GAGTC 1 cut(s) 983
PsiI TTATAA 1 cut(s) 951
Psp6I CCWGG 2 cut(s) 78, 1149
PspGI CCWGG 2 cut(s) 78, 1149
PspN4I GGNNCC 4 cut(s) 6, 382, 470, 620
PspPI GGNCC 4 cut(s) 4, 25, 76, 261
PstNI CAGNNNCTG 2 cut(s) 85, 818
PsuI RGATCY 1 cut(s) 692
RsaI GTAC 4 cut(s) 130, 146, 391, 678
RsaNI GTAC 4 cut(s) 129, 145, 390, 677
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 639, 1064
SatI GCNGC 5 cut(s) 220, 400, 451, 558, 1043
Sau3AI GATC 5 cut(s) 412, 692, 850, 1154, 1162
Sau96I GGNCC 4 cut(s) 4, 25, 76, 261
SchI GAGTC 1 cut(s) 983
ScrFI CCNGG 2 cut(s) 80, 1151
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 3 cut(s) 4, 76, 261
SmiMI CAYNNNNRTG 1 cut(s) 33
SphI GCATGC 1 cut(s) 564
Sse9I AATT 8 cut(s) 162, 292, 299, 628, 775, 944, 975, 1098
SsiI CCGC 3 cut(s) 17, 400, 910
SspI AATATT 1 cut(s) 712
SspMI CTAG 1 cut(s) 704
StyD4I CCNGG 2 cut(s) 78, 1149
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 4 cut(s) 35, 43, 389, 447
TaiI ACGT 3 cut(s) 423, 829, 1051
TaqI TCGA 4 cut(s) 51, 342, 598, 1169
TasI AATT 8 cut(s) 162, 292, 299, 628, 775, 944, 975, 1098
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 6 cut(s) 494, 508, 600, 740, 1105, 1210
Tru1I TTAA 2 cut(s) 639, 1064
Tru9I TTAA 2 cut(s) 639, 1064
TscAI CASTG 2 cut(s) 452, 946
TseI GCWGC 4 cut(s) 219, 450, 557, 1042
TspDTI ATGAA 3 cut(s) 129, 164, 687
TspRI CASTG 2 cut(s) 452, 946
Van91I CCANNNNNTGG 2 cut(s) 85, 518
VpaK11BI GGWCC 3 cut(s) 4, 76, 261
XapI RAATTY 4 cut(s) 292, 299, 775, 944
XceI RCATGY 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.